KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:56:59 2014 Check: 00 .. Name: ENSP00000315700/1-559 Len: 575 Check: 4381 Weight: 1.00 Name: ENSBTAP00000015764/1-575 Len: 575 Check: 6079 Weight: 1.00 Name: ENSTTRP00000015737/1-559 Len: 575 Check: 1115 Weight: 1.00 Name: bmy_08869T0/1-561 Len: 575 Check: 6195 Weight: 1.00 Name: BACU010424/1-417 Len: 575 Check: 2011 Weight: 1.00 // 1 50 ENSP00000315700/1-559 MKVITCEIAW HNKEPVYSLD FQHGTAGRIH RLASAGVDTN VRIWKVEKGP ENSBTAP00000015764/1-575 MKVITCEIAW HNKEPVYSLD FQYGAAGRIH RLASAGVDTA VRVWKVEKGP ENSTTRP00000015737/1-559 MKLITCEIAW HNKEPVYSLD FQHGAAGRIH RLASAGVDTA VRIWKVEKGP bmy_08869T0/1-561 MKVITCEIAW HNKEPVYSLD FQHGAAGRIH RLASAGVDTA VRIWKVEKGP BACU010424/1-417 MKVITCEIAW HNKEPVYSLD FQHGAAGRIH RLASAGVDTA VRIWKVEKGP 51 100 ENSP00000315700/1-559 DGKAIVEFLS NLARHTKAVN VVRFSPTGEI LASGGDDAVI LLWKVNDNKE ENSBTAP00000015764/1-575 DGKAIVEFLS NLARHTKAVN VVRFSPNGEI LASGGDDAVI LLWKVNDNKE ENSTTRP00000015737/1-559 DGKAIVEFLS NLVRHTKAVN VVRFSPSGEV LASGGDDAVI LLWKVNDNKE bmy_08869T0/1-561 DGKAIVEFLS NLARHTKAVN VVRFSPNGEL LASGGDDAVI LLWKVNDNKE BACU010424/1-417 DGKAIVEFLS NLARHTKAVN VVRFSPNGEI LASGGDDAVI LLWKVNDNKE 101 150 ENSP00000315700/1-559 PEQIAFQDED EAQLNKENWT VVKTLRGHLE DVYDICWATD GNLMASASVD ENSBTAP00000015764/1-575 PEQVAFQDED EAQLNKENWT VVKTLRGHLE DVYDICWATD GNLMASASVD ENSTTRP00000015737/1-559 PEQIAFQDDD EAQLNKENWT VVKTLRGHLE DVYDICWATD GNLMASASVD bmy_08869T0/1-561 AEQIAFQDED EAQLNKENWT VVKTLRGHLE DVYDICWATD GNLMASASVD BACU010424/1-417 PEQIAFQDED EAQLNKENWT VVKTLRGHLE DVYDICWATD GNLMASASVD 151 200 ENSP00000315700/1-559 NTAIIWDVSK GQKISIFNEH KSYVQGVTWD PLGQYVATLS CDRVLRVYSI ENSBTAP00000015764/1-575 NTAIMWDVSK GQKISIFNEH KSYVQGVTWD PLGQYVATLS CDRILRVYST ENSTTRP00000015737/1-559 NTAIIWDVSK GQKISIFNEH KSYVQGVTWD PLGQYVATLS CDRILRVYST bmy_08869T0/1-561 NTAIIWDVSK GQKISIFNEH KSYVQGVTWD PLGQYVATLS CDRILRVYST BACU010424/1-417 NTAIIWDVSK GQKISIFNEH KSYVQGVTWD PLGQYVATLS CD-------- 201 250 ENSP00000315700/1-559 QKKRVAFNVS KMLSGIGAEG EARSYRMFHD DSMKSFFRRL SFTPDGSLLL ENSBTAP00000015764/1-575 QKKRVAFNVS KMLSGVGAEG EARSYRMFHD DSMKSFFRRL SFTPDGSLLL ENSTTRP00000015737/1-559 LKKRVAFNVS KMLSGVGAEG EARSYRMFHD DSMKSFFRRL SFTPDGSLLL bmy_08869T0/1-561 QKKRVAFNVS KMLSGVGAEG EARSYRMFHD DSMKSFFRRL SFTPDGSLLL BACU010424/1-417 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000315700/1-559 TPAGCVESGE NVMNTTYVFS RKNLKRPIAH LPCPGKATLA VRCCPVYFEL ENSBTAP00000015764/1-575 TPAGCVESGE NVTNTTYVFS RKNLKRPIAH LPCPAKATLA VRCCPVYFEL ENSTTRP00000015737/1-559 TPAGCVESGE NVTNTTYVFS RKNLKRPIAH LPCPGKATLA VRCCPVYFEL bmy_08869T0/1-561 TPAGCVESGE NVTNTTYVFS RKNLKRPIAH LPCPGKATLA VRCCPVYFEL BACU010424/1-417 ---------- ---------- -----RPIAH LPCPGKATLA VRCCPVYFEL 301 350 ENSP00000315700/1-559 RPVVET---- ---------G VELMSLPYRL VFAVASEDSV LLYDTQQSFP ENSBTAP00000015764/1-575 RPVAEAGVLS DQGREGREPG MELVSLPYRL VFAVASEDSV LLYDTQQLFP ENSTTRP00000015737/1-559 RPVVEA---- ---------G VELVSLPYRL VFAVASEDSV LLYDTQQLFP bmy_08869T0/1-561 RPAVEA---- -------EPG VELVSLPYRL VFAVASEDSV LLYDTQQLFP BACU010424/1-417 RPVVEA---- -------EPG VELVSLPYRL VFAVASEDSV LLYDTQQVFP 351 400 ENSP00000315700/1-559 FGYVSNIHYH TLSDISWSSD GAFLAISSTD GYCSFVTFEK DELGIPLKEK ENSBTAP00000015764/1-575 FGYVSNIHYH TLSDISWSSD GAFLAISSTD GYCSFVTFEK DELGIPLKEK ENSTTRP00000015737/1-559 FGYVSNIHYH TLSDISWSSD GAFLAISSTD GYCSFVTFEK DELGIRLKEK bmy_08869T0/1-561 FGYVSNIHYH TLSDISWSSD GAFLAISSTD GYCSFVTFEK DELGIRLKEK BACU010424/1-417 FGYVSNIHYH TLSDISWSSD GAFLAISSTD GYCSFVTFEK DELGIRLKEK 401 450 ENSP00000315700/1-559 PVLNMRTPDT AKKTKSQTHR GSSPGPRPVE GTPASRTQDP SSPGTTPPQA ENSBTAP00000015764/1-575 PVLSLRTPDT AKKTKGQTPS GSSPGPRLGE GTPTGRVQDP SSPSTTPPQA ENSTTRP00000015737/1-559 PVVCVRTPDT AKKTKSQTHP GSSPGPRLGE GTPSSRVRDP SSPSATPPQA bmy_08869T0/1-561 PVLCVRTPDT VKKTKSQTHP GSSPGPRLGE GTPSSRVRDP SSPSATPPQA BACU010424/1-417 PVLCVRTPDT AKKTKSQTHP GSSPGPRLGE GTPSSRVRDP SSPSATPPQA 451 500 ENSP00000315700/1-559 RQAPAPTVIR DPPSITPAVK SPLPGPSEEK TLQPSSQNTK AHPSRRVTLN ENSBTAP00000015764/1-575 KQSQAPPAAK DTPMAALGAR GSPAGPPKEK PLQPSGQNAK AQPSRRVTLN ENSTTRP00000015737/1-559 KQSPAPTAAK DTPVTAPGAR GFLAGPSEEK TLQPGSQNVK AHASRRVTLN bmy_08869T0/1-561 KQSPAPTAAK DMPVTAPGAR GFLAGPSEEK TLQPGSQNAK AHPSRRVTVN BACU010424/1-417 KQSPAPTAAK DTPVTAPGAR GFLAGPSEEK TLQPGSQNAK AHPSRRVTLN 501 550 ENSP00000315700/1-559 TLQAWSKTTP RRINLTPLKT DTPPSSVPTS VISTPSTEEI Q--SETPGDA ENSBTAP00000015764/1-575 TLQAWSKPTS RRINLIPLKT DSPLNSISTP LTSSPSTEEI QSASETPADP ENSTTRP00000015737/1-559 TLQAWSKSTP RRINLIPLKT DTPLNSIPTS IISSPSTEEI Q--SEMPGDL bmy_08869T0/1-561 TLQAWSKSAP RRINLIPLKT DTPPNSIPTS VISSPSTEEI Q--PEMPGDL BACU010424/1-417 TLQAWSKSTP R--------- ---------- ---------- ---------- 551 600 ENSP00000315700/1-559 QGSPPELKRP RLDENKGGTE SLDP- ENSBTAP00000015764/1-575 QVSPLELKRP RLGEHGEGPR VMDPQ ENSTTRP00000015737/1-559 QVSPPELKRP RLSEHREGPQ GLDP- bmy_08869T0/1-561 QVSPPELKRP RLSEHKEGPQ CLDP- BACU010424/1-417 ---------- ---------- -----