KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:57:08 2014 Check: 00 .. Name: ENSTTRP00000000169/1-308 Len: 347 Check: 4576 Weight: 1.00 Name: ENSP00000419085/1-244 Len: 347 Check: 3647 Weight: 1.00 Name: BACU009319/1-304 Len: 347 Check: 7775 Weight: 1.00 Name: ENSBTAP00000015813/1-244 Len: 347 Check: 6404 Weight: 1.00 Name: bmy_03448T0/1-271 Len: 347 Check: 9827 Weight: 1.00 // 1 50 ENSTTRP00000000169/1-308 ---------- ---------- --------MV FLVAHPVQLV HLSVLFDVVF ENSP00000419085/1-244 ---------- ---------- ---------- ---------- ---------- BACU009319/1-304 ---------- ---------- ---------- -----MENSA VRQCSSSLLQ ENSBTAP00000015813/1-244 ---------- ---------- ---------- ---------- ---------- bmy_03448T0/1-271 MERPAEEKED RSPESVACSG CWAGMRGRAP GFRCSPVGAA DFQDITPRGM 51 100 ENSTTRP00000000169/1-308 AEVGFSETFS SQRLSFTLPS AVGQFRWQKR PQLLPVGP-- -----LGRSM ENSP00000419085/1-244 ---------- ---------- ---------- ---------- ---------M BACU009319/1-304 RGNRKHHKFT FQNLQKLRAH QCQVLELASA DPSATIQLTP GGAGLRGSER ENSBTAP00000015813/1-244 ---------- ---------- ---------- ---------- ---------M bmy_03448T0/1-271 AKAVLSSTLF LLNLVFPRPC LLRGSVSPCH QQSASFGGRR GHSSFLGSSM 101 150 ENSTTRP00000000169/1-308 QWCLLLLWAQ GLRQARLPAS -GAVTGRIVT TGNISAEEGG SVTLQCHLSS ENSP00000419085/1-244 RWCLLLIWAQ GLRQAPLAS- -GMMTGTIET TGNISAEKGG SIILQCHLSS BACU009319/1-304 EH----LSGK VPAPAAVGVA VGAVTGRIVT TGNISAEEGG SVTLQCHLSS ENSBTAP00000015813/1-244 QWCLLLIWAQ VLKQALLPTS -GAVTGRIVT MGNISAEEGG SVTLQCHLSS bmy_03448T0/1-271 QWCLLLLWAQ GLRPARLPAS -GAVTGRIVT TGNISAEEGG SVTLQCHLSS 151 200 ENSTTRP00000000169/1-308 TTAKVTQVNW KQQDQVLAIH HASLGWHIDP AFTERMVPGP NLGLTLQSLT ENSP00000419085/1-244 TTAQVTQVNW EQQDQLLAIC NADLGWHISP SFKDRVAPGP GLGLTLQSLT BACU009319/1-304 TTAKVTQVNW KQQDQVLAVH HASLGWYIDP AFTERTVPGP NLGLTLRSLT ENSBTAP00000015813/1-244 TTAKVTQVNW NLQDQVVAIH HDSLGWHINP AFKERVVPDS NLGLTLRWLT bmy_03448T0/1-271 TTAKVTQVNW KQQDQVLAIH HASLGWHIDP AFTERMVPGP NLGLTLQSLT 201 250 ENSTTRP00000000169/1-308 RNDTGEYICI YHTYPDGIYK GTVFLEVLQS SXXXXXXXXX XXXXXXXXXV ENSP00000419085/1-244 VNDTGEYFCI YHTYPDGTYT GRIFLEVLES SVAEHGARFQ IPLLGAMAAT BACU009319/1-304 RNDTGQYICI YHTYPDGIYK GTLFLEVLQS PVAEHSAGFQ IPLLGAMATV ENSBTAP00000015813/1-244 SNDTGQYTCV YHTYPDGIYK GVLFLQVLRH SVAEYSAGFQ IPLLGAMAAV bmy_03448T0/1-271 RNDTGEYICI YHTYPDGIYK GTLFLEVLQS SVAEHSAGFQ IPLLGAMATV 251 300 ENSTTRP00000000169/1-308 LAVIGTAVIV VLTLAGKKKS LRIRSAEGGL GRRLSEQEEW RPGVPSSPGS ENSP00000419085/1-244 LVVICTAVIV VVALTRKKKA LRIHSVEGDL RRKSAGQEEW SPSAPSPPGS BACU009319/1-304 LAVIGTAVIV VVTLARKK-L LRIRSAEGGL GRRPSEQEEW RPSVLSSPGS ENSBTAP00000015813/1-244 LVVICIAVIA VATLARKKKS LRIRSAEGDL GRGPSEPEAC RPRVVSSPGS bmy_03448T0/1-271 LAVIGTAVIV VVTLARKK-- ---------- ---------- ---------- 301 350 ENSTTRP00000000169/1-308 CVRAD---AG LCREQPGEDR AEPEAHDYFN VLSYRSLASF SFPAEEG ENSP00000419085/1-244 CVQAEAAPAG LCGEQRGEDC AEL--HDYFN VLSYRSLGNC SFFTETG BACU009319/1-304 CVRAD---AD LCREQPGEDR AEPEPHDYSN VLSYRSLASF SVPAEKG ENSBTAP00000015813/1-244 CVQAD---AG LCDDQGSEDH AEAEPHEYFN VLSYRSLASF SFPTETG bmy_03448T0/1-271 ---------- ---------- --------WT IL-------- -------