KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:58:10 2014 Check: 00 .. Name: ENSTTRP00000003663/1-493 Len: 553 Check: 9494 Weight: 1.00 Name: ENSP00000360561/1-495 Len: 553 Check: 5037 Weight: 1.00 Name: ENSBTAP00000016080/1-495 Len: 553 Check: 7376 Weight: 1.00 Name: bmy_13889T0/1-524 Len: 553 Check: 9255 Weight: 1.00 Name: BACU018811/1-459 Len: 553 Check: 6990 Weight: 1.00 // 1 50 ENSTTRP00000003663/1-493 MGLTWKERAF TALLGAAAVS GLTTLILFLV EATNVLLPAD TKFGIVFDAG ENSP00000360561/1-495 MGLSRKEQVF LALLGASGVS GLTALILLLV EATSVLLPTD IKFGIVFDAG ENSBTAP00000016080/1-495 MGLTWKQRVF TALLGAAAVS GLTALLLVLV GTMNVLLPPD TKFGIVFDAG bmy_13889T0/1-524 MGLTWKERVF TALLGAAAVS GLTTLILFLV ETTNILLPAD TKFGIVFDAG BACU018811/1-459 MGLTRKEQVF TALLGAAAVS GLTTLILFLV EATNVLLPAD TKFGIVFDAG 51 100 ENSTTRP00000003663/1-493 SSHTSLFVYQ WLANKENXXX XXXXXXXXXX XXPGISSYAS DPAQAGESLQ ENSP00000360561/1-495 SSHTSLFLYQ WLANKENGTG VVSQALACQV EGPGISSYTS NAAQAGESLQ ENSBTAP00000016080/1-495 SSHTSLFVYQ WPANKENDTG IVSQALACQA EGPGISSYAS DPARVGESLQ bmy_13889T0/1-524 SSHTSLFVYQ WPANKENDTG VVSQALACQA KGPGISSYAS DPAQAGESLQ BACU018811/1-459 SSHTSLFVYQ WLANKENDTG VVSQALACQA KGPGISSYAS DPAQAGESLQ 101 150 ENSTTRP00000003663/1-493 GCLEEALALI PKAKRQQTPM FLGATGGMRL LSQKNSSQAE DVFAAVSQAL ENSP00000360561/1-495 GCLEEALVLI PEAQHRKTPT FLGATAGMRL LSRKNSSQAR DIFAAVTQVL ENSBTAP00000016080/1-495 GCLEEALALI PKAKHHETPM FLGATAGMRL LSRKNRSQAE DVFAAVSRAL bmy_13889T0/1-524 GCLEEALALI PKAKHQQTPM FLGATAGMRL LSQKNSSQAE DVFAAVNRVL BACU018811/1-459 GCLEEALALI PKAKHQQTPM FLGATAGMRL LSQKNSSQAE DVFAAVNRVL 151 200 ENSTTRP00000003663/1-493 SRSPVAFWGA ELLAGQDEGA LGWVTINYVL GLLVQ----- ---------- ENSP00000360561/1-495 GRSPVDFWGA ELLAGQAEGA FGWITVNYGL GTLVK----- ---------- ENSBTAP00000016080/1-495 GQSPVDFRGA ELLTGQDEGA FGWITINYIL GLLVK----- ---------- bmy_13889T0/1-524 SRSPVDFWGA ELLAGQDEGA LGWVTINYVL GLLVKVPQTA PGWEGGGGGH BACU018811/1-459 SRSPVDFWGA ELLAGQDEGA LGWVTINYVL GLLVK----- ---------- 201 250 ENSTTRP00000003663/1-493 ---------- ----YSFSGE WIQPLEGTLV GA-DMGGAST QITFVPGGPI ENSP00000360561/1-495 ---------- ----YSFTGE WIQPPEEMLV GALDMGGAST QITFVPGGPI ENSBTAP00000016080/1-495 ---------- ----YSFSGE WIRPLEETLV GALDMGGAST QITFVPGGPI bmy_13889T0/1-524 HGRPQDSVPP VCGQYSFSGE WIRPLEGTLV GALDMGGAST QITFVPGGPI BACU018811/1-459 ---------- ----YSFSGE WIRPLQGTLV GALDMGDAST QITFVPGGPT 251 300 ENSTTRP00000003663/1-493 LXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ---------- ENSP00000360561/1-495 LDKSTQADFR LYGSDYSVYT HSYLCFGRDQ MLSRLLVGLV ---------- ENSBTAP00000016080/1-495 LDKTAQATFR LYGADHTVYT HSYLCFGRDQ ALSRVLAELV ---------- bmy_13889T0/1-524 LDKTTQATFR LYGTEHSVYT HSYLCFGRDQ MLNRLLAGLV QVGCSAGGGR BACU018811/1-459 LDRTTQATFL LCGTERSVYT HSYLCFGRDQ MLNX------ ---------- 301 350 ENSTTRP00000003663/1-493 ---------- -----XXXPS LLVRHPCYHS GYRGTLALAP LYGSPCVQAA ENSP00000360561/1-495 ---------- -----QSRPA ALLRHPCYLS GYQTTLALGP LYESPCVHAT ENSBTAP00000016080/1-495 ---------- -----QASTG LLIRHPCYHS GYRGTLALAS LYESPCAPAA bmy_13889T0/1-524 GTLPGGCSEM PPPSPQSSPG LLVRHPCYHS GYRGTLALAP LYGSPCVQAA BACU018811/1-459 ---------- --------PR GLPSGPSFPS GPQG-----P TPGGP-WGAW 351 400 ENSTTRP00000003663/1-493 APRDLGQNLT VEGTGNPGAC VAAIRGLFNF SSCDGRGDCA FDSVYQPPVR ENSP00000360561/1-495 PPLSLPQNLT VEGTGNPGAC VSAIRELFNF SSCQGQEDCA FDGVYQPPLR ENSBTAP00000016080/1-495 PP-DLSQNLT VEGTGNPGAC VEALRKLFNF SSCDGREDCA FAGVYQPPVQ bmy_13889T0/1-524 PPRDLGQNLT VEGTGNPGAC VAAIRGLFNS SSGDGRGDCA FDRVYQPPVR BACU018811/1-459 DPRWGGVGW- --GGAEPGSS WAPL------ -------PCA LPGQFTPLPQ 401 450 ENSTTRP00000003663/1-493 GQFYAFSNFY HTFHFLNLTS RPPLATANAT IWEFCQRPWK LVEASS-PGQ ENSP00000360561/1-495 GQFYAFSNFY YTFHFLNLTS RQPLSTVNAT IWEFCQRPWK LVEASY-PGQ ENSBTAP00000016080/1-495 GQFYAFSNFY YTFNFLNLTS KPSLSGANAT IWEFCLRPWK LVEASAPPGQ bmy_13889T0/1-524 GQFYAFSNFY HTFHFLNLTS RPPLATANAT VWEFCQRPWK LVEASS-PGQ BACU018811/1-459 ----AFSNFY HTFHFLNLTS RPPLATANAT VWEFCQRPWK LVEESS-PGQ 451 500 ENSTTRP00000003663/1-493 DGQLRDYCAS GLYILTLLLE GYGFSQETWG GIEFREQA-- -GGTDIGWTL ENSP00000360561/1-495 DRWLRDYCAS GLYILTLLHE GYGFSEETWP SLEFRKQA-- -GGVDIGWTL ENSBTAP00000016080/1-495 DRWLRDYCAS GLYILTLLVE GYGFSEETWG GIEFRQQA-- -GGADIGWTL bmy_13889T0/1-524 DRWLRDYCAS GLYILTLLLE GYGFSQETWG GIEFRKQVTA QGERGLG--- BACU018811/1-459 DHWLRDYCAS GLYVLTLLLE GYGFSQETWG GIEFRKQA-- -GGTDIGWTL 501 550 ENSTTRP00000003663/1-493 GYMLNLTTLI PAEAPAQWRA QSYGVWVAGV VFLVLTLTAI LGATVVQ-LW ENSP00000360561/1-495 GYMLNLTGMI PADAPAQWRA ESYGVWVAKV VFMVLALVAV VGAALVQLFW ENSBTAP00000016080/1-495 GYMLNLTNLI PAEAPAQGWA QSFGVWAAGV VFVVLTLAAT LGAVAVQVFW bmy_13889T0/1-524 ---------- -------LRA AAHSL--TGR VARRPVAPTS AGRSATC--- BACU018811/1-459 GYMLNLTSLI PAEAPAQWRG QSYGIWVAGV VFLVLTLMAI LGATAVQ-LW 551 600 ENSTTRP00000003663/1-493 LRD ENSP00000360561/1-495 LQD ENSBTAP00000016080/1-495 LQD bmy_13889T0/1-524 --- BACU018811/1-459 RRD