KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:58:26 2014 Check: 00 .. Name: bmy_14299T0/1-331 Len: 646 Check: 1343 Weight: 1.00 Name: ENSTTRP00000004121/1-372 Len: 646 Check: 3888 Weight: 1.00 Name: ENSP00000268720/1-633 Len: 646 Check: 5545 Weight: 1.00 Name: ENSBTAP00000016173/1-634 Len: 646 Check: 4214 Weight: 1.00 // 1 50 bmy_14299T0/1-331 ---------- ---------- -------AAC RW-------- ---------- ENSTTRP00000004121/1-372 ---------- ---------- ---------- ---------- ---------- ENSP00000268720/1-633 MSAGSERGAA ATPGGLPAPC ASKVELRLSC RHLLDRDPLT KSDPSVALLQ ENSBTAP00000016173/1-634 MSAGSERRAA AAPGVVPAPC ASKVELRLSC RHLLDRDPLT KSDPSVVLLL 51 100 bmy_14299T0/1-331 -TEPRW---S GAAYIRSSPR SSHWST---- -ALRRCRSCA LRSTTPMGPA ENSTTRP00000004121/1-372 --------VD RTEVVRSGLH PAFSKVFTLD -YFEEVQKLC FEVHDTHGPS ENSP00000268720/1-633 QAQGQWVQVG RTEVVRSSLH PVFSKVFTVD YYFEEVQRLR FEVYDTHGPS ENSBTAP00000016173/1-634 QSQGQWVQVD RTEVVRSSLH PVFSKVFTLD YYFEEVQKLR FEVYDTHGPS 101 150 bmy_14299T0/1-331 ASATRMTTSW GAWSTPWGR- --------W- -------APV PLGGRGRRA- ENSTTRP00000004121/1-372 SLSCQDDD-L GGMECTSGQ- --------W- ---------E GLGGR----- ENSP00000268720/1-633 GFSCQEDDFL GGMECTLGQ- ----PAQKWL LQVVMRVSVD VLGPAGHCAK ENSBTAP00000016173/1-634 SLSCQEDDFL GGMECTLGQL ASSLPQHKGA LPLPVSMAVT GLRDPASSSK 151 200 bmy_14299T0/1-331 ---------- ---------- ---------- ---------A WTPQ------ ENSTTRP00000004121/1-372 ---------- ---------- ---EVAELRA ---------W W--REGH--- ENSP00000268720/1-633 HFLCCTES-- -SHLARTGPS FLLRYDDLCL PWATAGAVRW WTCRGGHT-- ENSBTAP00000016173/1-634 NTPCVTHSIL VSTLRETAGS SLCQCANMHA PTGAGPWTRV WTRMSGYTRL 201 250 bmy_14299T0/1-331 ---LILGQKK VTRALLLKFS RNAGKSPITV IAGDISGNNG HVELSLRARK ENSTTRP00000004121/1-372 -GWPIVAQKK VTPALLLKVS RNAGKSPSTV IARDISGNKG HAEFSLRAMK ENSP00000268720/1-633 QGWQIVAQKK VTRPLLLKFG RNAGKSTITV IAEDISGNNG YVELSFRARK ENSBTAP00000016173/1-634 QGRPIVAQKK VTRALLLKFG RNAGKSTITV LAEDISGNNG YVELSFRARK 251 300 bmy_14299T0/1-331 LDDEDLFSKP DPFLELYRIN DDESELLAYR TE-------- ---------- ENSTTRP00000004121/1-372 LDDKGLFSKP DPLLELHRIN DDQSKQLVYR TEVVKNDLSP TWQPFKVSLS ENSP00000268720/1-633 LDDKDLFSKS DPFLELYRVN DDQGLQLVYR TEVVKNNLNP VWEAFKV--- ENSBTAP00000016173/1-634 LDDKDLFSKS DPFLELYRIN DDQSEQLVYR TEVVKNDLSP TWQPFKV--- 301 350 bmy_14299T0/1-331 ---------- -----CLVWD YDSRGNHDFT GEFSTTFAEM QNAFREDQAQ ENSTTRP00000004121/1-372 SLSSLCSCEE ALPLKGLVWG YDSRGKHDFI AEFSTTLVEM QNAFWEDQAQ ENSP00000268720/1-633 SLSSLCSCEE TRPLKCLVWD YDSRGKHDFI GEFSTTFEEM QKAFEEGQAQ ENSBTAP00000016173/1-634 SLSSLCSCEE SRPLKGLVWD YDSRGKHDFI GEFSTTFEEM QKAFGEDQAQ 351 400 bmy_14299T0/1-331 WDYVSLKYTQ KKRSSKNSGV VILADLK--- ---------- ---------- ENSTTRP00000004121/1-372 WDCVNLKYMQ EKRSPKNSGV VILADLK--- ---------- ---------- ENSP00000268720/1-633 WDCVNPKYKQ KRRSYKNSGV VVLADLKFHR VYSFLDYIMG GCQIHFTVAI ENSBTAP00000016173/1-634 WDCVNSKYKQ KKRNYKNSGV VILADLKLYR VYSFLDYVMG GCQIHFTVAI 401 450 bmy_14299T0/1-331 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004121/1-372 ---------- ---------- ---------- ---------- ---------- ENSP00000268720/1-633 DFTASNGDPR NSCSLHYINP YQPNEYLKAL VSVGEICQDY DSDKRFSALG ENSBTAP00000016173/1-634 DFTASNGDPR NSCSLHYINP FQPNEYLQAL VAVGEICQDY DSDKRLSALG 451 500 bmy_14299T0/1-331 ---------- VSHDFAINFN PEDNECE--- ---------- ---------- ENSTTRP00000004121/1-372 ---------- ---------- ---------- ---------- ---------- ENSP00000268720/1-633 FGARIPPKYE VSHDFAINFN PEDDECEGIQ GVVEAYQNCL PRVQLYGPTN ENSBTAP00000016173/1-634 FGARIPPKYE VSHDFAINFN PEDDECEGIQ GVVEAYQNCL PRVQLYGPTN 501 550 bmy_14299T0/1-331 ---------- ---------- ---------- -DGVVTNMAD TREAIMRASH ENSTTRP00000004121/1-372 ---------- ---------- --QYYMLLIL TNGVATNMAD TREAIMRASH ENSP00000268720/1-633 VAPIISKVAR VAAAEESTGK ASQYYILLIL TDGVVTDMAD TREAIVRASR ENSBTAP00000016173/1-634 VAPIISKVAR TAAAEERTRE ASQYYILLIL TDGVVTDMAD TREAIVRASH 551 600 bmy_14299T0/1-331 LPVSIIV-GM GNADFTNMQV LDGDNGVLRS PRGEPALRDI LQFVPFQELK ENSTTRP00000004121/1-372 LPVSIIV-GV GNTDFTDMQV LDGDSGVLCS PRGEPALH-I LKFVPFWELK ENSP00000268720/1-633 LPMSIIIVGV GNADFTDMQV LDGDDGVLRS PRGEPALRDI VQFVPFRELK ENSBTAP00000016173/1-634 LPMSIIIVGV GNADFTDMQV LDGDDGVLRS PRGEPALRDI VQFVPFRELK 601 650 bmy_14299T0/1-331 SVSPAALAKS VLAEVPRQLV EY-------- ---------- ------ ENSTTRP00000004121/1-372 SASPVALAKS VLAEVPRQLV EYYRH-GMPL RDLGETS--- -PGSTP ENSP00000268720/1-633 NASPAALAKC VLAEVPKQVV EYYSHRGLPP RSLGVPAGEA SPGCTP ENSBTAP00000016173/1-634 SASPAALAKS VLAEVPRQLV EYYSHKELPP RDLGAHA--- ------