KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:58:50 2014 Check: 00 .. Name: ENSP00000303252/1-1209 Len: 1212 Check: 7017 Weight: 1.00 Name: ENSBTAP00000016310/1-1122 Len: 1212 Check: 2361 Weight: 1.00 Name: ENSTTRP00000008240/1-1207 Len: 1212 Check: 9556 Weight: 1.00 Name: bmy_11244T0/1-1162 Len: 1212 Check: 1098 Weight: 1.00 Name: BACU014045/1-534 Len: 1212 Check: 85 Weight: 1.00 // 1 50 ENSP00000303252/1-1209 MECYYIVISS THLSNGHFRN IKGVFRGPLS KNGNKTLDYA EKENTIAKAL ENSBTAP00000016310/1-1122 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008240/1-1207 MECYYIVISS THLSNGHFRN IKGVFRGPLS KNGNKTLDYA EKENSIAKAL bmy_11244T0/1-1162 ---------- ---------M LAAASRGVVG LEPE------ ---------- BACU014045/1-534 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000303252/1-1209 EDLKANFYCE LCDKQYYKHQ EFDNHINSYD HAHKQRLKEL KQREFARNVA ENSBTAP00000016310/1-1122 ---------- ---------- ---------- -----RLKEL KQREFARNVA ENSTTRP00000008240/1-1207 EDLKANFYCE LCDKQYYKHQ EFDNHINSYD HAHKQRLKEL KQREFARNVA bmy_11244T0/1-1162 ---------- --GRQLEPST GQGFSQGTLV AAALKRLKEL KQREFARNVA BACU014045/1-534 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000303252/1-1209 SKSRKDERKQ EKALQRLHKL AELRKETVCA PGSGPMFKST TVTVRENCNE ENSBTAP00000016310/1-1122 SKSRKDERKQ EKALQRLHKL AELRKETVCA PGSGPMFKST TVTVRENCNE ENSTTRP00000008240/1-1207 SKSRKDERKQ EKALQRLHKL AELRKETVCA PGSGPMFKST TVTVRENCNE bmy_11244T0/1-1162 SKSRKDERKQ EKALQRLHKL AELRKETVCA PGSGPMFKST TVTVRENCNE BACU014045/1-534 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000303252/1-1209 ISQRVVVDSV NNQQDFKYTL IHSEENTKDA TTVAEDPESA NNYTAKNNQV ENSBTAP00000016310/1-1122 ISQRAVVDSV NNQEDFKCTL ILIQEKAKDV TTLAADPEST KSYMAKNNQL ENSTTRP00000008240/1-1207 ISQRVVVDSV NNQEDFKCTL IHSQENAKGV TTVATDPESV KSYTAKKSQL bmy_11244T0/1-1162 ISQRVVVDSV NNQEDFKCTL IHSQENAKGV TTVATDPESV KSYTAKKSQL BACU014045/1-534 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000303252/1-1209 GDQAQGIHRH KIGFSFAFPK KASVKLESSA AAFSEYSDDA SVGKGFSRKS ENSBTAP00000016310/1-1122 EDQAQGIHRH K-GFSFAFPK KASVKLESSA AAFSEYNDDA SAEKGFSRKS ENSTTRP00000008240/1-1207 ADQAQGIHRH KIGFSFAFPK KASVKLESSA AAFSEYNDDA SVEKGFSRKS bmy_11244T0/1-1162 GDQAQGIHRH KIGFSFAFPK KASVKLESSA AAFSECNDDA SVEKGFSRKS BACU014045/1-534 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000303252/1-1209 RFVPSACHLQ QSSPTDVLLS SEEKTNSFHP PEAMCRDKET VQTQEIKEVS ENSBTAP00000016310/1-1122 RFVPGACHLQ LSSPTDVLLN SVEKANSFHP PEGMCTDKET TQTQEMKKVS ENSTTRP00000008240/1-1207 RFVPSACHLQ LSSPTDVLLS SEEKANSLHP PEGRCTDKET AQTREMKEVS bmy_11244T0/1-1162 RFVPSACHLQ LSSPTDVLLS YEEKANSFHP PEGRCTDKET AQTQEMKEVS BACU014045/1-534 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000303252/1-1209 SEKDALLLPS FCKFQLQLSS DADNCQNSVP LADQIPLESV VINEDIPVSG ENSBTAP00000016310/1-1122 SEKDPLLLPP FCQFQLPSSS DADNCQISVP SADQISPEDI LINEDTPING ENSTTRP00000008240/1-1207 SEKDTLLLPP FCQFQLPSSS DADNCQNSVP LADQIPLEDV IINEDIPVSG bmy_11244T0/1-1162 SEKDTLLLPP FCQFQLPSSS DADNCQNSVP LADQIPLEDV IINEDVPVSG BACU014045/1-534 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000303252/1-1209 NSFELLGNKS TVLDMSNDCI SVQATTEENV KHNEASTTEV ENKN-GPETL ENSBTAP00000016310/1-1122 NTSELLGNKS IVLDMADDNM SLQTTTKETV KGNVTSMIEV ENKNHGLDVL ENSTTRP00000008240/1-1207 NTSDLLGNKS IVLDMANDCL SLQATIEERV KDNDAPTTEA EYKNHSPDML bmy_11244T0/1-1162 NTSELLGNKS IVLDMADDCL SLQATIEESV KDNDASTVEA EYKNHSPDML BACU014045/1-534 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000303252/1-1209 APSNTEEVNI TIHKKTNFCK RQCEPFVPVL NKHRSTVLQW PSEMLVYTTT ENSBTAP00000016310/1-1122 TPVNSEEDNI TLHTKEDLYK RPCEPFIPVL NKDGSTVLQW PSEMLTYTTT ENSTTRP00000008240/1-1207 APLNSEEDNI TLHKKMDLYK RPCEPFVPVL NKDGSTVLQW PSEMLIYTTT bmy_11244T0/1-1162 APLNSEEDNI TLHKKMDLYK RPCEPFVPVL NKDGSTVLQW PSEMLIYTTT BACU014045/1-534 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000303252/1-1209 KPSISYSCNP LCFDFKSTKV NNNLDKNKPD LKDLCSQQKQ EDICMGPLSD ENSBTAP00000016310/1-1122 QPSISYSCNP LCFDFKSTKL NNKLDKNKLP LSDLSSQQKG EEIYKNPVLD ENSTTRP00000008240/1-1207 QPSVSYSCNP LCFDFKSTKL NNNLDKNKLP LNDLSSHQKG EDICKRPVLD bmy_11244T0/1-1162 QPSISYSCNP LCFDFKSTKL NNNLDKNKLP LNDLSSHQKG EDICKRPVLD BACU014045/1-534 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000303252/1-1209 YKDVSTEGLT DYEIGSSKNK CSQVTPLLAD DILSSSCDSG KNENTGQRYK ENSBTAP00000016310/1-1122 CKDTSMAGLT DYEIGGSRSG HTQVTSHLTD DTVSNSCDSG KNETMGQRCK ENSTTRP00000008240/1-1207 CKDASVTGLT DHEIGGSRNG YTQVTPLFAD DTLSNSCDSG KNESMSQRYK bmy_11244T0/1-1162 CKDTSVTGLT DHEIGGSRNG YTQVTPLLAD DTFSNSCDSG KNESMSQRYK BACU014045/1-534 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000303252/1-1209 NISCKIRETE KYNFTKSQIK QDTLDEKYNK IRLKETHEYW FHKSRRKKKR ENSBTAP00000016310/1-1122 NISCRIRKTK KYTFTKNQIK PDAIDGKYNK IRLKNTHERW FHKSRRKKKR ENSTTRP00000008240/1-1207 NISCRIRKTK KYTFTKNQIK QDVLGGKYNK IRLKDTNELW FHKSGRKKKR bmy_11244T0/1-1162 NISCRVRKTK EYTFTKNQIK QDALGGKYNK IRLKDTHEPW FHKSRRKKKR BACU014045/1-534 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000303252/1-1209 KKLCQHHHME KTKESETRCK MEAENSYTEN AGKYLLEPIS EKQYLAAEQL ENSBTAP00000016310/1-1122 -KLCHHNYGE KTKESETRFK METENSYTDT TRKNLLEIIS EKQYLAAEQL ENSTTRP00000008240/1-1207 RKLCHHNYGK KTKESETYFK MERENSYTDK TRKNLLETIS EKQYLATEQL bmy_11244T0/1-1162 RKLCHHNYGK KTKESATYCK MERENSYTDK TRKNLLETIS EKQYLATEQL BACU014045/1-534 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000303252/1-1209 LDSHQLLDKR PKSESISLSD NEEMCKTWNT EY--NTYDTI SSKNHCKKNT ENSBTAP00000016310/1-1122 LDSQQLPDKR PKSTSIYLSE NEETCKTWNT EY--NNNTFI SSKNYCKNSS ENSTTRP00000008240/1-1207 LDSQQLPDKR PKSASIYLSE NEELCKTRNT EY--NKN-II SSKNHCKKSS bmy_11244T0/1-1162 LDSQQLPDKR PKSASIYLSE NEEMCKTQNT EY-NNKNIII SSKNHCKKSS BACU014045/1-534 ---------- ---------- ---MCKTQNT EYNNNKNIII SSKNHCKKSS 701 750 ENSP00000303252/1-1209 ILLNGQSNAT MIHSGKHNLT YSRTYCCWKT KMSSCSQDHR SLVLQNDMKH ENSBTAP00000016310/1-1122 VVLNGQSNST MIHSAKHNLT YSRTYCSWKA KMSSCGHDHR CLVLQNEMKC ENSTTRP00000008240/1-1207 VVLNGQSNST MIHSVKHNLT YSRTYCSWKA KTSSCSQDHR CLVLQNEMKC bmy_11244T0/1-1162 VVLNGQSNST MIHSVKHNLT YSRTYCSWKA KTSSCSQDHS CLVLQNEMKC BACU014045/1-534 VVLNGQSNST MIHSVKHNLT YSRTYCSWKA KTSSCSQDHS CLVLQNEMKC 751 800 ENSP00000303252/1-1209 MSQNQAVKRG YNSVMNESER FYRKRRQHSH SYSSDESLNR QNHLPEEFLR ENSBTAP00000016310/1-1122 MSQSQAVKRG YNSLINESER CHRKRRQHSY SYSSDESLNR QNYLPEEFLT ENSTTRP00000008240/1-1207 MSQNQAVKRG YNSLINGSER CHQKRRQHSY SYSSDESLDQ QNYLPEEFLR bmy_11244T0/1-1162 MSQNQAVKRG YNSLINESER CHQKRRQHSY SYSSDESLDQ QNYLPEEFLR BACU014045/1-534 MSQNQAVKRG YNSLINESER CHQKRRQHSY SYSSDESLDQ QNYLPEEFLR 801 850 ENSP00000303252/1-1209 PPSTSVAPCK PKKKRRRKRG RFHPGFETLE LKENTDYPVK DNSSLNPLDR ENSBTAP00000016310/1-1122 SRRAS-APCK PKRKQRRKRN RFHMGFEALE LKEKTDYPKK GNSSLHHQDK ENSTTRP00000008240/1-1207 PPHAS-APCK PKRKWRRK-S RFHTSFEALE LKEKTDYPRK GNSFLHHPDE bmy_11244T0/1-1162 PPHAS-APCK PKRKQRRK-S RFHTSFEALE LKEKTDYPRK GNSSLHHQDE BACU014045/1-534 PPHTS-APCK PKRKQR---- RFHTSFEALE LKEKTDYPRK GNSSLHHQDE 851 900 ENSP00000303252/1-1209 LISEDKKEKM KPQEVAKIER NSEQTNQLRN KLSFHPNNLL PSETNGETEH ENSBTAP00000016310/1-1122 IVSEEGKEEV KPQETADVKR NSEQLDQVEN KLAVPTSSPL PSEANDETQQ ENSTTRP00000008240/1-1207 IISEDRKEEI KPQETANVKR NSEQMDQVEN KLSLPANSPL PSETNGETEQ bmy_11244T0/1-1162 IISEDRKEEI KPQETANVKR NSEQMDQVEN KLALPASSPL PSETNGETEQ BACU014045/1-534 IISEDRKEEI KPQETANIKR NSEQMDQVEN KLALPASSPL PSETNGETEQ 901 950 ENSP00000303252/1-1209 LEMETTSGEL SDVSNDPTTS VCVASAPTKE AIDNTLLEHK ERSENINLNE ENSBTAP00000016310/1-1122 VVMETTSGEP SEISSEPTTS AYTVSAPAKG EIDSTSLEHK ERSEDTNVNE ENSTTRP00000008240/1-1207 VVMETTSGEL SEISNEPTTS VYIASAPTKE EMDSTLLEHK ERSENTNINE bmy_11244T0/1-1162 VVMETTSGEL SEISNEPTTS VYIASAPTKE EMDNILLEHK ERSENTNINE BACU014045/1-534 VVMETTSGEL SEISNEPTTS VYRASAPTKE EMDSTLLEHK ERSENTNINE 951 1000 ENSP00000303252/1-1209 KQIPFQVPNI ERNFRQSQPK SYLCHYELAE ALPQGKMNET PTEWLRYNSG ENSBTAP00000016310/1-1122 KQIPFKVPNS ERNFRQSQPK SFLCHYELAE ALPQGKMNEA STEWLCFNSG ENSTTRP00000008240/1-1207 KQIPFKMPSI ERNFRQSQPK SYLCHYELAE ALPQGKMNEA STEWLCFNSG bmy_11244T0/1-1162 KQIPFKVPSI ERNFRQSQPK SYLCHYELAE ALPQGKMNEA STEWLCFNSG BACU014045/1-534 KQIPFKVPSI ERNFRQSQPK SYLCRYELAE ALPQGKMNEA STEWLCFNSG 1001 1050 ENSP00000303252/1-1209 ILNTQPPLPF KEAHVSGHTF VTAEQILAPL ALPEQALLIP LENHDKFKNV ENSBTAP00000016310/1-1122 ILNAQPPLPF KEAHVSGHTF VTTEQILAPL ALPEQALLIP IENHDKFKNL ENSTTRP00000008240/1-1207 ILNAQPPLPF KEAHVSGHTF VTTEQILAPL ALPEQALLIP IENHDKFKNL bmy_11244T0/1-1162 ILNAQPPLPF KEAHVSGHTF VTTEQILAPL ALPEQALLIP IENHDKFKNL BACU014045/1-534 ILNAQPPLPF KEAHVSGHTF VTTEQILAPL ALPEQALLIP IENHDKFKNL 1051 1100 ENSP00000303252/1-1209 PCEVYQHILQ PNMLANKVKF TFPPAALPPP STPLQPLPLQ QSLCSTSVTT ENSBTAP00000016310/1-1122 PCEVYQHILP PNMLANKVKF TFPPAALAPP STPLQPLPLQ QPLRSTSVTT ENSTTRP00000008240/1-1207 PCEVYQHIIP PSMLANKVKF TFPPAALPPP STPLQPLPLQ QPLCSTSVTA bmy_11244T0/1-1162 PCEVYQHIIP PSMLANKVKF TFPPAALPPP STPLQPLPLQ QPLCSTSVTA BACU014045/1-534 PCEVYQHIIP PSMLANKVKF TFPPAALPPP STPLQPLPLQ QPLCSTSVTA 1101 1150 ENSP00000303252/1-1209 IHHTVLQQHA AAAAAAAAAA AAGTFKVLQP HQQFLSQIPA LTRTSLPQLS ENSBTAP00000016310/1-1122 IHHTVLQQHA AAAAAAAAAA AAGTFKVLQP HQQFLSHVPA LTRTSLPQIS ENSTTRP00000008240/1-1207 IHHTVLQQHA AAAAAAAAAA AAGTFKVLQP HQQFLSQVPA LTRTSLPQIS bmy_11244T0/1-1162 IHHTVLQQHA AAAAAAAAAA AAGTFKVLQP HQQFLSQVPA LNRTSLPQIS BACU014045/1-534 IHHTVLQQHA AAAGAAAAAA AAGTFKVLQP HQQFLSQVPA LNRTALPQIS 1151 1200 ENSP00000303252/1-1209 VGPVGPRLCP GNQPTFVAPP QMPIIPASVL HPSHLAFPSL PHALFPSLLS ENSBTAP00000016310/1-1122 VGPVGPRLCP GSQPTFVAPP QVPIIPASVL HPSHLAFPPL PHALFPSLLS ENSTTRP00000008240/1-1207 VGQVGPRLCP GNQPTFVASP QMPIIPASVL HPSHLAFSPL PHALFPSLLS bmy_11244T0/1-1162 VGPVGPRLCP GNQPTFVTPP QMPIIPASVL HPSHLAFSPL PHALFPSLLS BACU014045/1-534 VGPVGPRLCP GNQPTFVTPP QMPIIPASVL HPSHLAFSPL PHALFPSLLS 1201 1250 ENSP00000303252/1-1209 PHPTVIPLQP LF ENSBTAP00000016310/1-1122 PHPTVIPLQP LF ENSTTRP00000008240/1-1207 PHPSVIPLQP LF bmy_11244T0/1-1162 PHPSVIPLQP LF BACU014045/1-534 PHPSVIPLQP LF