KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:00:05 2014 Check: 00 .. Name: ENSP00000373404/1-305 Len: 314 Check: 9307 Weight: 1.00 Name: ENSBTAP00000016951/1-306 Len: 314 Check: 1785 Weight: 1.00 Name: ENSTTRP00000006629/1-246 Len: 314 Check: 1683 Weight: 1.00 Name: bmy_00063T0/1-314 Len: 314 Check: 155 Weight: 1.00 Name: BACU019256/1-258 Len: 314 Check: 4680 Weight: 1.00 // 1 50 ENSP00000373404/1-305 MALCALTRAL RSLNLAPPTV AAPAPSLFPA AQMMNNGLLQ QPSALMLLPC ENSBTAP00000016951/1-306 MALRVVTRAL GSLSLTPRIA AVPGPSLLPA AQVTNNVLLQ LPSASMLLPS ENSTTRP00000006629/1-246 MALRALTRAL GSLSLTPRIA AVPSPSLLLA TQVTNNVLLP LPSPSMLLPC bmy_00063T0/1-314 MALRALTRAL GSLSLTPRIA AVPGPSLLLA AQVTNNVLLP LPSPSMLLPC BACU019256/1-258 MALRALTRAL GSVSLTPRIA AVPGPSLLLA AQVTNNVLLP LPSPSMLLPC 51 100 ENSP00000373404/1-305 RPVLTSVALN ANFVSWKSRT KYTITPVKMR KSGGRDHTGR IRVHGIGGGH ENSBTAP00000016951/1-306 RPLLTSVALS AKFVSWKSRT KYTTMPVKMR KSGGRNHTGR IQVHGIGGGH ENSTTRP00000006629/1-246 RPVLTSVALS AKFVSWKSRT KYTVMPVKMR KSGGRNHTGR IQVHGIGGGH bmy_00063T0/1-314 RPVLTSVALS AKFVSWKSRT KYTVMPVKMR KSGGRNHTGR IQVHGIGGGH BACU019256/1-258 RPVLTSVALS AKFVSWKSRT KYTVMPVKMR KSGGRNHTGR IQVHGIGGGH 101 150 ENSP00000373404/1-305 KQRYRMIDFL RFRPEET-KS GPFEEKVIQV RYDPCR---- ----SADIAL ENSBTAP00000016951/1-306 KQRYRMIDFL RFRPEQESKP GPFEEKVIVV RYDPCR---- ----SADIAL ENSTTRP00000006629/1-246 KQRYRMIDFL RFRLQQT--- ---EEKVITF RYDPCR---- ----SSDIAL bmy_00063T0/1-314 KQRYRMIDFL RFRPEQESKP GPFEEKVITV RYDPCRQVWD VRWWSADIAL BACU019256/1-258 KQRYRMIDFL RFRPEQESKP GPFEEKVITV RYDPCRQVWD VR--SADIAL 151 200 ENSP00000373404/1-305 VAGGSRKRWI IATENMQAGD TILNSNHIGR MAVAAREGDA HPLGALPVGT ENSBTAP00000016951/1-306 VAGGNRKRWI IATENMKAGD TILNSDHIGR MAVAAREGDA HPLGALPVGT ENSTTRP00000006629/1-246 VAGGNRKRWI IATENMQAGD TILNSDHIGR MAVAAREGDA HPLGALPVGT bmy_00063T0/1-314 VAGGNRKRWI IATENMQAGD TILNSDHIGR MAVAAREGDA HPLGALPVGT BACU019256/1-258 VAGGNRKRWI IATENMQAGD TILNSDHIGR MAVAAREGDA HPLGALPVGT 201 250 ENSP00000373404/1-305 LINNVESEPG RGAQYIRAAG TCGVLLRKVN GTAIIQLPSK RQMQVLETCV ENSBTAP00000016951/1-306 LINNVESEPG RGAQYIRAAG TCGVLLRKVN GTAIIQLPSK RQMQVLETCT ENSTTRP00000006629/1-246 LINNVESEPG RGAQYIRAAG TCGVLLRKVN GTAIIQLPSK RQMQVLETCI bmy_00063T0/1-314 LINNVESEPG RGAQYIRAAG TCGVLLRKVN GTAIIQLPSK RQMQVLETCI BACU019256/1-258 LINNVESEPG RGAQYIRAAG TCGVLLRKVN GTAIIQLPSK RQMQVLETCI 251 300 ENSP00000373404/1-305 ATVGRVSNVD HNKRVIGKAG RNRWLGKRPN SGRWHRKGGW AGRKIRPLPP ENSBTAP00000016951/1-306 ATVGRVSNVD HNKRVIGKAG RNRWLGKRPN SGRWHRKGGW AGRKIRPLPP ENSTTRP00000006629/1-246 ATVGRVSNVD ---------- ---------- ---------- ---------- bmy_00063T0/1-314 ATVGRVSNVD HNKRVIGKAG RNRWLGKRPN SGRWHRKGGW AGRKIRPLPP BACU019256/1-258 ATVGRVSNVD ---------- ---------- ---------- ---------- 301 350 ENSP00000373404/1-305 MKSYVKLPSA SAQS ENSBTAP00000016951/1-306 MKSYVKLPSA AAQN ENSTTRP00000006629/1-246 ---------- ---- bmy_00063T0/1-314 MKSYVKLPSA AAQS BACU019256/1-258 ---------- ----