KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 17:00:05 2014  Check: 00 ..

 Name: ENSBTAP00000016947/1-185  Len:    185  Check:  1481  Weight:  1.00
 Name: ENSP00000264031/1-184     Len:    185  Check:  913  Weight:  1.00
 Name: ENSTTRP00000002765/1-172  Len:    185  Check:  4233  Weight:  1.00
 Name: bmy_03259T0/1-121         Len:    185  Check:  7874  Weight:  1.00
 Name: BACU017328/1-185          Len:    185  Check:  1038  Weight:  1.00

//


                          1                                                   50
ENSBTAP00000016947/1-185  MASPWPVWTL SWILILLAVL VPGAAADFNI SSLSGLLSPV MTESLLVALP 
ENSP00000264031/1-184     MAPLLPIRTL PLILILLALL SPGAA-DFNI SSLSGLLSPA LTESLLVALP 
ENSTTRP00000002765/1-172  MASPLPVRTL SLILILLAVL APRAA-DFNI SSLSGLLSPA LTESLLVALP 
bmy_03259T0/1-121         ---------- ---------- ------DFNI SSLSGLLSPA LTESLLVALP 
BACU017328/1-185          MASPLPVRTL SLILILLAVL APGAAADFNI SSLSGLLSPA LTESLLVALP 


                          51                                                 100
ENSBTAP00000016947/1-185  PCHLTGGNAT LTVRRANDSK VVRSSFVVPP CRGRRELVSV VDSGSGFTVT 
ENSP00000264031/1-184     PCHLTGGNAT LMVRRANDSK VVTSSFVVPP CRGRRELVSV VDSGAGFTVT 
ENSTTRP00000002765/1-172  PCHLTGGNAT LMVRRANDSK VVKSSFVMPP CRGRRELVSV VDSGSGFTVT 
bmy_03259T0/1-121         PCHLTGGNAT LMVRRANDSK VVKSSFVVPP CRGRRELVSV VDSGSGFTVT 
BACU017328/1-185          PCHLTGGNAT LIVRRANDSK VVKSSFVVPP CRGRRELVSV VDSGSGFTVT 


                          101                                                150
ENSBTAP00000016947/1-185  RLSAYQVTNL APGTKYYISY LVTKGASTES SREIPMSTFP RRKAESIGLA 
ENSP00000264031/1-184     RLSAYQVTNL VPGTKFYISY LVKKGTATES SREIPMSTLP RRNMESIGLG 
ENSTTRP00000002765/1-172  RLSAYQMTNL VPGTKYYISY LVTKGASTES SREVPMSTLP RRKAESIGLG 
bmy_03259T0/1-121         RL-------- ---------- ---------- ---------- RRKAESIGLG 
BACU017328/1-185          RLSAYQMTNL VPGTKYYISY LVTKGASTES SREVPMSTLP RRKAESIGLG 


                          151                                                200
ENSBTAP00000016947/1-185  MARTGGMVVI TVLLSVAMFL LVLGLIIALA LGARK 
ENSP00000264031/1-184     MARTGGMVVI TVLLSVAMFL LVLGFIIALA LGSRK 
ENSTTRP00000002765/1-172  MARTGGMVVI TVLLSVAMFL LVL------- ----- 
bmy_03259T0/1-121         MARTGGMVVI TVLLSVAMFL LVLGFIIALA LGAQK 
BACU017328/1-185          MARTGGMVVI TVLLSVAMFL LVLGFIIALA LGAQK