KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:56:36 2014 Check: 00 .. Name: ENSTTRP00000001534/1-1450 Len: 1495 Check: 8679 Weight: 1.00 Name: BACU008393/1-1030 Len: 1495 Check: 4456 Weight: 1.00 Name: ENSP00000323720/1-1454 Len: 1495 Check: 1000 Weight: 1.00 Name: bmy_06994T0/1-993 Len: 1495 Check: 1535 Weight: 1.00 Name: ENSBTAP00000015654/1-1456 Len: 1495 Check: 6581 Weight: 1.00 // 1 50 ENSTTRP00000001534/1-1450 MAPVQLEN-Q LVPPGGGGGG SSGPASAPAP PPPGAAVAAA AAAAASPGYR BACU008393/1-1030 ---------- ---------- ---------- ---------- ---------- ENSP00000323720/1-1454 MAPVQLENHQ LVPPGGGGGG SGGPPSAPAP PPPGAAVAAA AAAAASPGYR bmy_06994T0/1-993 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015654/1-1456 MAPVQLENHQ LVPPGGSGSG --GPASAPAP PPPGAAVAAA AAAAASPGYR 51 100 ENSTTRP00000001534/1-1450 LSTLIEFLLH RAYSELMXXX XXLPRKSDVE RKIEIVQFAS RTRQLFVRLL BACU008393/1-1030 ---------- ---------- ---------- ---------- ---------- ENSP00000323720/1-1454 LSTLIEFLLH RAYSELMVLT DLLPRKSDVE RKIEIVQFAS RTRQLFVRLL bmy_06994T0/1-993 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015654/1-1456 LSTLIEFLLH RAYSELMVLT DLLPRKSDVE RKIEIVQFAS RTRQLFVRLL 101 150 ENSTTRP00000001534/1-1450 ALVKWANNAG KVEKCAMISS FLDHQAILFV DTADRLASLA RDALVHARLP BACU008393/1-1030 ---------- ---------- ---------- ---------- ---------- ENSP00000323720/1-1454 ALVKWANNAG KVEKCAMISS FLDQQAILFV DTADRLASLA RDALVHARLP bmy_06994T0/1-993 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015654/1-1456 ALVKWANNAG KVEKCAMISS FLDQQAILFV DTADRLASLA RDALVHARLP 151 200 ENSTTRP00000001534/1-1450 SFAIPYAIDV LTTGSYPRLP TCIRDKIIPP DPITKIEKQA TLHQLNQILR BACU008393/1-1030 ---------- ---------- ---------- ---------- ---------- ENSP00000323720/1-1454 SFAIPYAIDV LTTGSYPRLP TCIRDKIIPP DPITKIEKQA TLHQLNQILR bmy_06994T0/1-993 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015654/1-1456 SFAIPYAIDV LTTGSYPRLP TCIRDKIIPP DPITKIEKQA TLHQLNQILR 201 250 ENSTTRP00000001534/1-1450 HRLVTTDLPP QLANLTVANG RVKFRVEGEF EATLTVMGDD PDVPWRLLKL BACU008393/1-1030 ---------- ---------- ---------- ---------- ---------- ENSP00000323720/1-1454 HRLVTTDLPP QLANLTVANG RVKFRVEGEF EATLTVMGDD PDVPWRLLKL bmy_06994T0/1-993 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015654/1-1456 HRLVTTDLPP QLANLTVANG RVKFRVEGEF EATLTVMGDD PDVPWRLLKL 251 300 ENSTTRP00000001534/1-1450 EILVEDKETG --DGRALVHS MQINFIHQLV QSRLFADEKP LQDMYNCLHS BACU008393/1-1030 ---------- ---------- ---------- ---------- ---------- ENSP00000323720/1-1454 EILVEDKETG --DGRALVHS MQISFIHQLV QSRLFADEKP LQDMYNCLHS bmy_06994T0/1-993 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015654/1-1456 EILVEDKETG VEDGRALVHS MQINFIHQLV QSRLFADEKP LQDMYNCLHS 301 350 ENSTTRP00000001534/1-1450 FCLSLQLEVL HSQTLMLIRE RWGDLVQVER YHAGKCLSLS VWNQQVLGRK BACU008393/1-1030 ---------- ---------- ---------- ---------- ---------- ENSP00000323720/1-1454 FCLSLQLEVL HSQTLMLIRE RWGDLVQVER YHAGKCLSLS VWNQQVLGRK bmy_06994T0/1-993 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015654/1-1456 FCLSLQLEVL HSQTLMLIRE RWGDLVQVER YHAGKCLSLS VWNQQVLGRK 351 400 ENSTTRP00000001534/1-1450 TGTASVHKVT IKIDENDVSK PLQIFHDPPL PASDSKLVER AMKIDHLSIE BACU008393/1-1030 ---------- ---------- ---------- ---------- ---------- ENSP00000323720/1-1454 TGTASVHKVT IKIDENDVSK PLQIFHDPPL PASDSKLVER AMKIDHLSIE bmy_06994T0/1-993 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015654/1-1456 TGTASVHKVT IKIDENDASK PLQIFHDPPL PASDSKLVER AMKIDHLSIE 401 450 ENSTTRP00000001534/1-1450 KLLIDSVHAR AHQKLQELKA ILRGFNANEN XXXXXXXXXX XXXXXXXXXX BACU008393/1-1030 ---------- ---------- ---------- ---------- ---------- ENSP00000323720/1-1454 KLLIDSVHAR AHQKLQELKA ILRGFNANEN SSIETALPAL VVPILEPCGN bmy_06994T0/1-993 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015654/1-1456 KLLIDSVHAR AHQKLQELKA ILRGVNANEN SSIETALPAL VVPILEPCGN 451 500 ENSTTRP00000001534/1-1450 XXXXXXXXXX XXXXXXXXXX XXXQATLDDM EKSVNDDMKR IIPWIQQLKF BACU008393/1-1030 ---------- ---MFQVMLY GLDQATLDDM EKSVNDDMKR IIPWIQQLKF ENSP00000323720/1-1454 SECLHIFVDL HSGMFQLMLY GLDQATLDDM EKSVNDDMKR IIPWIQQLKF bmy_06994T0/1-993 ---------- ---MFQVMLY GLDQATLDDM EKSVNDDMKR IIPWIQQLKF ENSBTAP00000015654/1-1456 SECLHIFVDL HSGMFQLMLY GLDQATLDDM EKSVNDDMKR IIPWIQQLKF 501 550 ENSTTRP00000001534/1-1450 WLGQQRCKQS IKHLPTISSE TLQLSNYSTH PIGNLSKNKL FIKLTRLPQY BACU008393/1-1030 WLGQQRCRQS IKHLPTISSE TLQLSNYSTH PIGNLSKNKL FIKLTRLPQY ENSP00000323720/1-1454 WLGQQRCKQS IKHLPTISSE TLQLSNYSTH PIGNLSKNKL FIKLTRLPQY bmy_06994T0/1-993 WLGQQRCKQS IKHLPTISSE TLQLSNYSTH PIGNLSKNKL FIKLTRLPQY ENSBTAP00000015654/1-1456 WLGQQRCKQS IKHLPTITSE TLQLSNYSTH PIGNLSKNKL FVRLTRLPQY 551 600 ENSTTRP00000001534/1-1450 YIVVEMLEVP NKPTQLSYQY YLMSVNAADR EDSPVMALLL LQFKENIQEL BACU008393/1-1030 YIVVEMLEVP NKPTQLSYKY YFMSVNAADR EDSPVLALLL QQFKENIQEL ENSP00000323720/1-1454 YIVVEMLEVP NKPTQLSYKY YFMSVNAADR EDSPAMALLL QQFKENIQDL bmy_06994T0/1-993 YIVVEMLEVP NKPTQLSYKY YFMSVNAADR EDSPVMALLL QQFKENIQEL ENSBTAP00000015654/1-1456 YIVVEMLEVP NKPTQLSYKY YFLSVNAVDR DDSPLMALLL QQFKENLQES 601 650 ENSTTRP00000001534/1-1450 VYRTKNGKQP RSSTKRKLSD DLCPVEPKKT KRSGEMCAFN KVLAHFVAMC BACU008393/1-1030 VYRTKNGKQP RSSTKRKLSE GLCPVEPKKT KRSGEMCAFN KVLAHFVAMC ENSP00000323720/1-1454 VFRTKTGKQT RTNAKRKLSD DPCPVESKKT KRAGEMCAFN KVLAHFVAMC bmy_06994T0/1-993 VYRTKNGKQP RSSTKRKLSD DLCPVEPKKT KRSGEMCAFN KVLAHFVAMC ENSBTAP00000015654/1-1456 VYRTKNGKQP RTSTKRKLSD DLCPVEPKKT KRSGEMRAFN KVLAHFVAMC 651 700 ENSTTRP00000001534/1-1450 DTNMPFVGLR LELSNLEIPH KGVQMEGDGF SHAIRLLXXX XXXXXXXXXX BACU008393/1-1030 DTNMPFVGLR LELSNLEIPH QGVQMEGDGF SHAIRLLKIP PCKGVNEETQ ENSP00000323720/1-1454 DTNMPFVGLR LELSNLEIPH QGVQVEGDGF SHAIRLLKIP PCKGITEETQ bmy_06994T0/1-993 DTNMPFVGLR LELSNLEIPH QGVQMEGDGF SHAIRLLKIP PCKGVNEETQ ENSBTAP00000015654/1-1456 DTNMPFVGLR LELSNLEIPH QGVQMEGDGF SHAIRLLKIP PCKGINEETQ 701 750 ENSTTRP00000001534/1-1450 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXPSRHVYLT BACU008393/1-1030 KALDRSLLDC TFRLQGRNNR TWVAELVFAN CPLNGTSTRE QGPSRHVYLT ENSP00000323720/1-1454 KALDRSLLDC TFRLQGRNNR TWVAELVFAN CPLNGTSTRE QGPSRHVYLT bmy_06994T0/1-993 KALDRSLLDC TFRLQGRNNR TWVAELVFAN CPLNGTSTRE QGPSRHVYLT ENSBTAP00000015654/1-1456 KALDRSLLDC TFRLQGRNNR TWVAELVFAN CPLNGTSTRE QGPSRHVYLT 751 800 ENSTTRP00000001534/1-1450 YENLLSEPVG GRKVVEMFLN DWNSIARLYE CVLEFARSLP DIPTHLNIFS BACU008393/1-1030 YENLLSEPVG GRKVVEMFLN DWNSIARLYE CVLEFARSLP DIPTHLNIFS ENSP00000323720/1-1454 YENLLSEPVG GRKVVEMFLN DWNSIARLYE CVLEFARSLP DIPAHLNIFS bmy_06994T0/1-993 YENLLSEPVG GRKVVEMFLN DWNSIARLYE CVLEFARSLP DIPTHLNIFS ENSBTAP00000015654/1-1456 YENLLSEPVG GRKVVEMFLN DWNSIARLYE CVLEFARSLP DIPSHLNIFS 801 850 ENSTTRP00000001534/1-1450 EVRVYNYRKL ILCYGTTKGS SISIQWNSIH QKFHISLGTV GPNSGCSNCH BACU008393/1-1030 EVRVYNYRKL ILCYGTTKGS SISIQWNSIH QKFHISLGTV GPNSGCSNCH ENSP00000323720/1-1454 EVRVYNYRKL ILCYGTTKGS SISIQWNSIH QKFHISLGTV GPNSGCSNCH bmy_06994T0/1-993 EVRVYNYRKL ILCYGTTKGS SISIQWNSIH QKFHISLGTV GPNSGCSNCH ENSBTAP00000015654/1-1456 EVRVYNYRKL ILCYGTTKGS SISIQWNSIH QKFHISLGTV GPNSGCSNCH 851 900 ENSTTRP00000001534/1-1450 NTILHQLQEM FNKTPNVVQL LQVLFDTQAP LNAINKLPTV PMLGLTQRTN BACU008393/1-1030 NTILHQLQEM FNKTPNVVQL LQVLFDTQAP LNAINKLPTV PMLGLTQRTN ENSP00000323720/1-1454 NTILHQLQEM FNKTPNVVQL LQVLFDTQAP LNAINKLPTV PMLGLTQRTN bmy_06994T0/1-993 NTILHQLQEM FNKTPNVVQL LQVLFDTQAP LNAINKLPTV PMLGLTQRTN ENSBTAP00000015654/1-1456 NTILHQLQEM FNKTPNVVQL LQVLFDTQAP LNAINKLPTV PMLGLTQRTN 901 950 ENSTTRP00000001534/1-1450 TAYQCFSILP QSSTHIRLAF RNMYCIDIYC RSRGVVAIRD GAYSLFDNSK BACU008393/1-1030 TAYQCFSILP QSSTHIRLAF RNMYCIDIYC RSRGVVAIRD GAYSLFDNSK ENSP00000323720/1-1454 TAYQCFSILP QSSTHIRLAF RNMYCIDIYC RSRGVVAIRD GAYSLFDNSK bmy_06994T0/1-993 TAYQCFSILP QSSTHIRLAF RNMYCIDIYC RSRGVVAIRD GAYSLFDNSK ENSBTAP00000015654/1-1456 TAYQCFSILP QSSTHIRLAF RNMYCIDIYC RSRGVVAIRD GAYSLFDNSK 951 1000 ENSTTRP00000001534/1-1450 LVEGFYPAPG LKTFLNMFVD SNQDARRRSV NEDDNPPSPI GGDMMDSLIS BACU008393/1-1030 LVEGFYPAPG LKTFLNMFVD SNQDARRRSV NEDDNPPSPI GGDMMDSLIS ENSP00000323720/1-1454 LVEGFYPAPG LKTFLNMFVD SNQDARRRSV NEDDNPPSPI GGDMMDSLIS bmy_06994T0/1-993 LVEGFYPAPG LKTFLNMFVD SNQDARRRSV NEDDNPPSPI GGDMMDSLIS ENSBTAP00000015654/1-1456 LVEGFYPAPG LKTFLNMFVD SNQDARRRSV NEDDNPPSPI GGDMMDSLIS 1001 1050 ENSTTRP00000001534/1-1450 QLQPPPQQQP -PKQPGSSGA YPLT-PPTS- HSTVNQSPSM MHTQSPGNLH BACU008393/1-1030 QLQPPPQQQP FPKQPGSSGA YPLTSPPTSY HSTVNQSPSM MHTQSPGNLH ENSP00000323720/1-1454 QLQPPPQQQP FPKQPGTSGA YPLTSPPTSY HSTVNQSPSM MHTQSPGNLH bmy_06994T0/1-993 QLQPPPQQQP FPKQPGSSGA YPLTSPPTSY HSTVNQSPSM MHTQSPGNLH ENSBTAP00000015654/1-1456 QLQPPPQQQP FPKQPGSSGA YPLTSPPTSY HSTVNQSPSM MHTQSPGNLH 1051 1100 ENSTTRP00000001534/1-1450 AASSPSGALR APSPASFVPT PPPSSHGISI GPGASFASPH GTLDPSSPYT BACU008393/1-1030 AASSPSGALR APSPASFVPT PPPSSHGISI GPGASFASPH GTLDPSSPYT ENSP00000323720/1-1454 AASSPSGALR APSPASFVPT PPPSSHGISI GPGASFASPH GTLDPSSPYT bmy_06994T0/1-993 AASSPSGALR APSPASFVPT PPPSSHGISI GPGASFASPH GTLDPSSPYT ENSBTAP00000015654/1-1456 AASSPSGALR APSPASFVPT PPPSSHGISI GPGASFASPH GTLDPSSPYT 1101 1150 ENSTTRP00000001534/1-1450 MVSPSGRAGN WPGSPQVSGP SPATRMPGMS PANPSLHSPV PDASHSPRAG BACU008393/1-1030 MVSPSGRAGN WPGSPQVSGP SPATRMPGMS PANPSLHSPV PDASHSPRAG ENSP00000323720/1-1454 MVSPSGRAGN WPGSPQVSGP SPAARMPGMS PANPSLHSPV PDASHSPRAG bmy_06994T0/1-993 MVSPSGRAGN WPGSPQVSGP SPATRMPGMS PANPSLHSPV PDASHSPRAG ENSBTAP00000015654/1-1456 MVSPSGRAGN WPGSPQVSGP SPATRMPGMS PANPSLHSPV PDASHSPRAG 1151 1200 ENSTTRP00000001534/1-1450 TSSQTMPTNM PPPRKLPQRS WAASIPTILT HSALNILLLP SPTPGLVPGL BACU008393/1-1030 TSSQTMPTNM PPPRKLPQRS WAASIPTILT HSALNILLLP SPTPGLVPGL ENSP00000323720/1-1454 TSSQTMPTNM PPPRKLPQRS WAASIPTILT HSALNILLLP SPTPGLVPGL bmy_06994T0/1-993 TSSQTMPTNM PPPRKLPQRS WAASIPTILT HSALNILLLP SPTPGLVPGL ENSBTAP00000015654/1-1456 TSSQTMPTNM PPPRKLPQRS WAASIPTILT HSALNILLLP SPTPGLVPGL 1201 1250 ENSTTRP00000001534/1-1450 AGSYLCSPLE RFLGSVIMRR HLQRIIQQET LQLINSNEPG VIMFKTDALK BACU008393/1-1030 AGSYLCSPLE RFLGSVIMRR HLQRIIQQET LQLINSNEPG VIMFKTDALK ENSP00000323720/1-1454 AGSYLCSPLE RFLGSVIMRR HLQRIIQQET LQLINSNEPG VIMFKTDALK bmy_06994T0/1-993 AGSYLCSPLE RFLGSVIMRR HLQRIIQQET LQLINSNEPG VIMFKTDALK ENSBTAP00000015654/1-1456 AGSYLCSPLE RFLGSVIMRR HLQRIIQQET LQLINSNEPG VIMFKTDALK 1251 1300 ENSTTRP00000001534/1-1450 CRVALSPKTN QTLQLKVTPE NAGQWKPDEL QVLEKFFETR VAGPPFKANT BACU008393/1-1030 CRVALSPKTN QTLQLKVTPE NAGQWKPDEL QVLEKFFETR VAGPPFKANT ENSP00000323720/1-1454 CRVALSPKTN QTLQLKVTPE NAGQWKPDEL QVLEKFFETR VAGPPFKANT bmy_06994T0/1-993 CRVALSPKTN QTLQLKVTPE NAGQWKPDEL QVLEKFFETR VAGPPFKANT ENSBTAP00000015654/1-1456 CRVALSPKTN QTLQLKVTPE NAGQWKPDEL QVLEKFFETR VAGPPFKANT 1301 1350 ENSTTRP00000001534/1-1450 LIAFTKLLGA PTHILRDCVH IMKLEL--FP DQATQLKWNV QFCLTIPPSA BACU008393/1-1030 LIAFTKLLGA PTHILRDCVH FMKLEL--FP DQATQLKWNV QFCLTIPPSA ENSP00000323720/1-1454 LIAFTKLLGA PTHILRDCVH IMKLEL--FP DQATQLKWNV QFCLTIPPSA bmy_06994T0/1-993 LIAFTKLLGA PTHILRDCVH IMKLEL--FP DQATQLKWNV QFCLTIPPSA ENSBTAP00000015654/1-1456 LIAFTKLLGA PTHILRDCVH IMKLELKQFP DQATQLKWNV QFCLTIPPSA 1351 1400 ENSTTRP00000001534/1-1450 PPIAPPGTPA VVLKSKMLFF LQLTQKTSVP PQEPVSIIVP IIYDMASGTT BACU008393/1-1030 PPIAPPGTPA VVLKSKMLFF LQLTQKTSVP PQEPVSIIVP IIYDMASGTT ENSP00000323720/1-1454 PPIAPPGTPA VVLKSKMLFF LQLTQKTSVP PQEPVSIIVP IIYDMASGTT bmy_06994T0/1-993 PPIAPPGTPA VVLKSKMLFF LQLTQKTSVP PQEPVSIIVP IIYDMASGTT ENSBTAP00000015654/1-1456 PPIAPPGTPA VVLKSKMLFF LQLTQKTSVP PQEPVSIIVP IIYDMASGTT 1401 1450 ENSTTRP00000001534/1-1450 QQADIPRQQN SSVAAPMMVS NILKRFAEMN PPRQGECTIF AAVRDLMANL BACU008393/1-1030 QQADIPRQQN SSAAPPMMVS NILKRFAEMN PPRQVSASVS GVRRVETGDF ENSP00000323720/1-1454 QQADIPRQQN SSVAAPMMVS NILKRFAEMN PPRQGECTIF AAVRDLMANL bmy_06994T0/1-993 QQADIPRQQN SSVAAPMMVS NILKRFAEMN PPRQGECTIF AAVRDLMANL ENSBTAP00000015654/1-1456 QQADIPRQQN SSVAAPMMVS NILKRFAEMN PPRQGECTIF AAVRDLMANL 1451 1500 ENSTTRP00000001534/1-1450 ---------- ---TLPPG-- ---------- ------GRP- ----- BACU008393/1-1030 ETSHQQKWRR PLGKLPAGPL AGRRLGGGQG LHAPRTGRQN TTRGM ENSP00000323720/1-1454 ---------- ---TLPPG-- ---------- ------GRP- ----- bmy_06994T0/1-993 ---------- ---TLPPG-- ---------- ------GRP- ----- ENSBTAP00000015654/1-1456 ---------- ---TLPPG-- ---------- ------GRP- -----