KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:58:30 2014 Check: 00 .. Name: ENSTTRP00000004128/1-410 Len: 853 Check: 810 Weight: 1.00 Name: ENSP00000376807/1-411 Len: 853 Check: 5545 Weight: 1.00 Name: BACU004272/1-732 Len: 853 Check: 4868 Weight: 1.00 Name: bmy_14298T0/1-510 Len: 853 Check: 3248 Weight: 1.00 Name: ENSBTAP00000016201/1-410 Len: 853 Check: 3924 Weight: 1.00 // 1 50 ENSTTRP00000004128/1-410 ---------- ---------- ---------- ---------- ---------- ENSP00000376807/1-411 ---------- ---------- ---------- ---------- ---------- BACU004272/1-732 MVLPAEEGCL QVDRTEVVRS SLHLVFSKVF TLEYYFEEVQ KLCFEVYDTH bmy_14298T0/1-510 --MSVKVGGL DSSRACCVRE ---------- ---------- ---------- ENSBTAP00000016201/1-410 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000004128/1-410 ---------- ---------- ---------- ---------- ---------- ENSP00000376807/1-411 ---------- ---------- ---------- ---------- ---------- BACU004272/1-732 GPSSLSYQDD DLLGGMEYTL GQTTLRAAPG PAFHQPRPLQ APAPSSPRPG bmy_14298T0/1-510 -------RKD PQQAGSACFW GREAGRRWPL REQDGGQDRR TGAAGERVPG ENSBTAP00000016201/1-410 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000004128/1-410 ---------- ---------- ---------- ---------- ---------- ENSP00000376807/1-411 ---------- ---------- ---------- ---------- ---------- BACU004272/1-732 RPDTCPRLDC SRAGKGGVRP LLPSLEPRRS PSARVIAGGI SGNNGHVELS bmy_14298T0/1-510 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016201/1-410 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000004128/1-410 ---------- MWAS------ ---------- ---------- WWF------- ENSP00000376807/1-411 ---------- MWSG------ ---------- ---------- WWL------- BACU004272/1-732 LRARKLDDKD LFSEPDPFLE LYRIHDDQRE LLAYRTECLV WDYDSRGKHD bmy_14298T0/1-510 -------ERG MWTS------ ---------- ---------- WWF------- ENSBTAP00000016201/1-410 ---------- MWTG------ ---------- ---------- WWL------- 201 250 ENSTTRP00000004128/1-410 ---------- ---------- --WPLVAV-- ---------- ---------- ENSP00000376807/1-411 ---------- ---------- --WPLVAV-- ---------- ---------- BACU004272/1-732 FTGEFSTTFA EMQNAFGEDQ AQWDYVSLKY TQRKHSSKNS GVVILADLKV bmy_14298T0/1-510 ---------- ---------- --WPLVAV-- ---------- ---------- ENSBTAP00000016201/1-410 ---------- ---------- --WPLVAV-- ---------- ---------- 251 300 ENSTTRP00000004128/1-410 -----CTAD- ----QFR--- ---------- ---------- ---------- ENSP00000376807/1-411 -----CTAD- ----FFR--- ---------- ---------- ---------- BACU004272/1-732 GLGPACSPSP PQVYSFRDYI VGGCQIHFTV AVDFTASTGD PRNSCSLHYI bmy_14298T0/1-510 -----CTAD- ----QFR--- ---------- ---------- ---------- ENSBTAP00000016201/1-410 -----CTAD- ----QFR--- ---------- ---------- ---------- 301 350 ENSTTRP00000004128/1-410 ---------- ---------- -----NTAER IMQGT----- ---------- ENSP00000376807/1-411 ---------- ---------- -----DEAER IMRDS----- ---------- BACU004272/1-732 NPFQPHEYQY YILLILTDGV VANTADTREA IMRASHLPVS IIVGMGNADF bmy_14298T0/1-510 ---------- ---------- -----DTAVR IMQGT----- ---------- ENSBTAP00000016201/1-410 ---------- ---------- -----DNAVR LMQST----- ---------- 351 400 ENSTTRP00000004128/1-410 ---------- ---------- ---------- ---------- ----PVIDG- ENSP00000376807/1-411 ---------- ---------- ---------- ---------- ----PVIDG- BACU004272/1-732 TNMQALDGDN GVPRSPRGEP ALRDVLQFVP FRELKSAAVA VLVAPELEGD bmy_14298T0/1-510 ---------- ---------- ---------- ---------- ----PVIDG- ENSBTAP00000016201/1-410 ---------- ---------- ---------- ---------- ----PVIDG- 401 450 ENSTTRP00000004128/1-410 ---------- ---------- ---------- ---------- -HNDLPWQLL ENSP00000376807/1-411 ---------- ---------- ---------- ---------- -HNDLPWQLL BACU004272/1-732 IATVSCPAEK RLGLGSMRGI GSLLQRPLPF APILEALLSG RHNDLPWQLL bmy_14298T0/1-510 ---------- ---------- ---------- ---------- -HNDLPWQLL ENSBTAP00000016201/1-410 ---------- ---------- ---------- ---------- -HNDLPWQLL 451 500 ENSTTRP00000004128/1-410 KLFNNQLQDP RANLTSLAHT HTNIPKLRAG FVGAQXXXXX XXXXXXXXXX ENSP00000376807/1-411 DMFNNRLQDE RANLTTLAGT HTNIPKLRAG FVGGQFWSVY TPCDTQNKDA BACU004272/1-732 KLFNNQLQDP RANLTSLAHT HTNIPKLKAG FVGAQFWSAY TPCDTQNKDA bmy_14298T0/1-510 KLFNNQLQDP RANLTSLAHT HTNIPKLKAG FVGAQFWSAY TPCDTQNKDA ENSBTAP00000016201/1-410 KRFNNQLQDP RANLTSLNGT HTNIPKLKAG FVGAQFWSAY TPCDTQNKDS 501 550 ENSTTRP00000004128/1-410 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000376807/1-411 VRRTLEQMDV VHRMCRMYPE TFLYVTSSAG IRQAFREGKV ASLIGVEGGH BACU004272/1-732 VKRTLEQIDV IHRMCQLYPE TFLCVTDSTG IRQAFREGQV ASLVGVEGGH bmy_14298T0/1-510 VKRTLEQIDV IHRMCQLYPE TFLCVTDSTG IRQAFREGKV ASLVGVEGGH ENSBTAP00000016201/1-410 VKRTLEQIDV IQRMCQLYPE TFLCVTDSAG IQQAFQEGKV ASLVGVEGGH 551 600 ENSTTRP00000004128/1-410 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000376807/1-411 SIDSSLGVLR ALYQLGMRYL TLTHSCNTPW ADNWLVDTGD SEPQSQGLSP BACU004272/1-732 SIDSSLGVLR ALYHLGMRYL TLTHSCNTPW ADNWLVDTGE DKARSQGLSL bmy_14298T0/1-510 SIDSSLGVLR ALYHLGMRYL TLTHTCNTPW ADNWLVDMGE DKARSQGLSL ENSBTAP00000016201/1-410 SIDSSLGVLR ALYHLGMRYL TLTHSCNTPW ADNWLVDTGE DEAQSQGLSS 601 650 ENSTTRP00000004128/1-410 XXXXXXXXXX XXXXXXXXXX XXXXXMKAVL QLSKAPVVFS HSSAYSVCQH ENSP00000376807/1-411 FGQRVVKELN RLGVLIDLAH VSVATMKATL QLSRAPVIFS HSSAYSVCAS BACU004272/1-732 FGQ------- ---------- -------AVL QLPKPPVVFS HSSAYSVCQH bmy_14298T0/1-510 FGQSVVKEMN RLGVIIDLAH TSTATMRAVL QLSKAPVVFS HSSAYSVCQH ENSBTAP00000016201/1-410 FGQSVVKEMN RLGVIIDLAH VSVATMEAAL QLSKAPVIFS HSSAYSVCRH 651 700 ENSTTRP00000004128/1-410 RRNVPDDVLQ LVKETGSLVM VNFYSDYVSC RTEANLSQVA DHLDHIKKVA ENSP00000376807/1-411 RRNVPDDVLR LVKQTDSLVM VNFYNNYISC TNKANLSQVA DHLDHIKEVA BACU004272/1-732 RRNVPDDVLQ LV-------- ---------- ---------- ---------- bmy_14298T0/1-510 RRNVPDDVLR LVKQTGSLVM VNFYNDYVSC KAEANLSQVA DHLDHIKKVA ENSBTAP00000016201/1-410 RRNVPDHVLQ LVKQTGSLVM VNFYNDYVSC KAEANLSQVA DHLDYIKKVA 701 750 ENSTTRP00000004128/1-410 GAGAVGLGGD YDGVSRLPSG LEDVSKYPDL AAELLRRQWT EAEVKGVLAD ENSP00000376807/1-411 GARAVGFGGD FDGVPRVPEG LEDVSKYPDL IAELLRRNWT EAEVKGALAD BACU004272/1-732 ---------- ---------- --DVSKYPDL AAELLRRQWT EAEVKGALAN bmy_14298T0/1-510 GAGAVGLGGD YDGVSRLPSG LKDVSKYPDL TAELLRRQWT EAEVKGALAN ENSBTAP00000016201/1-410 GAGAVGFGGD YDGVSRLPSG LEDVSKYPDL VAELLRRQWT EEEVRGALAE 751 800 ENSTTRP00000004128/1-410 NLLRVFEAVE QARSHTQAPG EEPIPL--GQ LEASCRTSYG -----Y-SGA ENSP00000376807/1-411 NLLRVFEAVE QASNLTQAPE EEPIPL--DQ LGGSCRTHYG -----YSSGA BACU004272/1-732 NLLRVFEAVE QASSHTQPPG EEPIPL--DQ LEASCRTSNG -----Y-SGA bmy_14298T0/1-510 NLLRVFEAVE QSHAASR-RG AHPIGPTGGL LQDQLRLLRG PQPPPPAGGP ENSBTAP00000016201/1-410 NLLRVFKAVE QASDHKQAPG EEPIPL--GQ LEASCRTNYG -----Y-SGA 801 850 ENSTTRP00000004128/1-410 PSLHLQPGAL -LASLALLVL CQCRL----- ---------- ---------- ENSP00000376807/1-411 SSLHRHWGLL -LASLAPLVL CLSLL----- ---------- ---------- BACU004272/1-732 PSLHLQPGAL -LASLALLVL CLCPL----- ---------- ---------- bmy_14298T0/1-510 AGLPRAPRPL PVSPLTPWQL ERQRLPVRSD WPVLGRHLRS PGQRKTQAQR ENSBTAP00000016201/1-410 PSLHLQPGTL -LASLVTLLL SLCLL----- ---------- ---------- 851 900 ENSTTRP00000004128/1-410 --- ENSP00000376807/1-411 --- BACU004272/1-732 --- bmy_14298T0/1-510 DPQ ENSBTAP00000016201/1-410 ---