KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:00:03 2014 Check: 00 .. Name: bmy_03475T0/1-628 Len: 1095 Check: 557 Weight: 1.00 Name: ENSBTAP00000016933/1-1083 Len: 1095 Check: 3075 Weight: 1.00 Name: ENSP00000368761/1-1077 Len: 1095 Check: 735 Weight: 1.00 Name: BACU013555/1-799 Len: 1095 Check: 3312 Weight: 1.00 Name: ENSTTRP00000000586/1-1007 Len: 1095 Check: 4081 Weight: 1.00 // 1 50 bmy_03475T0/1-628 MSTTPFECLH ARLLLAWGVN LIFLIPPDIS RQDEAEGELS EGEHWYGNSS ENSBTAP00000016933/1-1083 VPLRSQGEIV PLRN------ -----QEYVS RQDEAEGELS EGEHWYGNSS ENSP00000368761/1-1077 MPRRKQE--Q PKRL------ -----PSHVS RQEEAEGELS EGEHWYGNSS BACU013555/1-799 MPRRKQE--Q PKRL------ -----PSHIS RQDEAEGELS EGEHWYGNSS ENSTTRP00000000586/1-1007 -PRRRET--K LIFL------ -----NSDIS RQDEAEGELS EGEHWYGNSS 51 100 bmy_03475T0/1-628 ETPSEASYGE VQENYKLSLE DRIQEQSTSP DTSLGSGTPS SHTLELVALD ENSBTAP00000016933/1-1083 ETPSEASYGE VQENYKLCLE DRIQEQSTSP DTSLGSATPS SHTLELVALD ENSP00000368761/1-1077 ETPSEASYGE VQENYKLSLE DRIQEQSTSP DTSLGSTTPS SHTLELVALD BACU013555/1-799 ETPSEASYGE VQENYKLSLE DRIQEQSTSP DTSLGSGTPS SHTLELVALD ENSTTRP00000000586/1-1007 ETPSEASYGE VQENYKLSLE DRIQEQSTSP DTSLGSGTPS SHTLELVALD 101 150 bmy_03475T0/1-628 GEVLRDPLQC PDHLSPGVSS LCDDDPAGST KPLSSNLRRL LEAGSLKLDA ENSBTAP00000016933/1-1083 GEVLRDPLQC PDHLSPGVSS LCEEDHPGST KPLSSNLRRL LEAGSLKLDA ENSP00000368761/1-1077 SEVLRDSLQC QDHLSPGVSS LCDDDP-GSN KPLSSNLRRL LEAGSLKLDA BACU013555/1-799 GEVLRDPLQC PDHLSPGVSS LCDDDPAGST KPLSSNLRRL LEAGSLKLDA ENSTTRP00000000586/1-1007 GEVLRDPLQC PDHLSPGVSS LCDDDPAGST KPLSSNLRRL LEAGSLKLDA 151 200 bmy_03475T0/1-628 TATANGRVES PVNVGSKLSF SPPSHHAQQL SVLARKLAEK HEQNDQYTPS ENSBTAP00000016933/1-1083 AATANGRVES PVNAGSNLSF SPPSHHAQQL SVLARKLAEK QEQNDQYPPS ENSP00000368761/1-1077 AATANGRVES PVNVGSNLSF SPPSHHAQQL SVLARKLAEK QEQNDQYTPS BACU013555/1-799 TATANGRVES PVNVGSNLSF SPPSHHAQQL SVLARKLAEK QEQNDQYTPS ENSTTRP00000000586/1-1007 TATANGRVES PVNV-SNLSF SPPSHHAQQL SVLARKLAEK XXXXXXXXXX 201 250 bmy_03475T0/1-628 NRFLWNQGKW LPNSTTTCGL SPDSAILKLK AAANAVLQDK SLTRTEETMR ENSBTAP00000016933/1-1083 NRFLWNQGKW LPNSTTTCGL SPDSAILKLK AAANAVLQDK SLTRTEETVR ENSP00000368761/1-1077 NRFIWNQGKW LPNSTTTCSL SPDSAILKLK AAANAVLQDK SLTRTEETMR BACU013555/1-799 NRFLWNQGKW LPNSTTTCGL SPDSAILKLK AAANAVLQDK SLTRTEETTR ENSTTRP00000000586/1-1007 XXXXXNQGKW LPNSTTTCGL SPDSAILKLK AAANAVLQDK SLTRTEETMR 251 300 bmy_03475T0/1-628 FESFSSPFSS QSASSTLAAL SKKVSERSLT PGQEHPPPAS SFLSLASMTS ENSBTAP00000016933/1-1083 FESFSSPFSS QSASSTLAAL SKKVSERSLT PGQEHPPPAS SFLSLASMTS ENSP00000368761/1-1077 FESFSSPFSS QSASSTLAAL SKKVSERSLT PGQEHPPPAS SFLSLASMTS BACU013555/1-799 FESFSSPFSS QSASSTLAAL SKKVSERSLT PGQEHPPPAS SFLSLASMTS ENSTTRP00000000586/1-1007 FESFSSPFSS QSASSTLAAL SKKVSERSLT PGQEHPPPAS SFLSLASMTS 301 350 bmy_03475T0/1-628 SAALLKEVAA RAAGTLLAEK SSLVPEDPLP PPPSEKKQDK VT---PPPPP ENSBTAP00000016933/1-1083 SAALLKEVAA RAAGTLLAEK SSLVPEDPLP PPPSEKKQEK VTPPPPPPPP ENSP00000368761/1-1077 SAALLKEVAA RAAGSLLAEK SSLLPEDPLP PPPSEKKPEK VTPPPPPPPP BACU013555/1-799 SAALLKEVAA RAAGTLLAEK SSLVPEDPLP PPPSEKKQDK VT---PPPPP ENSTTRP00000000586/1-1007 SAALLKEVAA RAAGTLLAEK SSLVPEDPLP PPPSEKKQDK VT-------- 351 400 bmy_03475T0/1-628 PPPPPPPQSL ELLLLPVPKG RVSKPSNSAS EEESGKPFQC PICGLVIKRK ENSBTAP00000016933/1-1083 PPPPPPPQSL ELLLLPVPKG RVSKPSNSAS EEESGKPFQC PICGLVIKRK ENSP00000368761/1-1077 PPPPPPPQSL ELLLLPVPKG RVSKPSNSAS EEESGKPFQC PICGLVIKRK BACU013555/1-799 PPPPPPPQSL ELLLLPVPKG RVSKPSNSAS EEESGKPFQC PICGLVIKRK ENSTTRP00000000586/1-1007 -PPPPPPQSL ELLLLPVPKG RVSKPSNSAS EEESGKPFQC PICGLVIKRK 401 450 bmy_03475T0/1-628 SYWKRHMVIH TGLKSHQCPL CPFRCARKDN LKSHMKVHQH QDRGETFQCQ ENSBTAP00000016933/1-1083 SYWKRHMVIH TGLKSHQCPL CPFRCARKDN LKSHMKVHQH QDRGETFQCQ ENSP00000368761/1-1077 SYWKRHMVIH TGLKSHQCPL CPFRCARKDN LKSHMKVHQH QDRGETFQCQ BACU013555/1-799 SYWKRHMVIH TGLKSHQCPL CPFRCARKDN LKSHMKVHQH QDRGETFQCQ ENSTTRP00000000586/1-1007 SYWKRHMVIH TGLKSHQCPL CPFRCARKDN LKSHMKVHQH QDRGETFQCQ 451 500 bmy_03475T0/1-628 LCPFTSSRHF SLKLHMRCHQ HFLRTEAKVK EEIPDPDVKG SPHLSDSTCL ENSBTAP00000016933/1-1083 LCPFTSSRHF SLKLHMRCHQ HFLRTEAKVK EETPDPEAKG PPHLSDSACL ENSP00000368761/1-1077 LCPFTSSRHF SLKLHMRCHQ HFLRTEAKVK EEIPDPDVKG SPHLSDSACL BACU013555/1-799 LCPFTSSRHF SLKLHMRCHQ HFLRTEAKVK EEIPDPDVKG SPHLSDSPCL ENSTTRP00000000586/1-1007 LCPFTSSRHF SLKLHMRCHQ HFLRTEAKVK EEIPDPDVKG SPHLSDSACL 501 550 bmy_03475T0/1-628 GQQREGGGTE LVGTMMKSST PERTSQGGAG VSPLLVKEEP KEDNGLPTSF ENSBTAP00000016933/1-1083 GQQREGGGTE LVGTMMKSST PERTSQGGAG VSPLLVKEEP KEDNGLPTSF ENSP00000368761/1-1077 GQQREGGGTE LVGTMMTSNT PERTSQGGAG VSPLLVKEEP KEDNGLPTSF BACU013555/1-799 GQQREGGGTE LVGTMMKSST PERTSQGGAG VSPLLVKEEP KEDNGLPTSF ENSTTRP00000000586/1-1007 GQQREGGGTE LVGTMMTSST PERTSQGGAG VSPLLVKEEP KEDNGLPTSF 551 600 bmy_03475T0/1-628 TLNATDRPAN HTKLREPSEY AANSASALFS QDISVKMA-- ---------- ENSBTAP00000016933/1-1083 PLNATDRPAN HTKLREPSEF AANSASALFS QDISVKMASD FLMKLSAANQ ENSP00000368761/1-1077 TLNAADRPAN HTKLKDPSEY VANSASALFS QDISVKMASD FLMKLSAANQ BACU013555/1-799 TLNATDRPAN HTKLREPSDC AANSASALFS QDISVKMASD FLMKLSAANQ ENSTTRP00000000586/1-1007 TLNATDRPAN HTKLREPSEY AANSASALFS QDISVKMASD FLMKLSAANQ 601 650 bmy_03475T0/1-628 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016933/1-1083 KEPMNLNFKI KEEPKEEETL SVTLPRSSYV FSPESEVSAA SISEDTLKPQ ENSP00000368761/1-1077 KEPMNLNFKV KEEPKEGESL STTLPRSSYV FSPESEVSAP GVSEDALKPQ BACU013555/1-799 KEPMNLNFKV KEEPKEEEAL SATLPRSNYV FSPESEVPAP SVSEDKLKPQ ENSTTRP00000000586/1-1007 KEPMNLNFKV KEEPKEEEAL SATLPRSNYV FSPESEVPAP SISEDTLKPQ 651 700 bmy_03475T0/1-628 DVEGG----- ---------- -ERSAENW-- ---------- ---------- ENSBTAP00000016933/1-1083 EAKGNVLRRD MSVKAASELL MKLSAESYKD TQMVKIKEEP MEVDIQDSQV ENSP00000368761/1-1077 EGKGSVLRRD VSVKAASELL MKLSAESYKE TQMVKIKEEP MEVDIQDSHV BACU013555/1-799 EAKGNVLRRD MSVKAASELL MKLSAESYKD TQMVKIKEEP MEVDIQDPQA ENSTTRP00000000586/1-1007 EAKGNVLRRD MSVKAASELL MKLSAESYKD TQMVKIKEEP MEVDIQDSQA 701 750 bmy_03475T0/1-628 ---------- ---------- ---------- ------FY-- LSVKMA---- ENSBTAP00000016933/1-1083 SISPSCNVGY STLIGREKTE PLQKLPEGRV APERNLFSQD ISVKMASELL ENSP00000368761/1-1077 SISPSRNVGY STLIGREKTE PLQKMPEGRV PPERNLFSQD ISVKMASELL BACU013555/1-799 SVSPSRSVGY STLIGREKTE PLQKMPEGRV PPERNLFSQD ISVKMASELL ENSTTRP00000000586/1-1007 SISPSRSVGY STLIGREKTE PLQKMPESRV PPERNLFSQD ISVKMASELL 751 800 bmy_03475T0/1-628 --VPTMISKC H--------- ---------- ------FSSL EID----NTL ENSBTAP00000016933/1-1083 FQLSEKVSKE HTQ-KENTIR TTTSPFFSED TFRQSPFTSN SKDLLPSESV ENSP00000368761/1-1077 FQLSEKVSKE HNHTKENTIR TTTSPFFSED TFRQSPFTSN SKELLPSDSV BACU013555/1-799 FQLSEKVSKE HSHTKENTIR TTTSPFFSED TFRQSPFTSN SKDLLPSESV ENSTTRP00000000586/1-1007 FQLSEKVSKE HTHTKENTIR TTTSPFFSED TFRQSPFTSN SKDLLPSESV 801 850 bmy_03475T0/1-628 LNGE------ ---------- ---------- ---------- ---------- ENSBTAP00000016933/1-1083 LHGRISAPET EKIVLEAGNG LPSWKFNDQL FPCDVCGKVF GRQQTLSRHL ENSP00000368761/1-1077 LHGRISAPET EKIVLEAGNG LPSWKFNDQL FPCDVCGKVF GRQQTLSRHL BACU013555/1-799 LHGRISAPDT ---------- ---------- ---------- ---------- ENSTTRP00000000586/1-1007 LHGRISAPET EKIVLEAGNG LPSWKFNDQL FPCDVCGKVF GRQQTLSRHL 851 900 bmy_03475T0/1-628 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016933/1-1083 SLHTEERKYK CHLCPYAAKC RANLNQHLTV HSVKLVSTDT EDIVSAVTSE ENSP00000368761/1-1077 SLHTEERKYK CHLCPYAAKC RANLNQHLTV HSVKLVSTDT EDIVSAVTSE BACU013555/1-799 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000586/1-1007 SLHTEERKYK CHLCPYAAKC RANLNQHLTV HSVKLVSTDT EDIVSAVTSE 901 950 bmy_03475T0/1-628 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016933/1-1083 GSDGKKHPYY YSCHVCGFET ELNVQFVSHM SLHVDKEQWM FSICCTACDF ENSP00000368761/1-1077 GSDGKKHPYY YSCHVCGFET ELNVQFVSHM SLHVDKEQWM FSICCTACDF BACU013555/1-799 ---------- ------SFEQ R--------- ---------- ---------- ENSTTRP00000000586/1-1007 GSDGEKHPYY YXCHVCGFET ELNVQFVSHM SLHVDKEQWM FSICCTACDF 951 1000 bmy_03475T0/1-628 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016933/1-1083 VTMEEAEIKA HIGTKHTGED RKTPSESNSP SSSSLSALSD SANSKDDSDS ENSP00000368761/1-1077 VTMEEAEIKT HIGTKHTGED RKTPSESNSP SSSSLSALSD SANSKDDSDG BACU013555/1-799 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000586/1-1007 VTMEETEIKA HIGTKHTGED RKTPSESNSP SSSSLSALSD SANSKDDSDS 1001 1050 bmy_03475T0/1-628 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016933/1-1083 SQKNKSGSNL LVISVMPGSQ PSLNSEEKPE KGFECVFCNF VCKTKNMFER ENSP00000368761/1-1077 SQKNKGGNNL LVISVMPGSQ PSLNSEEKPE KGFECVFCNF VCKTKNMFER BACU013555/1-799 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000586/1-1007 SQKNKSGNNL LVISVVPGSQ PSLNSEEKPE K--------- ---------- 1051 1100 bmy_03475T0/1-628 ---------- ---------- ---------- ---------- ----- ENSBTAP00000016933/1-1083 HLQIHLITRM FECDVCHKFM KTPEQLLEHK KCHTVPTGGL NSGQW ENSP00000368761/1-1077 HLQIHLITRM FECDVCHKFM KTPEQLLEHK KCHTVPTGGL K---- BACU013555/1-799 ---------- ---------- ---------- ---------- ----- ENSTTRP00000000586/1-1007 ---------- ---------- ---------- ---------- -----