KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:00:01 2014 Check: 00 .. Name: ENSP00000386212/1-300 Len: 300 Check: 8013 Weight: 1.00 Name: ENSBTAP00000016922/1-289 Len: 300 Check: 3440 Weight: 1.00 Name: ENSTTRP00000016613/1-259 Len: 300 Check: 3367 Weight: 1.00 Name: bmy_13931T0/1-291 Len: 300 Check: 2602 Weight: 1.00 Name: BACU008642/1-291 Len: 300 Check: 2760 Weight: 1.00 // 1 50 ENSP00000386212/1-300 MALQDVCKWQ SPDTQGPSPH LPRAGGWAVP RGCDPQTFLQ IHGPRLAHGT ENSBTAP00000016922/1-289 MALQDVCKWQ APDTQETSPH LPQAGSWAVP RGWDPQAFLQ THGPRLAHGT ENSTTRP00000016613/1-259 MALQDVCKWQ APDTQEASPH LPQAGGWALP QGWDPQTFLQ IHGPRLAHGT bmy_13931T0/1-291 MALQDVCKWQ APGTQEASPH LPQAGGWAVP QGWDPQTFLQ IHGPRLAHGT BACU008642/1-291 MALQDVCKWQ APDTREASPH LPQAGGWALP QGWDPQTFLQ IHGPRLAHGT 51 100 ENSP00000386212/1-300 TTLAFRFRHG VIAAADTRSS CGSYVACPAS CKVIPVHQHL LGTTSGTSAD ENSBTAP00000016922/1-289 TTLAFRFRHG VIAAADTRSS CGNYVECPAS RKVIPVHQHL LGTTSGTSAD ENSTTRP00000016613/1-259 TTLAFRFRHG VIAAADTRSS CGDYVACPAS RKVIPVHQHL LGTTSGTSAD bmy_13931T0/1-291 TTLAFRFRHG VIAAADTRSS CGDYVACPAS RKVIPVHRHL LGTTSGTSAD BACU008642/1-291 TTLAFRFRHG VIAAADTRSS CGNYVACPAS RKVIPVHRHL LGTTSGTSAD 101 150 ENSP00000386212/1-300 CATWYRVLQR ELRLRELREG QLPSVASAAK LLSAMMSQYR GLDLCVATAL ENSBTAP00000016922/1-289 CVTWYRVLQR ELRLRALREG QLPSVAGAAK LLSVMMSRYR GLDLCVATAL ENSTTRP00000016613/1-259 CATWYRVLQR ELRLRALREG QLPSVAGAAR LLSVMMSRYR GLDLCMATAL bmy_13931T0/1-291 CVTWYRVLQR ELRLRELREG QLPSVAGAAR LLSVMMSRYR GLDLCVATAL BACU008642/1-291 CVTWYRVLRR ELRLRELREG QLPSVAGAAR LLSVMMSRYR GLDLCVATAL 151 200 ENSP00000386212/1-300 CGWDRSGPEL FYVYSDGTRL QGDIFSVGSG SPYAYGVLDR GYRYDMSTQE ENSBTAP00000016922/1-289 CGWDRSGPAL FYVYSDGTCL QGNIFSVGSG SPYAYGVLDR GYRYDMSTQE ENSTTRP00000016613/1-259 CGWDRSGPAL FYVYSDGTCL QGDIFSVGSG SPYAYGVLDG GYHYDMSTQE bmy_13931T0/1-291 CGWDRSGPAL FYVYSDGTCL QGDIFSVGSG SPYAYGVLDG GYRYDMSTQE BACU008642/1-291 CGWDRSGPAL FYVYSDGTCL QGDIFSVGSG SPYAYGVLDG GYRYDMSTQE 201 250 ENSP00000386212/1-300 AYALARCAVA HATHRDAYSG GSVDLFHVRE SGWEHVSRSD ACVLYVELQK ENSBTAP00000016922/1-289 AYALARCAVA HATRRDAYSG GSVDLFHVRE SGWEYVSRHD AWVLYSELQK ENSTTRP00000016613/1-259 AYALARRAVA HATHRDAYSG GSVDLFHVRE SGWEYVSRND A-VLYSD--E bmy_13931T0/1-291 AYALARRAVA HATHRDAYSG GSVDLFHVRE SGWEYVSRND AWVLYSELRE BACU008642/1-291 AYALARRAVA HATHRDAYSG GSVDLFHVRE SGWEYVSHND AWVLYSELRE 251 300 ENSP00000386212/1-300 LLEPEPEEDA SHAHPEPATA HRAAEDRELS VGPGEVTPGD SRMPAGTETV ENSBTAP00000016922/1-289 LP--GPEKE- ---WEEEATP DRAGEGREPS VGL---APGD LKVP--TERL ENSTTRP00000016613/1-259 LP-PGPEQ-- -----EESHP ---------- ---------- ---------- bmy_13931T0/1-291 LPGPGPEQE- ---REEEAIP DRAGEGGGPS VAP---APGD SRMP--AETL BACU008642/1-291 LPGLGPEQE- ---REEEATP DRAGEGGGPS VAP---APGD SRMP--TETL