KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:58:58 2014 Check: 00 .. Name: ENSBTAP00000016383/1-560 Len: 616 Check: 5334 Weight: 1.00 Name: ENSTTRP00000013765/1-558 Len: 616 Check: 3400 Weight: 1.00 Name: bmy_03435T0/1-615 Len: 616 Check: 3157 Weight: 1.00 Name: BACU003918/1-559 Len: 616 Check: 6275 Weight: 1.00 // 1 50 ENSBTAP00000016383/1-560 MSGEASAPPA TSPRAPRPGI QKSSGAVTKK GDRGAKEKPA TVLPPVGEEE ENSTTRP00000013765/1-558 MSGEASAPPV ASPRAPRPGI QKSSGAVTRK GDRGAKEKPT TVLPPVGEEE bmy_03435T0/1-615 MSGEASAPPV ASPRAPRPGV QKSSSAVTRK GDRGAKEKPT TVLPPVGEEE BACU003918/1-559 MSGEASAPPV ASPRAPRPGI QKSSGAVTRK GDRGAKEKPT TVLPPVGEEE 51 100 ENSBTAP00000016383/1-560 PKNPEEYQCT GILEVDFAEL CTRWGYTDFP KVVTRPRPQP TFAPSASTSE ENSTTRP00000013765/1-558 PKNPEVYQ-T GFLEVDFVEL CTRRGYTDFP KVVTRPRPHP TFVPSASTSE bmy_03435T0/1-615 PKNPEEYQGT GVLEVDFAEL CTRWGYTDFP KVVTRPRPHP TFVPSASTSE BACU003918/1-559 PKNPEEYQGT GVLEVDFAEL CTRWGYTDFP KVVTRPRPHP TFVPSASTSE 101 150 ENSBTAP00000016383/1-560 KPTVDDQRLS GSCSLNSLES KYVFFRPTIQ VELEPEDKSV KEIYIR---- ENSTTRP00000013765/1-558 KPTVDEQPLS GSCSFNSLES KYVFFRPTIQ VELEPEDKSV KEIYIR---- bmy_03435T0/1-615 KPTVDEQRLS GSCSLNSLES KYEFFRPTIQ VELEPEDKSV KEIYIRGEVR BACU003918/1-559 KPTVEEQRLS GSCSLNSLES KYEFFRPTIQ VELEPEDKSV KEIYIR---- 151 200 ENSBTAP00000016383/1-560 ---------- ---------- ----GWKVEE RILGIFSKCL PSLSQLQAIN ENSTTRP00000013765/1-558 ---------- ---------- ----GRKVEE KILGIFSKCL PSLSQLHDIN bmy_03435T0/1-615 PRSLSPVHHR TPPGLRRRPP FPSAGWKVEE RILGIFSKCL TSLSQLQAIN BACU003918/1-559 ---------- ---------- ----GWKVEE RILGIFSKCL TSLSQLQAIN 201 250 ENSBTAP00000016383/1-560 LWKVGLTDKT LTTFIALLPL CSSTLRKVSL EGNPLPEQSY HKLMAADSTI ENSTTRP00000013765/1-558 FWKVGLTDKT LTTFIALLPL CSSTLRKVSL EGNPLPEQSY HKLMAVDSTI bmy_03435T0/1-615 LWKVGLTDKT LTTFIALLPL CSSTLRKVSL EGNPLPEQSY HKLMAVDSTI BACU003918/1-559 LWKVGLTDKT LTTFIALLPL CSSTLRKVSL EGNPLPEQSY HKLMAVNSTI 251 300 ENSBTAP00000016383/1-560 AHLSLRNNNI DDHGAQLLGQ ALSTLHSCNR TLVSLNLGFN HIGDEGAGYI ENSTTRP00000013765/1-558 AHLSLRNNNI DDHGAQLLGQ ALSTLHSCNR TLVSLNLGFN HIGDEGAGYI bmy_03435T0/1-615 AHLSLRNNNI DDHGAQLLGQ ALSTLHSCNR TLVSLNLGFN HIGDEGAGYI BACU003918/1-559 AHLSLRNNNI DDHGAQLLGQ ALSTLHSCNR TLVSLNLGFN HIGDEGAGYI 301 350 ENSBTAP00000016383/1-560 AD-------- ---------- ---------- GLRLNRSLLW LSLAHNRIQD ENSTTRP00000013765/1-558 AD-------- ---------- ---------- GLRLNRSLLW LSLAHNRIQD bmy_03435T0/1-615 ADVRARPAGA HARAVAARGQ PAHCPSLPPQ GLRFNRSLLW LSLAHNRIQD BACU003918/1-559 AD-------- ---------- ---------- GLRFNRSLLW LSLAHNRIQD 351 400 ENSBTAP00000016383/1-560 KGALKLAEVL RPFELTHIEV VERRRLLLEK GSQERSRSPS TSRHGDSKTE ENSTTRP00000013765/1-558 KGALKLAEVL RPFELTHTEV VERRRLVLEK GSQERLRSPS TSRHGDSKTE bmy_03435T0/1-615 KGALKLAEVL RPFELTHTEV VERRRLLLEK GLQERSRSPS TSRHGDSKTE BACU003918/1-559 KGALKLAEVL RPFELTHTEV VERRRLLLEK GSQERSRSPS TSRHGDSKTE 401 450 ENSBTAP00000016383/1-560 RDKNQLMGVS SFALVEKDKT QTVKTPKGLG KKKEKSGEVV KKEEKSGPGQ ENSTTRP00000013765/1-558 REKNQLMRVS SFAMVEKDKM QTTKTPKGLG KKKEKSGEVV KKEEKSGSGQ bmy_03435T0/1-615 REKNQLMGVS SFAMVEKDKT QTTKTPKGLG KKKEKSGEVV KKEEKSGSGQ BACU003918/1-559 REKNQLMGVS SFAMVEKDKT QTTKTPKGLG KKKEKSGEVV KKEEKSGSGQ 451 500 ENSBTAP00000016383/1-560 SPTQGTPRKE DSAKAGKGKV TIPEQKLSKG KGAKTGSKEK RSILMESEQL ENSTTRP00000013765/1-558 SPTQGTPKKE DSTKTGKGKV TIPEQKLSKG KGTKTVSKEK RSILPESE-V bmy_03435T0/1-615 LPTQGTPKKE DSTKAGKGKV TIPEQKLSKG KGTKTGSKEK RSILLESE-L BACU003918/1-559 LPTQGTPKKE DSTKAGKGKV TIPEQKLSKG KGTKTGSKEK RSILLESE-L 501 550 ENSBTAP00000016383/1-560 VGEATEMVNP LLEPVEHRDG KVFMPGNKVL LHLNLLRNRI TEVGLEAFLT ENSTTRP00000013765/1-558 VGEATEMVNP LLEPVEHRDG KVFMPGNRVL LHLNLLRNRI TEVGLEAFLT bmy_03435T0/1-615 VGETTEMVNP LLEPVEHRDG KVFMPGNKVL LHLNLLRNRI TEVGLEAFLT BACU003918/1-559 VGETSEMVNP LLEPMEHRDG KVFMPGNKVL LHLNLLRNRI TEVGLEAFLT 551 600 ENSBTAP00000016383/1-560 VVQYQAQFAK SKSASKGPVG LLWLSLAKNC FSPQCPAYAM IQELMLPRDP ENSTTRP00000013765/1-558 AVQYQAQFSE SKSASRGPVG LLRLSLAKNC FSPQCPAYTT IQELMLPRDP bmy_03435T0/1-615 AVQYQAQFSK SKSASKGPVG LLWLSLAKNC FSPQCPAYTT IQELMLPRDP BACU003918/1-559 TVQYQAQFSK SKSASKGPVG LLWLSLAKNC FSPQCPAYTT IQELMLPRDP 601 650 ENSBTAP00000016383/1-560 ISKCRHKEEE PVASST ENSTTRP00000013765/1-558 VSKAKHKEEA AVASST bmy_03435T0/1-615 VSKAKHKEAA AVASST BACU003918/1-559 VSKVKHKEAA AVASST