KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:59:20 2014 Check: 00 .. Name: ENSP00000387334/1-975 Len: 1507 Check: 1763 Weight: 1.00 Name: ENSTTRP00000005184/1-955 Len: 1507 Check: 5459 Weight: 1.00 Name: ENSBTAP00000016601/1-973 Len: 1507 Check: 81 Weight: 1.00 Name: bmy_03244T0/1-912 Len: 1507 Check: 5833 Weight: 1.00 Name: BACU017342/1-1455 Len: 1507 Check: 9757 Weight: 1.00 // 1 50 ENSP00000387334/1-975 MRWGHHLPRA SWGSGFRRAL QRPDDRIPFL IHWSWPLQGE RPFGPPRAFI ENSTTRP00000005184/1-955 MRWGCHLPRA SWGPGLGRVL QPAXXXXXXL IHWSWPIKGE RPLGPPRAFI ENSBTAP00000016601/1-973 MRWGCHLPRA SWSPGLRRVL QPADERIPFL IHWSWPLKGE RPLGSPRAFI bmy_03244T0/1-912 MSCSELCPVT QPGACLSRV- ---------- ---------- -----ARAFI BACU017342/1-1455 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000387334/1-975 RHHGSSVDSA PPPGRHGRLF PSASATEAIQ RHRRNLAEWF SRLPREERQF ENSTTRP00000005184/1-955 RHHGSSAGSG PPSGRHGQLF QGIAAAEAIQ RHRQNLAEWF SRLPREERQF ENSBTAP00000016601/1-973 RHNGSSVGNG PSSGRHGQLF RGIAASEALQ RHRHNLAEWF SRLPREERQF bmy_03244T0/1-912 RHHGSSVGSG PPSGRHGQLF QGIAAAEAIQ RHRQNLAEWF SRLPREERQF BACU017342/1-1455 RHHGSSAGSG PPSGRHGQLF QGIAAAEAIQ RHRQNLAEWF SRLPREERQF 101 150 ENSP00000387334/1-975 GPTFALDTVH VDPVIRESTP DELLRPPAEL ALEHQPPQAG LPPLALSQLF ENSTTRP00000005184/1-955 GPTFALDTVH VDPVIRESTP DELLRPLAEL ALEHQPPSAG LPPLALSQLF ENSBTAP00000016601/1-973 GPTFALDTVH VDPVIRESTP DELLRPLAEL ALEHQPPSAG LPPLALSQLF bmy_03244T0/1-912 GPTFALDTVH VHPVIRESSP DELLRPLAEL ALEHQPPSAG LPPLALSQLF BACU017342/1-1455 GPTFALDTVH VDPVIRESSP DELLRPLAEL ALEHQPPSAG LPPLALSQLF 151 200 ENSP00000387334/1-975 NPDACGRRVQ TVVLYGTVGT GKSTLVRKMV LDWCYGRLPA FELLIPFSCE ENSTTRP00000005184/1-955 DPDACGRRVQ TVVLYGTVGT GKSTLVRKMV LDWCYGQLPA FKLLIPFSCE ENSBTAP00000016601/1-973 DPDACGRRVQ TVVLYGTVGT GKSTLVRKMV LDWCYGRLPA FELLIPFSCE bmy_03244T0/1-912 DPDASGRRVQ TVVLYGTVGT GKSTLVRKMV LDWCHGRLPA FKLLIPFSCE BACU017342/1-1455 DPDASGRRVQ TVVLYGTVGT GKSTLVRKMV LDWCHGRLPA FKLLIPFSCE 201 250 ENSP00000387334/1-975 DLSSLGPAPA SLCQLVAQRY TPLKEVLPLM AAAGSHLLFV LHGLEHLNLD ENSTTRP00000005184/1-955 DLSSLGPAPA SLCQLVAQRY TPLKEILPLM AAAGSCLLFV LHGLEHLNLD ENSBTAP00000016601/1-973 DLSSLGPAPA SLCQLVAQRY TPLKEILPLM AAAGSRLLFV LHGLEHLNLN bmy_03244T0/1-912 DLSSLGPAPA SLCQLVAQRY TPLKETLPLM AAAGSRLLFV FHGLEHLNLD BACU017342/1-1455 DLSSLGPAPA SLCQLVAQRY TALKETLPLM AAAGSRLLFV FHGLEHLNLD 251 300 ENSP00000387334/1-975 FRLAGTGLCS DPEEPQEPAA IIVNLLRKYM LPQASILVTT RPSAIGRIPS ENSTTRP00000005184/1-955 FRLAGTGLCS DPEESEAPAA IIVNLLRKYM LPEASILVTT RPSAIGRIPS ENSBTAP00000016601/1-973 FSLASTGLCS DPEKPEAPAA IIINLLRKYM LPEASILVTT RPSAIGRIPS bmy_03244T0/1-912 FQLAGTGLCS DPEESEAPAA IIVNLLRKYM LPE------- ---------- BACU017342/1-1455 FRLVGTGLCS DPEESEAPAA IIVNLLRKYM LPEASILVTT RPSAIGRIPS 301 350 ENSP00000387334/1-975 KYVGRYGEIC GFSDTNLQKL YFQLRLNQPY CGYAVGGSGV SATPAQRDHL ENSTTRP00000005184/1-955 KYVDRYGEIC GFSDTNLQKL YFQLRFKQPD CGHGAG--GF SATPAQRDHL ENSBTAP00000016601/1-973 KYVGRYGEIC GFSDTNLQKL YFQLRLNQPD CGPGAG--GV SVTPAQRDHL bmy_03244T0/1-912 ---------- --------KL YFQLRLNQPD HRHGAG--GV SATPAQRDHL BACU017342/1-1455 KYVGRYGKIC GFSDTNLQKL YFQLRLNQPD CRHGAG--GV SATPAQRDHL 351 400 ENSP00000387334/1-975 VQMLSRNLEG HHQIAAACFL PSYCWLVCAT LHFLHAPTPA GQTLTSIYTS ENSTTRP00000005184/1-955 VQMLSRNLEG HHQIATACFL PSYCWLVCAT LHFLHAPTPA GQTLTSIYTS ENSBTAP00000016601/1-973 VQMLTRNLEG HHQIAAACFL PSYCWLVCAT LHFLHAPTPA GQTLTSIYTS bmy_03244T0/1-912 VQMLSRNLEG HHQIAAACFL PSYCWLVCAT LHFLHAPTPA GQTLTSIYTS BACU017342/1-1455 VQMLSRNLEG HHQIAAACFL PSYCWLVCAT LHFLHAPTPA GQTLTSIYTS 401 450 ENSP00000387334/1-975 FLRLNFSGET LDSTDPSNLS LMAYAARTMG KLAYEGVSSR KTYFSEEDVC ENSTTRP00000005184/1-955 FLHLNFSGEM LDSTDPSKLS LMAYAARTMG KLAYEGVSSR KTYFSEEDVH ENSBTAP00000016601/1-973 FLRLNFSGEM LDSTDPSKLS LMAYAARTMG KLAYEGVSSR KTYFSEEDVR bmy_03244T0/1-912 FLHLNFSGKM LDSTDPSKLS LMAYAARTMG KLAYEGVSSR KTYFSEEDVR BACU017342/1-1455 FLHLNFSGEM LDSTDPSKLS LMAYAARTMG KLAYEGVSSR KTYFSEEDVR 451 500 ENSP00000387334/1-975 GCLEAGIRTE EEFQLLHIFR RDALRFFLAP CVEPGRAGTF VFTVPAMQEY ENSTTRP00000005184/1-955 G-LEAGIQTE EE-QLLXXXX XXXXXXXXXX XXXXXXXXXX XFTVPAM-EY ENSBTAP00000016601/1-973 GCLEAGVQTE EEFQLLHVFR RDALRFFLAP CVEPGHTGTF VFTVPAMQEY bmy_03244T0/1-912 GCLEAGIQTE EEFQLLHVFR RDALRFFLAP CVEPGHLGTF VFTVPAMQEY BACU017342/1-1455 GCLEAGIQTE EEFQLLHVFR RDALRFFLAP CVEPGHLGTF VFTVPAMQEY 501 550 ENSP00000387334/1-975 LAALYIVLGL RKTTLQKVGK EVAELVGRVG EDVSLVLGIM AKLLPLRALP ENSTTRP00000005184/1-955 --AAYIVLGL LKTTLQRVGK EVAELMSRV- EDVSLVLGIM AKLLPLR-LP ENSBTAP00000016601/1-973 LAALYIVLGL RKTTLQRVGK EVAELVGRVG EDVSLVLGIV AKLLPLRALP bmy_03244T0/1-912 LAALYIVLGL RKTTLQRVGK EVAELVGRVG EDISLVLGIM AKLLPLRALP BACU017342/1-1455 LAALYIVLGL RKTTLQRVGK EVAELVGRVG EDISLVLGIM AKLLPLRALP 551 600 ENSP00000387334/1-975 LLFNLIKVVP RVFGRMVGKS REAVAQAMVL EMFREEDYYN DDVLDQMGAS ENSTTRP00000005184/1-955 LLFNLLKVVP RVFGRVVGKS RETVAQAMVL EMFREEDYYN DDVLDQMGAS ENSBTAP00000016601/1-973 LLFNLLKVVP RVFGRVVGKS REAVAQAMVL EMFREEDYYN DDVLDQMGAS bmy_03244T0/1-912 LLFNLLKVVP RVFGRVVVKS RKAVAQAMVL EMFREEDYYN DDVLDQMGAS BACU017342/1-1455 LLFNLLKVVP RVFWRVVGKS REAVAQAMVL EMFREEDYYN DDVLDQMGAS 601 650 ENSP00000387334/1-975 ILGVEGPRRH PDEPPEDEVF ELFPMFMGGL LSAHNRAVLA QLGCPIKNLD ENSTTRP00000005184/1-955 ILGVEGPRCR SDEPTEDEVF ELFPMFMGGL LSAHNRVVLA QLGCPIKTLD ENSBTAP00000016601/1-973 ILGVEGPRRH PDEPPDDEVF ELFPMFMGGL LSAHNRAVLA QLGCPIKTLD bmy_03244T0/1-912 ILGVEGPRCH LDEPTEDEVF ELFPMFMGGL LSAHNRVVLA QLGCPIKTLD BACU017342/1-1455 ILGVEGPRCH PDEPTEDEVF ELFPIFMGGL LSAHNRVVLA QLGCPIKTLD 651 700 ENSP00000387334/1-975 ALENAQAIKK KLGKLGRQVL PPSELLDHLF FHYEFQNQRF SAEVLSSLRQ ENSTTRP00000005184/1-955 ALENAQAIKK KLGKLGRQVL PPSELLDHLF FHYEFQNQRF SAEVLSSLRQ ENSBTAP00000016601/1-973 ALENAQAIKK KLGKLGRQVL PPSELLDHLF FHYEFQNQRF SAEVLGSLRQ bmy_03244T0/1-912 ALENAQAIKR KLGKLGRQVL PPSELLDHLF FHYEFQNQRF SAEVLGSLSQ BACU017342/1-1455 ALENAQAIKR KLGKLGRQVL PPSELLDHLF FHYEFQNQRF SAEVLGSLRQ 701 750 ENSP00000387334/1-975 LNLAGVRMTP VKCTVVAAVL GSGRHALDEV NLASCQLDPA GLRTLLPVFL ENSTTRP00000005184/1-955 LNLAGVRMTP LKCMVVAAVL GSGRHALDEV NFASCQLDPA GLRTLRPVFL ENSBTAP00000016601/1-973 LNLAGVRMTP LKCTVVATVL GSGRHALDEV NLASCQLDPA GLRTLMPVFL bmy_03244T0/1-912 LNLAGVRMTP LKCTVVAAVL GSGRHALDEV NLASCQLDPA GLRTLRPVFL BACU017342/1-1455 LNLAGVRMTP LKCTVVAAVL GSGRHALDEV NLASCQLDPA GLRTLRPVFL 751 800 ENSP00000387334/1-975 RARKLGLQLN SLGPEACKDL RDLLLHDQCQ ITTLRLSNNP LTAAGVAVLM ENSTTRP00000005184/1-955 RARKLGLQLN SLGPEACRDL RDLLLHDQCQ VTTLRLSNNP LTAAGVALLV ENSBTAP00000016601/1-973 RARKLGLQLN SLGPEACRDL RDLLLHDQCQ VTTLRLSNNP LMAAGVALLL bmy_03244T0/1-912 RAQKLGLQLN SLGPEACRDL RDLLLHDQCQ VTTLRLSNNP LTAAGVALLV BACU017342/1-1455 RAQKLGLQLN SLGPEACRDL RDLLLHDQCQ VTTLRLSNNP LTAAGVALLV 801 850 ENSP00000387334/1-975 EGLAGNTSVT HLSLLHTGLG DEGLELLAAQ LDRNRQLQEL NVAYNGAGDT ENSTTRP00000005184/1-955 EGLAGNTSLK HLSLLHTGLG DEGLELLAAQ LDRNQQLQEL NVAYNGL-DT ENSBTAP00000016601/1-973 EGLAGNTSLK HLSLLHTGLG DEGLELLAAQ LDRNQQLQEL NVAYNGAGDT bmy_03244T0/1-912 EGLAGNTSLK HLSLLHTGLG DEGLELLAAQ LDRNQQLQEL NVAYNGAGDT BACU017342/1-1455 EGLAGNTSLK HLSLLHTGLG DEGLELLAAQ LDRNQQLQEL NVAYNGAGDT 851 900 ENSP00000387334/1-975 AALALARAAR EHPSLELLHL YFNELSSEGR QVLRDLGGAA EGGARVVVSL ENSTTRP00000005184/1-955 AALP------ --PRLP--GL YFNELSSECR QALRDLGSTT EGGARVVVSL ENSBTAP00000016601/1-973 AALALAKAAW KHPSLELLHL YFNELSSECR QALRDLGSAA EGGARVVVSL bmy_03244T0/1-912 AALALAKAAR EHPSLELLHL YFNELSSECR QALRDLGNTT EGSARVVVSL BACU017342/1-1455 AALALAKAAR EHPSLELLHL YFNELSSECR QALRDLGSTT EGSAQVVVSL 901 950 ENSP00000387334/1-975 TEGTAVSEYW SVILSEVQRN LNSWDRARVQ RHLELLLRDL EDSRGATLNP ENSTTRP00000005184/1-955 TEGTAVSEYW SVILGEVQRN LNSWDRGRVR RHLELLLRDL EDNRGATLNP ENSBTAP00000016601/1-973 TEGTAVSEYW SVILGEVQRN LNSWDRGRVR RHLELLLRDL EDNRGATLNP bmy_03244T0/1-912 TEGTAVSEYW SVILGEVQRN LNSWDRGRVR CHLELLLRDL EDNRGGTLNP BACU017342/1-1455 TEGTAVSEYW SVILGEVQRN LNSWDRGRVR RHLELLLRDL EDNRGGTLNP 951 1000 ENSP00000387334/1-975 WRKAQLLRVE GEV------- ---------- ---------- ---------- ENSTTRP00000005184/1-955 WRKAQLLRVE GEV------- ---------- ---------- ---------- ENSBTAP00000016601/1-973 WRKAQLLRVE GEV------- ---------- ---------- ---------- bmy_03244T0/1-912 WRKAQLLRVE GEV------- ---------- ---------- ---------- BACU017342/1-1455 WRKAQLLRVE GEAASWRRRD VARKFEFNPK LGIDNPVLSL AEDHEPSDLW 1001 1050 ENSP00000387334/1-975 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005184/1-955 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016601/1-973 ---------- ---------- ---------- ---------- ---------- bmy_03244T0/1-912 ---------- ---------- ---------- ---------- ---------- BACU017342/1-1455 SLERPRFYLL NREEGRSFGF HLQQQQGRAG HVVCRVEPGA SAQRQGLREG 1051 1100 ENSP00000387334/1-975 ---------- ---------- --------RA LLE------- ---------- ENSTTRP00000005184/1-955 ---------- ---------- --------RA LLE------- ---------- ENSBTAP00000016601/1-973 ---------- ---------- --------RA LLE------- ---------- bmy_03244T0/1-912 ---------- ---------- --------RA LLE------- ---------- BACU017342/1-1455 DRILGVNNHV VEHEDYSVVI RRIRASGPRV LLTVLAQHVH EVALAQRGND 1101 1150 ENSP00000387334/1-975 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005184/1-955 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016601/1-973 ---------- ---------- ---------- ---------- ---------- bmy_03244T0/1-912 ---------- ---------- ---------- ---------- ---------- BACU017342/1-1455 AHLCPTLGRG VRPRLCHVVK DEGGFGFSIT QGHRGPFWLV LSTGGAAERA 1151 1200 ENSP00000387334/1-975 ---------- ---------- ---------- ---------- ---------Q ENSTTRP00000005184/1-955 ---------- ---------- ---------- ---------- ---------Q ENSBTAP00000016601/1-973 ---------- ---------- ---------- ---------- ---------Q bmy_03244T0/1-912 ---------- ---------- ---------- ---------- ---------Q BACU017342/1-1455 GVPPGARLLE VNGVSVEKFT HNQLSKKLWQ SGKQVTLLVA GPEVEEQCRQ 1201 1250 ENSP00000387334/1-975 LG-------- ---------- ---------- ---------- ---------- ENSTTRP00000005184/1-955 LG-------- ---------- ---------- ---------- ---------- ENSBTAP00000016601/1-973 LG-------- ---------- ---------- ---------- ---------- bmy_03244T0/1-912 LG-------- ---------- ---------- ---------- ---------- BACU017342/1-1455 LGMPLAAPLA EGWALPTKPR YLHLEKGPQG FGFMLREEKG LDGRLGQFLW 1251 1300 ENSP00000387334/1-975 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005184/1-955 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016601/1-973 ---------- ---------- ---------- ---------- ---------- bmy_03244T0/1-912 ---------- ---------- ---------- ---------- ---------- BACU017342/1-1455 EVDPGLPAEK AGMQAGDRLV AVAGESVEGL GHEETVSKIR AQGSCVSLIV 1301 1350 ENSP00000387334/1-975 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005184/1-955 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016601/1-973 ---------- ---------- ---------- ---------- ---------- bmy_03244T0/1-912 ---------- ---------- ---------- ---------- ---------- BACU017342/1-1455 VDPEADRFFN MVRLSPLLFL ESTEAPDSPQ DTGSASLVET KDPPVEDTTV 1351 1400 ENSP00000387334/1-975 ---------- -SSGS----- ---------- ---------- ---------- ENSTTRP00000005184/1-955 ---------- -GPGS----- ---------- ---------- ---------- ENSBTAP00000016601/1-973 ---------- -GPGS----- ---------- ---------- ---------- bmy_03244T0/1-912 ---------- -GPGS----- ---------- ---------- ---------- BACU017342/1-1455 PCGFRQCFLY PGPGGGYGFR LSCVASGPHL FISQVTDAPG TLDLLNHLPL 1401 1450 ENSP00000387334/1-975 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005184/1-955 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016601/1-973 ---------- ---------- ---------- ---------- ---------- bmy_03244T0/1-912 ---------- ---------- ---------- ---------- ---------- BACU017342/1-1455 DKSSSASLPE PQYTQQTFLW CSKLYIPPFH QVTLGGSAAR AGLQMGDVIL 1451 1500 ENSP00000387334/1-975 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005184/1-955 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016601/1-973 ---------- ---------- ---------- ---------- ---------- bmy_03244T0/1-912 ---------- ---------- ---------- ---------- ---------- BACU017342/1-1455 EVNGYPMGGE NDLERLQQLA EAEPPLCLKL AARSQQGLEA WIPPGSGEDW 1501 1550 ENSP00000387334/1-975 ------- ENSTTRP00000005184/1-955 ------- ENSBTAP00000016601/1-973 ------- bmy_03244T0/1-912 ------- BACU017342/1-1455 AVASDLL