KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:00:08 2014 Check: 00 .. Name: ENSTTRP00000006635/1-1070 Len: 1117 Check: 4380 Weight: 1.00 Name: ENSP00000418754/1-1078 Len: 1117 Check: 7682 Weight: 1.00 Name: ENSBTAP00000016963/1-1070 Len: 1117 Check: 6817 Weight: 1.00 Name: bmy_00060T0/1-1090 Len: 1117 Check: 6909 Weight: 1.00 Name: BACU017971/1-1065 Len: 1117 Check: 4127 Weight: 1.00 // 1 50 ENSTTRP00000006635/1-1070 -MGAARGT-- PSSPRRLPLL SVLLLP---- -LLGGAQATI VFIKEPSSQD ENSP00000418754/1-1078 MGSFLSGEKR PSAPTVGSAM EKKEFPTPPG RVGPGTQTAI VFIKQPSSQD ENSBTAP00000016963/1-1070 -MGTARGA-- PSSPCRLPLL SVLLLP---- -LLGGAQAAL VFIKEPSSQD bmy_00060T0/1-1090 MARLLRAA-- FICTC----- -VRHRC---- -VSSGAQATI VFIKEPSSQD BACU017971/1-1065 MARLPRAA-- FICTC----- -VRHRC---- -VSSGAQATI VFIKEPSSQD 51 100 ENSTTRP00000006635/1-1070 ALQGRRALLR CEVEAPGPVH VYWLLDGAPV QDTERRFAQG SSLSFAAVDR ENSP00000418754/1-1078 ALQGRRALLR CEVEAPGPVH VYWLLDGAPV QDTERRFAQG SSLSFAAVDR ENSBTAP00000016963/1-1070 ALQGRRALLR CEVEAPGPVH VFWLLDGAPI QDTERRFTQG SSLSFTAVDR bmy_00060T0/1-1090 ALQGRRALLR CEVEAPGPVH VYWLLDGAPV QDTERRFAQG SSLSFAAVDR BACU017971/1-1065 ALQGRRALLR CEVEAPGPVH VYWLLDGAPV QDTERRFAQG SSLSFAAVDR 101 150 ENSTTRP00000006635/1-1070 LQDSGAFQCV ARDDATGEEA RSANASFNIK WIESGPVVLK HPASEAEIQP ENSP00000418754/1-1078 LQDSGTFQCV ARDDVTGEEA RSANASFNIK WIEAGPVVLK HPASEAEIQP ENSBTAP00000016963/1-1070 LQDSGAFQCV ARDEVTGEEA RSANASFNIK WLETGPVVLK HPASEAAIQP bmy_00060T0/1-1090 LQDSGAFQCV ARDDATGEEA RSANASFNIK WIESGPVVLK HPASEAEIQP BACU017971/1-1065 LQDSGAFQCV ARDDATGEEA RSANASFNIK WIESGPVVLK HPASEAEIQP 151 200 ENSTTRP00000006635/1-1070 QTQVMLRCHI DGHPRPTYQW FQDGSALSDG QSNHTVSSKE KNLTLRPAGP ENSP00000418754/1-1078 QTQVTLRCHI DGHPRPTYQW FRDGTPLSDG QSNHTVSSKE RNLTLRPAGP ENSBTAP00000016963/1-1070 LTQVTLRCHI DGHPRPTYQW FRDGSALSDG QSNHTVSSKE RNLTLRPAGP bmy_00060T0/1-1090 QTQVMLRCHI DGHPRPTYQW FQDGSALSDG QSNHTVSSKE KNLTLRPAGP BACU017971/1-1065 QTQVMLRCHI DGHPRPTYQW FQDGSALSDG QSNHTVSSKE KNLTLRPAGP 201 250 ENSTTRP00000006635/1-1070 EHSGIYSCCA HNAFGQACSS QNFTLSIADE SFARVVLAPQ DVVVARNEEA ENSP00000418754/1-1078 EHSGLYSCCA HSAFGQACSS QNFTLSIADE SFARVVLAPQ DVVVARYEEA ENSBTAP00000016963/1-1070 EHSGVYSCCA HNAFGQACSS QNFTLSIADE SFARVVLAPQ DVVVARNEEA bmy_00060T0/1-1090 EHSGIYSCCA HNAFGQACSS QNFTLSIADE SFARVVLAPQ DVVVARNEEA BACU017971/1-1065 EHSGIYSCCA HNAFGQACSS QNFTLSIADE SFARVVLAPQ DVVVARNEEA 251 300 ENSTTRP00000006635/1-1070 MFHCQFSAHP PPSLQWVFED ETPITNRSRP PHVRRATVFA NGSLLLTQVR ENSP00000418754/1-1078 MFHCQFSAQP PPSLQWLFED ETPITNRSRP PHLRRATVFA NGSLLLTQVR ENSBTAP00000016963/1-1070 MFHCQFSAQP PPSLQWVFED ETAITNRSRP PHLRRATVFA NGSLQLTQVR bmy_00060T0/1-1090 MFHCQFSAHP PPSLQ----- ---------P PHVRRATVFA NGSLLLTQVR BACU017971/1-1065 MFHCQFSAHP PPSLQWVFED DTPITNRSRP PHVRRATVFA NGSLLLTQVR 301 350 ENSTTRP00000006635/1-1070 PRNAGVYRCV GQGQRGPPVI LEATLHLAEI EDMPPFEPRV FTAGSEERVA ENSP00000418754/1-1078 PRNAGIYRCI GQGQRGPPII LEATLHLAEI EDMPLFEPRV FTAGSEERVT ENSBTAP00000016963/1-1070 PRNAGVYRCI GQGQRGPPVV LEATLHLAEI EDMPPFEPRV FTAGSEERVA bmy_00060T0/1-1090 PRNAGVYRCV GQGQRGPPVI LEATLHLAEI EDMPPFEPRV FTAGSEERVA BACU017971/1-1065 PRNAGVYRCV GQGQRGPPVI LEATLHLAEI EDMPPFEPRV FTAGSEERVA 351 400 ENSTTRP00000006635/1-1070 CPPPQGLPEP SVWWEHAGAR LPAHGRVYQQ GHELVFASTA KSDAGVYTCH ENSP00000418754/1-1078 CLPPKGLPEP SVWWEHAGVR LPTHGRVYQK GHELVLANIA ESDAGVYTCH ENSBTAP00000016963/1-1070 CPPPQGLPEP SVWWEHAGAR LPAHGRVYQQ GHELVFASTA ESDAGVYTCH bmy_00060T0/1-1090 CPPPQGLPEP SVWWEHAGAR LPAHGRVYQQ GHELVFASTA ESDAGVYTCH BACU017971/1-1065 CPPPQGLPEP SVWWEHAGAR LPAHGRVYQQ GHELVFASTA ESDAGVYTCH 401 450 ENSTTRP00000006635/1-1070 AANLAGWRRQ DVNITVATVP TWLEKPQDSQ LEEGKPGYLH CLTQATPKPT ENSP00000418754/1-1078 AANLAGQRRQ DVNITVATVP SWLKKPQDSQ LEEGKPGYLD CLTQATPKPT ENSBTAP00000016963/1-1070 AANLAGQRRQ DVNITVATVP TWLEKPQDSQ LEEGKPGYLH CLTQATPKPT bmy_00060T0/1-1090 AANLAGWRRQ DVNITVATVP TWLEKPQDSQ LEEGKPGYLH CLTQATPKPT BACU017971/1-1065 AANLAGGRRQ DVNVTVATVP TWLEKPQDSQ LEEGKPGYLH CLTQATPKPT 451 500 ENSTTRP00000006635/1-1070 VSWYRNQMLI SEDSRFEVFK NGTLRINSVE VYDGTWYRCV SSTPAGSIEA ENSP00000418754/1-1078 VVWYRNQMLI SEDSRFEVFK NGTLRINSVE VYDGTWYRCM SSTPAGSIEA ENSBTAP00000016963/1-1070 VVWYRNQMLI SEDSRFEVFK NGTLRINSVE VYDGTWYRCV SSTPAGTIEA bmy_00060T0/1-1090 VSWYRNQMLI SEDSRFEVFK NGTLRINSVE VYDGTWYRCV SSTPAGSIEA BACU017971/1-1065 VSWYRNQMLI SEDSRFEVFK NGTLRINSVE VYDGTWYRCM SSTPAGSIEA 501 550 ENSTTRP00000006635/1-1070 QARVQVLEKL KFTPPPRPQQ CMEFDKEATV PCSATGREKP TIKWVRADGS ENSP00000418754/1-1078 QARVQVLEKL KFTPPPQPQQ CMEFDKEATV PCSATGREKP TIKWERADGS ENSBTAP00000016963/1-1070 QARVQVLEKL KFTPPPRPQQ CMEFDKEATV PCSATGREKP TIKWVRADGS bmy_00060T0/1-1090 QARVQVLEKL KFTPPPRPQQ CMEFDKEATV PCSATGREKP TIKWVRADGS BACU017971/1-1065 QARVQVLEKL KFTPPPRPQQ CMEFDKEATV PCSATGREKP TIKWVRADGS 551 600 ENSTTRP00000006635/1-1070 SLPEWVTDNA GTLHFARVTR NDAGNYTCIA SNGLQGQIRA HVQLTVA--- ENSP00000418754/1-1078 SLPEWVTDNA GTLHFARVTR DDAGNYTCIA SNGPQGQIRA HVQLTVA--- ENSBTAP00000016963/1-1070 SLPEWVTDNA GTLHFSRVTR DDAGNYTCIA SNGLQGQIRA HVQLTVA--- bmy_00060T0/1-1090 SLPEWVTDNA GTLHFSRVTR NDAGNYTCIA SNGLQGQIRA HVQLTVAGAT BACU017971/1-1065 SLPEWVTDNA GTLHFSRVTR DDAGNYTCIA SNGLQGQIRA HVQLTVA--- 601 650 ENSTTRP00000006635/1-1070 ---------- ---------- ---------- ------XXXX XXXXXXXXXX ENSP00000418754/1-1078 ---------- ---------- ---------- ------VFIT FKVEPERTTV ENSBTAP00000016963/1-1070 ---------- ---------- ---------- ------VFIT FKVEPERTTV bmy_00060T0/1-1090 VQGAGAGAGG PCGAAACTPP APLLSAPCPL PGSSHPVFIT FKVEPERTTV BACU017971/1-1065 ---------- ---------- ---------- ------VFIT FKVEPERTTV 651 700 ENSTTRP00000006635/1-1070 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XKNGSLVIHD ENSP00000418754/1-1078 YQGHTALLQC EAQGDPKPLI QWKGKDRILD PTKLGPRMHI FQNGSLVIHD ENSBTAP00000016963/1-1070 YQGHTALLRC EAQGDPKPLI QWKGKDRILD PTKLGPRMHI FQNGSLVIHD bmy_00060T0/1-1090 YQGHTALLRC EAQGDPKPLI QWKGKDRILD PTKLGPRMHI FQNGSLVIHD BACU017971/1-1065 YQGHTALLRC EAQGDPKPLI QWKGKDRILD PTKLGPRMHI FQNGSLVIHD 701 750 ENSTTRP00000006635/1-1070 VAPEDSGRYT CIAGNSCNIK HTEAPLYVVD KPVLEESEGL GSPPPYKMIQ ENSP00000418754/1-1078 VAPEDSGRYT CIAGNSCNIK HTEAPLYVVD KPVPEESEGP GSPPPYKMIQ ENSBTAP00000016963/1-1070 VAPEDSGRYT CIAGNSCNIK HTEAPLYVVD KPVLEESEGP GSPPPYKMIQ bmy_00060T0/1-1090 VAPEDSGRYT CIAGNSCNIK HTEAPLYVVD KPVLEDSEGL GSPPPYKMIQ BACU017971/1-1065 VAPEDSGRYT CIAGNSCNIK HTEAPLYVVD KPVLEESEGL GSPPPYKMIQ 751 800 ENSTTRP00000006635/1-1070 TIGLSVGAAV AYIIAVLGLM FYCKKRCKAK RLQKQPEGEE PEMECLNGGP ENSP00000418754/1-1078 TIGLSVGAAV AYIIAVLGLM FYCKKRCKAK RLQKQPEGEE PEMECLNGGP ENSBTAP00000016963/1-1070 TIGLSVGAAV AYIIAVLGLM FYCKKRCKAK RLQKQPEGEE PEMECLNGGP bmy_00060T0/1-1090 TIGLSVGAAV AYIIAVLGLM FYCKKRCKAK RLQKQPEGEE PEMECLNGGP BACU017971/1-1065 TIGLSVGAAV AYIIAVLGLM FYCKKRCKAK RLQKQPEGEE PEMECLNGGP 801 850 ENSTTRP00000006635/1-1070 LQNGQPSAEI QEEVALTSLG SSSAATNKRH STSDKMHFPR ASLQPITTLG ENSP00000418754/1-1078 LQNGQPSAEI QEEVALTSLG SGPAATNKRH STSDKMHFPR SSLQPITTLG ENSBTAP00000016963/1-1070 LQNGQPSAEI QEEVALTSLG SGSAATSKRH STSDKMHFPR ASLQPITTLG bmy_00060T0/1-1090 LQNGQPSAEI QEEVALTSLG SGSAATNKRH STSDKMHFPR ASLQPITTLG BACU017971/1-1065 LQNGQPSAEI QEEVALTSLG SGSAATNKRH STSDKMHFPR ASLQPITTLG 851 900 ENSTTRP00000006635/1-1070 KSEFGEVFLA KAQGLEEGVP ETLVLVKSLQ SRDEQQQLDF RREFEMFGKL ENSP00000418754/1-1078 KSEFGEVFLA KAQGLEEGVA ETLVLVKSLQ SKDEQQQLDF RRELEMFGKL ENSBTAP00000016963/1-1070 KSEFGEVFLA KAQGLEEGSP ETLVLVKSLQ SRDEQQQLDF RREFEMFGKL bmy_00060T0/1-1090 KSEFGEVFLA KAQGLEEGVP ETLVLVKSLQ SRDEQQQLDF RREFEMFGKL BACU017971/1-1065 KSEFGEVFLA KAQGLEEGVP ETLVLVKSLQ SRDEQQQLDF RREFEMFGKL 901 950 ENSTTRP00000006635/1-1070 NHANVVRLLG LCREAEPHYM VLEYVDLGDL KQFLRISKSK DEKLKSQPLS ENSP00000418754/1-1078 NHANVVRLLG LCREAEPHYM VLEYVDLGDL KQFLRISKSK DEKLKSQPLS ENSBTAP00000016963/1-1070 NHANVVRLLG LCREAEPHYM VLEYVDLGDL KQFLRISKSK DEKLKSQPLS bmy_00060T0/1-1090 NHANVVRLLG LCREAEPHYM VLEYVDLGDL KQFLRISKSK DEKLKSQPLS BACU017971/1-1065 NHANVVRLLG LCREAEPHYM VLEYVDLGDL KQFLRISKSK DEKLKSQPLS 951 1000 ENSTTRP00000006635/1-1070 TKQKVALCTQ VALGMEHLSN NRFVHKDLAA RNCLVSAQRQ VKVSALGLSK ENSP00000418754/1-1078 TKQKVALCTQ VALGMEHLSN NRFVHKDLAA RNCLVSAQRQ VKVSALGLSK ENSBTAP00000016963/1-1070 TKQKVGLCTQ VALGMEHLSN NRFVHKDLAA RNCLVSAQRQ VKVSALGLSK bmy_00060T0/1-1090 TKQKVALCTQ VALGMEHLSN NRFVHKDLAA RNCLVSAQRQ VKVSALGLSK BACU017971/1-1065 TKQKVALCTQ VALGMEHLSN NRFVHKDLAA RNCLVSAQRQ VKVSALGLSK 1001 1050 ENSTTRP00000006635/1-1070 DVYNSEYYHF RQAWVPLRWM SPEAILEGDF STKSDVWAFG VLMWEVFTHG ENSP00000418754/1-1078 DVYNSEYYHF RQAWVPLRWM SPEAILEGDF STKSDVWAFG VLMWEVFTHG ENSBTAP00000016963/1-1070 DVYNSEYYHF RQAWVPLRWM PPEAILEGDF STKSDVWAFG VLMWEVFTHG bmy_00060T0/1-1090 DVYNSEYYHF RQAWVPLRWM SPEAILEGDF STKSDVWAFG VLMWEVFTHG BACU017971/1-1065 DVYNSEYYHF RQAWVPLRWM SPEAILEGDF STKSDVWAFG VLMWEVFTHG 1051 1100 ENSTTRP00000006635/1-1070 EMPHGGQADD EVLADLQAGK ARLPQPEGCP SKLYRLMQRC WALSPKDRPS ENSP00000418754/1-1078 EMPHGGQADD EVLADLQAGK ARLPQPEGCP SKLYRLMQRC WALSPKDRPS ENSBTAP00000016963/1-1070 EMPHGGQADD EVLADLQAGK ARLPQPEGCP SKLYRLMQRC WALSPKDRPS bmy_00060T0/1-1090 EMPHGGQADD EVLADLQAGK ARLPQPEGCP SKLYRLMQRC WALSPKDRPS BACU017971/1-1065 EMPHGGQADD EVLADLQAGK ARLPQPEGCP SKLYRLMQRC WALSPKDRPS 1101 1150 ENSTTRP00000006635/1-1070 FSEIANTLGD NPADNKP ENSP00000418754/1-1078 FSEIASALGD STVDSKP ENSBTAP00000016963/1-1070 FSEIANALGD SPADSKP bmy_00060T0/1-1090 FSEIANTLGD SPADNKP BACU017971/1-1065 FSEIANTLGD SPADNKP