KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:59:01 2014 Check: 00 .. Name: ENSP00000357177/1-1562 Len: 1587 Check: 1042 Weight: 1.00 Name: ENSBTAP00000016407/1-1562 Len: 1587 Check: 8657 Weight: 1.00 Name: ENSTTRP00000013766/1-1548 Len: 1587 Check: 4571 Weight: 1.00 Name: bmy_03437T0/1-1013 Len: 1587 Check: 3960 Weight: 1.00 Name: BACU003917/1-1530 Len: 1587 Check: 2861 Weight: 1.00 // 1 50 ENSP00000357177/1-1562 ---------M SVRLPQSIDR LSSLSSLGDS APERKSPSHH RQPSDASETT ENSBTAP00000016407/1-1562 ---------S LMCFSYSFSR LSSL-SLGDS APERKSPSHH RQPSDTSETT ENSTTRP00000013766/1-1548 ---------M SVRLPQSIDR LSSL-SLGDS APERKSPSHH RQPSDTSETT bmy_03437T0/1-1013 MEDWAKGQGS ASKKQSHLSR LSSL-SLGDS APERKSPSHH RQPSDTSETT BACU003917/1-1530 MEDWAKGQG- ---------- LSSL-SLGDS APERKSPSHH RQPSDTSETT 51 100 ENSP00000357177/1-1562 GLVQRCVIIQ KDQHGFGFTV SGDRIVLVQS VRPGGAAMKA GVKEGDRIIK ENSBTAP00000016407/1-1562 GLVQRCVIIQ RDQHGFGFTV SGDRIVLVQS VRPGGAAMKA GVKEGDRIIK ENSTTRP00000013766/1-1548 GLVQRCVIIQ KDQHGFGFTV SGDRIVLVQS VRPGGAAMKA GVKEGDRIIK bmy_03437T0/1-1013 GLVQRCVIIQ KDQHGFGFTV SGDRIVLVQS VRPGGAAMKA GVKEGDRIIK BACU003917/1-1530 GLVQRCVIIQ KDQHGFGFTV SGDRIVLVQS VRPGGAAMKA GVKEGDRIIK 101 150 ENSP00000357177/1-1562 VNGTMVTNSS HLEVVKLIKS GAYVALTLLG SSPSSMGISG LQQDPSPAGA ENSBTAP00000016407/1-1562 VNGTMVTNSS HLEVVKLIKS GAYVALTLLG SSPSSVGVSG PQQDPAPAGA ENSTTRP00000013766/1-1548 VNGTMVTNSS HLEVVKLIKS GAYVALTLLG SSPSSIGVSG PQQEPVPAGA bmy_03437T0/1-1013 VNGTMVTNSS HLEVVKLIKS GAYVALTLLG SSPSSIGVSG PQQDPVPAGA BACU003917/1-1530 VNGTMVTNSS HLEVVKLIKS GAYVALTLLG SSPSSIGVSG PQQDPVPAGA 151 200 ENSP00000357177/1-1562 PRITSVIPSP PPPPPLPPPQ RITGPKPLQD PEVQKHATQI LRNMLRQEEK ENSBTAP00000016407/1-1562 PRVTPVVPPP PPPPPLPPPQ RITGPRPLQD PEFQKHATQI LRNMLRQEEK ENSTTRP00000013766/1-1548 PRVTPVIPPP PPPPPLPPPQ RITGPKPLQD PEFQKHATQI LRNMLRQEEK bmy_03437T0/1-1013 PRVTPVIPPP PPPPPPPPPQ RITGPKPLQD PEFQKHATQI LRNMLRQEEK BACU003917/1-1530 PRVTPVIPPP PPPPPLPPPQ RITGPKPLQD PEFQKHATQI LRNMLRQEEK 201 250 ENSP00000357177/1-1562 ELQRICEVYS RNPASLLEEQ IEGARRRVTQ LQLKIQQETG GSVDILPLYG ENSBTAP00000016407/1-1562 ELQRICEVYS RNPASLLEEQ IEGARRRVTQ LQLKIQQETG GLVDILPVYG ENSTTRP00000013766/1-1548 ELQRICEVYS RNPGSLLEEQ IEGARRRVTQ LQLKIQQETG GLVDILPLYG bmy_03437T0/1-1013 ELQRICEVYS RNPGSLLEEQ IEGARRRVTQ LQLKIQQETG GLVDILPLYG BACU003917/1-1530 ELQRICEVYS RNPGSLLEEQ IEGARRRVTQ LQLKIQQETG GLVDILPLYG 251 300 ENSP00000357177/1-1562 DTSQRPSEGR LSLDSQEGDS GLDSGTERFP SLSESLMNRN SVLSDPGLDS ENSBTAP00000016407/1-1562 DTSQRSSEGR LSLDSQEGDS GLDSGTERFP SLSESLVNRN SVLSDAGLDS ENSTTRP00000013766/1-1548 DTSQRSSEGR LSLDSQEGDS GLDSGTERFP SLGESLVNRN SVLSDPGPDS bmy_03437T0/1-1013 DTSQRSSEGR LSLDSQEGDS GLDSGTERFP SLGE------ ---------- BACU003917/1-1530 DTSQRSSEGR LSVDSQEGDS GLDSGTERFP SLGESLVNRN SVLSDPGLDS 301 350 ENSP00000357177/1-1562 PRTSPVIMAR VAQHHRRQGS DAAVPSTGDQ GVDQSPKPLI IGPEEDYDPG ENSBTAP00000016407/1-1562 PRTSPVTMAR LAQRHRRQGS DAPVPPSSDQ GVDQSPKPLI IGPEEDYDPG ENSTTRP00000013766/1-1548 PRTSPVIMAR VAQHHRRQGS DALVPPSCDQ AVDQSPKPLI IGPEEDYDPG bmy_03437T0/1-1013 ---------- ---------- ---------- GVDQSPKPLI IGPEEDYDPG BACU003917/1-1530 PRTSPVIMAR VAQHHRRQGS DALVPPSSDQ GVDQSPKPLI IGPEEDYDPG 351 400 ENSP00000357177/1-1562 YFNNESDIIF QDLEKLKSRP AHLGVFLRYI FSQADPSPLL FYLCAEVYQQ ENSBTAP00000016407/1-1562 YFNNESDIIF QDFEKLKSRP AHLGVFLRYI FSQADPSPLL FYLCAEVYQQ ENSTTRP00000013766/1-1548 YFNNESDIIF QDFEKLKSRP AHLGVFLRYI FSQADPSPLL FYLCAEVYQQ bmy_03437T0/1-1013 YFNNESDIIF QDFEKLKSRP AHLGVFLRYI FSQADPSPL- ---------- BACU003917/1-1530 YFNNESDIIF QDFEKLKSRP AHLGVFLRYI FSQADPSPLL FYLCAEVYQQ 401 450 ENSP00000357177/1-1562 ASPKDSRSLG KDIWNIFLEK NAPLRVKIPE MLQAEIDSRL RNSEDARGVL ENSBTAP00000016407/1-1562 TNPKDSRSLG KDIWNIFLEK NAPLRVKVPE MLQAEIDLRL RSSEDVRAAL ENSTTRP00000013766/1-1548 TNPKDSRSLG KDIWNIFLEK NAPLRVKVPE MLQAEIDLRL RNGEDVRAVL bmy_03437T0/1-1013 ---------- ---------- --PLRVKVPE MLQAEIDLRL RSGEDVRTVL BACU003917/1-1530 TNPKDSRSLG KDIWNIFLEK NAPLRVKVPE MLQAEIDLRL RSGEDVRTVL 451 500 ENSP00000357177/1-1562 CEAQEAAMPE IQEQIHDYRT KRTLGLGSLY GENDLLDLDG DPLRERQVAE ENSBTAP00000016407/1-1562 CEAQEAAMPE IQEQIHDYRT KRTLGLGSLY GENDLLELDG DPLHERQVAE ENSTTRP00000013766/1-1548 CEAQEAAMPE IQEQIHDYRT KRTLGLGSLY GENDLLDLDG DPLRERQVAE bmy_03437T0/1-1013 CEAQEAAMPE IQEQIHDYRT KRTLGLGSLY GENDLLDLDG DPLRERQVAE BACU003917/1-1530 CEAQEAAMPE IQEQIHDYRT KRTLGLGSLY GENDLLDLDG DPLRERQVAE 501 550 ENSP00000357177/1-1562 KQLAALGDIL SKYEEDRSAP MDFALNTYMS HAGIRLREAR PSNTAEKAQS ENSBTAP00000016407/1-1562 KQLAALGDIL SKYEEDRSGP MGFALNTYMS HAGIRLRETR PPNTAEKAQS ENSTTRP00000013766/1-1548 KQLAALGDIL SKYEEDRSAP MDFALNTYMS HAGIRLREAR PSNTAEKAQS bmy_03437T0/1-1013 KQLAALGDIL SKYEEDRSAP MDFALNTYMS HAGIRLREAR PSNTAEKAQS BACU003917/1-1530 KQLAALGDIL SKYEEDRSAP MDFALNTYMS HAGIRLREAR PSNTAEKAQS 551 600 ENSP00000357177/1-1562 APDKDKWLPF FPKTKK-SSN SKKEKDALED KKRNPILKYI GKPKSSSQST ENSBTAP00000016407/1-1562 APDKDKWLPF FPKTKKQSSN SKKDKDALED KKRNPILKYI GKPKTSSQST ENSTTRP00000013766/1-1548 APDKD----- -------SSN SKKEKDALED KKRNPILKYI GKPKSSSQST bmy_03437T0/1-1013 APDKDKWLPF FPKTKKQSSN SKKEKDALED KKRNPILKYI GKPKSSSQST BACU003917/1-1530 APDKDKWLPF FPKTKKQSSN AKKEKDALED KKRNPILKYI GKPKSSSQST 601 650 ENSP00000357177/1-1562 FHIPLSPVEV KPGNVRNIIQ HFENNQQYDA PEPGTQRLST GSFPEDLLES ENSBTAP00000016407/1-1562 FYIPLSPVEV KPGNVRNIIQ HFENNQQYDA PEPGTQRLST GSFPEDLLES ENSTTRP00000013766/1-1548 FHIPLSPVEV KPGNVRNIIQ HFENNQQYDA PEPGMQRLST GSFPEDLLES bmy_03437T0/1-1013 FHIPLSPVEV KPGNVRNIIQ HFENNQQYDA PEPGTQRLST GSFPEDLLES BACU003917/1-1530 FHIPLSPVEV KPGNVRNIIQ HFENNQQYDA PEPGTQRLST GSFPEDLLES 651 700 ENSP00000357177/1-1562 DSSRSEIRLG RSESLKGREE MKRSRKAENV PRSRSDVDMD AAAEATRLHQ ENSBTAP00000016407/1-1562 NSSRSEIRLG RSESLKGREE MKRSRKAENV PRSRSDVDMD AAAEAARLHQ ENSTTRP00000013766/1-1548 DXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_03437T0/1-1013 DSSRSEIRLG RSESLKGREE MKRSRKAENV PRSRSDVDMD AAAEAARLHQ BACU003917/1-1530 DSSRSEIRLG RSESLKGREE MKRSRKAENV PRSRSDVDMD AAAEAARLHQ 701 750 ENSP00000357177/1-1562 SASSSTSSLS TRSLENPTPP FTPKMGRRSI ESPSLGFCTD TLLPHLLEDD ENSBTAP00000016407/1-1562 SASSSASSLS TRSLENPTPP FTPKMGRRSI ESPNLGFCTD PLLPNLLEDD ENSTTRP00000013766/1-1548 XXXXXXXXXX XXSLENPTPP FTPKMGRRSI ESPSLGFCTD ALLPNLLEDD bmy_03437T0/1-1013 SASSSASSLS TRSLENPTPP FTPKMGRRSI ESPSLGFCTD ALLPNLLEDD BACU003917/1-1530 SASSSASSLS TRSLENPTPP FTPKMGRRSI ESPSLGFCTD ALLPNLLEDD 751 800 ENSP00000357177/1-1562 LGQLSDLEPE PDAQNWQHTV GKDVVAGLTQ REIDRQEVIN ELFVTEASHL ENSBTAP00000016407/1-1562 LGQLSDLEPE PDAQNWQHTV GKDVVARLSQ REIDRQEVIN ELFVTEASHL ENSTTRP00000013766/1-1548 LGQLSDLEPE PDAQNWQHTV GKDVVAGLSQ REIDRQEVIN ELFVTEASHL bmy_03437T0/1-1013 LGQLSDLEPE PDAQNWQHTV GKDVVAGLSQ REIDRQEVIN ELFVTEASHL BACU003917/1-1530 LGQLSDLEPE PDAQNWQHTV GKDVVAGLSQ REIDRQEVIN ELFVTEASHL 801 850 ENSP00000357177/1-1562 RTLRVLDLIF YQRMKKENLM PREELARLFP NLPELIEIHN SWCEAMKKLR ENSBTAP00000016407/1-1562 RTLRVLDLIF YQRMKKEGLL PREELARLFP NLPELIEIHN SWCEAMRKLR ENSTTRP00000013766/1-1548 RTLRVLDLIF YQRMKKEGLL PREELARLFP NLPELIEIHN SWCEAMRKLR bmy_03437T0/1-1013 RTLRVLDLIF YQRMKKEGLL PREELVRLFP NLPELVEIHN SWCEAMRKLR BACU003917/1-1530 RTLRVLDLIF YQRMKKEGLL PREELVRLFP NLPELVEIHN SWCEAMRKLR 851 900 ENSP00000357177/1-1562 EEGPIIKEIS DLMLARFDGP AREELQQVAA QFCSYQSIAL ELIKTKQRKE ENSBTAP00000016407/1-1562 EEGPIIKEVS DLMLARFDGP AREELQEVAA QFCSYQSIAL ELIKTRQRKE ENSTTRP00000013766/1-1548 EEGPIIKEVS DLMLARFDGP AREELQQVAA QFCSYQSIAL ELIKTRQRKE bmy_03437T0/1-1013 EEGPIIKEVS DLMLARFDGP AREELQQVAA QFCSYQSIAL ELIKTRQRKE BACU003917/1-1530 EEGPIIKEVS DLMLARFDGP AREELQQVAA QFCSYQSIAL ELIKTRQRKE 901 950 ENSP00000357177/1-1562 SRFQLFMQEA ESHPQCRRLQ LRDLIISEMQ RLTKYPLLLE SIIKHTEGGT ENSBTAP00000016407/1-1562 SRFQLFMQEA ESHPQCRRLQ LRDLIISEMQ RLTKYPLLLE NIIKHTEGGT ENSTTRP00000013766/1-1548 SRFQLFMQEA ESHPQCRRLQ LRDLIISEMQ RLTKYPLLLE NIIKHTEGGT bmy_03437T0/1-1013 SRFQLFMQWL LVARHSRAL- ------TDFS GRSPHHLLSA PWV----GGT BACU003917/1-1530 SRFQLFMQEA ESHPQCRRLQ LRDLIISEMQ RLTKYPLLLE NIIKHTEGGT 951 1000 ENSP00000357177/1-1562 SEHEKLCRAR DQCREILKYV NEAVKQTENR HRLEGYQKRL DATALERASN ENSBTAP00000016407/1-1562 SEHEKLCRAR DQCREILKYV NEAVKQTENR HRLEGYQKRL DTTSLERASN ENSTTRP00000013766/1-1548 SEHEKLCRAR DQCREILKYV NEAVKQTENR HRLEGYQKRL DTTSLERASN bmy_03437T0/1-1013 SEHEKLCRAR DQCREILKYV NEAVKQTENQ HRLEGYQKRL DTTSLERASN BACU003917/1-1530 SEHEKLCRAR DQCREILKYV NEAVKQTENQ HRLEGYQKRL DTTSLERASN 1001 1050 ENSP00000357177/1-1562 PLAAEFKSLD LTTRKMIHEG PLTWRISKDK TLDLHVLLLE DLLVLLQKQD ENSBTAP00000016407/1-1562 PLAAEFKSLD LTTRKMIHEG PLTWRISKDK TLDLHVLLLE DLLVLLQKQD ENSTTRP00000013766/1-1548 PLAAEFKSLD LTTRKMIHEG PLTWRISKDK TLDLHVLLLE DLLVLLQKQD bmy_03437T0/1-1013 PLAAEFKR-- --TPHQHHTP P--------- --DLHVLLLE DLLVLLQKQD BACU003917/1-1530 PLAAEFKSLD LTTRKMIHEG PLTWRISKDK TLDLHVLLLE DLLVLLQKQD 1051 1100 ENSP00000357177/1-1562 EKLLLKCHSK TAVGSSDSKQ TFSPVLKLNA VLIRSVATDK RAFFIICTSK ENSBTAP00000016407/1-1562 EKLLLKCHSK TAVGSSDSKQ TFSPVLKLNA VLVRSVATDK RAFFIICTSE ENSTTRP00000013766/1-1548 EKLLLKCHSK TAVGSSDSKQ TFSPVLKLNA VLVRSVATDK RAFFIICTSE bmy_03437T0/1-1013 EKLLLKCHSK TAVGSSDSKQ TFSPVLKLNA VLVRSVATDK RAFFIICTSE BACU003917/1-1530 EKLLLKCHSK TAVGSSDSKQ TFSPVLKLNA VLVRSVATDK RAFFIICTSE 1101 1150 ENSP00000357177/1-1562 LGPPQIYELV ALTSSDKNTW MELLEEAVRN ATRHPGAAPM PVHPPPPGPR ENSBTAP00000016407/1-1562 LGPPQIYELV ALTSSDKNTW MELLEEAVRN ATRLPGAAPT PIHPPPPGPQ ENSTTRP00000013766/1-1548 LGPPQIYELV ALTSSDKNTW MELLEEAVRN ATRHPGAAPK PVHPPPSGPQ bmy_03437T0/1-1013 LGPPQIYELV ALTSSDKNT- ---------- ---------- ---------- BACU003917/1-1530 LGPPQIYELV ALTSSDKNT- ---------- ---------- ---------- 1151 1200 ENSP00000357177/1-1562 EPAQQGPTPS RVELDDSDVF HGEPEPEELP G---GTGSQQ RVQGKHQVLL ENSBTAP00000016407/1-1562 EPADQSPPPS RAGPDDSEVF RGEAEPGAAP G---GMGCQQ RVQGKPLALL ENSTTRP00000013766/1-1548 EPAHQSPTPS REGLDDSEVF RSEPEPETVP G---GTGPQQ RVKGKHPVLL bmy_03437T0/1-1013 ---------- ---------- ---------- ---------- ---------- BACU003917/1-1530 ---------- -VGLDDSEVF RSEPEPETVP GAKAGTGPQQ RVKGKHPVLL 1201 1250 ENSP00000357177/1-1562 EDPEQEGSAE EEELGVLPCP STSLDGENRG IRTRNPIHLA FPGPLFMEGL ENSBTAP00000016407/1-1562 ADAEQEGSVE EEELGALPHS SASLDSKHRG SRTRDPILLP LPGPLFIEGL ENSTTRP00000013766/1-1548 EGPKQEGSIE EEELGTLPHP SASLDGENRG SRTRDPILLP LPGPLFMEGL bmy_03437T0/1-1013 ---------- ---------- ---------- ---------- ---------- BACU003917/1-1530 EGPEPEGSIE EEELGTLPHP SASLDGENRG SRTRDPILLP LPGPLFMEGL 1251 1300 ENSP00000357177/1-1562 ADSALEDVEN LRHLILWSLL PGHTMETQAA QEPEDDLTPT PSVISVTSHP ENSBTAP00000016407/1-1562 ADAALEDVEN LRHLILWSLL PGHPTDPRAA GEPEDDLTPT PSFISITSHP ENSTTRP00000013766/1-1548 ADAALEDVEN LRHLILWSLL PGRPMDPQTS GEPEDDLTPT PSVISITSHP bmy_03437T0/1-1013 ---------- ---------- ---------- ---------- ---------- BACU003917/1-1530 ADAALEDVEN LRHLILWSLL PGHPVDPQAS GEPEDDLTPT PSVISITSHP 1301 1350 ENSP00000357177/1-1562 WDPGSPGQAP PGGEGDNTQL AGLEGERPEQ EDMGLCSLEH LPPRTRNSGI ENSBTAP00000016407/1-1562 WDPGSPGRAP AGTEGDTAPL LGPEWSQPGQ EDTTLRSLEQ LPPRTRNSGI ENSTTRP00000013766/1-1548 WDPGSPGRAP TGGEGDSAPL SGPE--RGQQ EDTALCSLEH LPPRTRNSGI bmy_03437T0/1-1013 ---------- ---------- ---------- ---------- ---------- BACU003917/1-1530 WDPGSPGRAP TGGEGDSARL SGPE--RGQQ EDVAVCSLEH LPPRTRNSGI 1351 1400 ENSP00000357177/1-1562 WESPELDRNL AEDASSTEAA GGYKVVRK-- ---------A EVAGSKVVPA ENSBTAP00000016407/1-1562 WESSELDKSP EEEASSTEGT GSYKVVRK-- ---------A EVAGSKVVPA ENSTTRP00000013766/1-1548 WESPELDRNP EEEASSTEAT GSYKVVRK-- ---------A EVAGSKVVPA bmy_03437T0/1-1013 ---------- ---------- ---------- ---------- ---------- BACU003917/1-1530 WDSPELDRNP EEEASSTEAT GSYKVVRKVS TLPGGGVGAA EVAGSKVVPA 1401 1450 ENSP00000357177/1-1562 LPESGQSEPG PPEVEGGTKA -TGNCFYVSM PSGPPDSSTD HSEAPMSPPQ ENSBTAP00000016407/1-1562 LPESGQAGPE PPEAEGGAKA GTGNCFYVSM PAGPPDSSTD PSGAHTSPSQ ENSTTRP00000013766/1-1548 LPESGQSEPE PPEVEGGAKA -TGNCFYVSM PAGPLDSSTD PSGARVGPSQ bmy_03437T0/1-1013 ---------- ---------- ---------- ---------- ---------- BACU003917/1-1530 LPESGQSEPE PPEVEGGAKA -TGNCFYVSM PAGPLDSSTD PSGARVSPSQ 1451 1500 ENSP00000357177/1-1562 PDSLPAGQTE PQPQLQGGND DPRRPSRSPP SLALRDVGMI FHTIEQLTLK ENSBTAP00000016407/1-1562 PDGLPAWQTE PQPPLQGGHG DQKHPSRSPP SLALRDVGMI FRTIEQLTLK ENSTTRP00000013766/1-1548 PDGLPAWQPA PRPALREGNE DQRRLGRSPP SLALRDMGMI FRTIEQLTVK bmy_03437T0/1-1013 ---------- ---------- ---------- ---------- ---------- BACU003917/1-1530 PDGLPASQTE PPPALREGNG DQRRPGHSPP SLALRDVGVI FRTIEQLTVK 1501 1550 ENSP00000357177/1-1562 LNRLKDMELA HRELLKSLGG ESSGGTTPVG SFHTEAARWT DGSLSPPAKE ENSBTAP00000016407/1-1562 LNRLKDMELA HRELLRSLRS QSSGGTTPVG SFHTEAARWI ESSLSPPAKE ENSTTRP00000013766/1-1548 LNRLKDMELA HKELLRSLGG ESSGGTTPVG GFHTEAARWI DSSLSPPAKE bmy_03437T0/1-1013 ---------- ---------- ---------- ---------- ---------- BACU003917/1-1530 LNRLKDVELA HKELLRSLGG ESSGGTTPVG GFHTEAARWV DSSLSPPAKE 1551 1600 ENSP00000357177/1-1562 PLASDSRNSH ELGPCPEDGS DAPLEDSTAD AAASPGP ENSBTAP00000016407/1-1562 PPASDSTDSR ELGPCPEDGP -TPLEDSTAD TAASPGP ENSTTRP00000013766/1-1548 HLASDSRDSC ELGPCPEDGH NAPLEDGPAD SATSPGL bmy_03437T0/1-1013 ---------- ---------- ---------- ------- BACU003917/1-1530 HLASDSRDSR ELGPCPEDGA NTPLEDGPAD TATPPGL