KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:56:34 2014 Check: 00 .. Name: ENSTTRP00000001118/1-1307 Len: 1456 Check: 2643 Weight: 1.00 Name: bmy_00193T0/1-1249 Len: 1456 Check: 2060 Weight: 1.00 Name: ENSP00000458986/1-1309 Len: 1456 Check: 7988 Weight: 1.00 Name: ENSBTAP00000015643/1-1311 Len: 1456 Check: 6361 Weight: 1.00 // 1 50 ENSTTRP00000001118/1-1307 MLLNGDCPES LKKEEGAAEP PRENGLDEAE PGEETTGQEV IVIQDTGFSV bmy_00193T0/1-1249 ---------- --MSWGAV-- ---------- ---------- -------LQF ENSP00000458986/1-1309 MLLNGDCPES LKKEAAAAEP PRENGLDEAG PGDETTGQEV IVIQDTGFSV ENSBTAP00000015643/1-1311 MLLNGDCPES LKKEEGPAEP PRENGLDETE PGEETTGQEV IVIQDTGFSV 51 100 ENSTTRP00000001118/1-1307 KILAPGIEPF SLQVSPQEMV QEIHQVLMDR EDTCHRTCFS LHLDGNMLDH bmy_00193T0/1-1249 EVLPPLVVPW LTFL------ ---------- ---CWVGCCP ----GNALP- ENSP00000458986/1-1309 KILAPGIEPF SLQVSPQEMV QEIHQVLMDR EDTCHRTCFS LHLDGNVLDH ENSBTAP00000015643/1-1311 KILAPGIEPF SLQVSPQEMV QEIHQVLMDR EDTCHRTCFS LHLDGNMLDH 101 150 ENSTTRP00000001118/1-1307 FSELRS-EGL QEGSVLRVVE EPYTVREARI HVRHVRDLLK SLDPSDAFNG bmy_00193T0/1-1249 ---------- -----IPLPT EPYTVREARI HVRHVRDLLK SLDPSDAFNG ENSP00000458986/1-1309 FSELRSVEGL QEGSVLRVVE EPYTVREARI HVRHVRDLLK SLDPSDAFNG ENSBTAP00000015643/1-1311 FSELRSVEGL QEGSVLRVVE EPYTVREARI HVRHVRDLLK SLDPSDAFNG 151 200 ENSTTRP00000001118/1-1307 VDCNSLSFLS VFTDGDLG-- ---------- ---------- ---------- bmy_00193T0/1-1249 VDCNSLSFLS VFTDGDLGGA GGIGAGGWAE GPGASWPGAG EGAKGPAFPP ENSP00000458986/1-1309 VDCNSLSFLS VFTDGDLG-- ---------- ---------- ---------- ENSBTAP00000015643/1-1311 VDCNSLSFLS VFTDGDLG-- ---------- ---------- ---------- 201 250 ENSTTRP00000001118/1-1307 ---------- ---------- ---DSGKRKK GLEMDPIDCT PPEYILPGSR bmy_00193T0/1-1249 GGKQSWRHPD QGHLSWGGTS GPSDSGKRKK GLEMDPIDCT PPEYILPGSR ENSP00000458986/1-1309 ---------- ---------- ---DSGKRKK GLEMDPIDCT PPEYILPGSR ENSBTAP00000015643/1-1311 ---------- ---------- ---DSGKRKK GLEMDPIDCT PPEYILPGSR 251 300 ENSTTRP00000001118/1-1307 ERPLCPLQPQ NRDWK----- ---------- ---------- -PLQCLKVLT bmy_00193T0/1-1249 ERPLCPLQPQ NRDWKVGAGL FWGRGSPHQE AWPTQAWPFL QPLQCLKVLT ENSP00000458986/1-1309 ERPLCPLQPQ NRDWK----- ---------- ---------- -PLQCLKVLT ENSBTAP00000015643/1-1311 ERPLCPLQPQ NRDWK----- ---------- ---------- -PLQCLKVLT 301 350 ENSTTRP00000001118/1-1307 MSGWNPPPGN RKMHGDLMYL FVITAEDRQV SITASTRXXX XXXXXXXXXX bmy_00193T0/1-1249 MSGWNPPPGN RKMHGDLMYL FVITAEDRQV SITASTR-GF YLNH------ ENSP00000458986/1-1309 MSGWNPPPGN RKMHGDLMYL FVITAEDRQV SITASTR-GF YLNQSTAYHF ENSBTAP00000015643/1-1311 MSGWNPPPGN RRMHGDLMYL FVITAEDRQV SITASTR-GF YLNQSTAYHF 351 400 ENSTTRP00000001118/1-1307 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXVQRH PFERIATPFQ bmy_00193T0/1-1249 ---------- ---------- ---------- ---------- ---------- ENSP00000458986/1-1309 NPKPASPRFL SHSLVELLNQ ISPTFKKNFA VLQKKRVQRH PFERIATPFQ ENSBTAP00000015643/1-1311 NPKPASPRFL SHSLVELLNQ ISPTFKKNFA ALQKKRVQRH PFERIATPFQ 401 450 ENSTTRP00000001118/1-1307 VYSWTAPQAE HAMDCVRAED AYTSRLGYEE HIPGQTRDWN EELQTTRELP bmy_00193T0/1-1249 ---------- ---------- ---------- ---------- ---------- ENSP00000458986/1-1309 VYSWTAPQAE HAMDCVRAED AYTSRLGYEE HIPGQTRDWN EELQTTRELP ENSBTAP00000015643/1-1311 VYSWTAPQAE HAMDCVRAED AYTSRLGYEE HIPGQTRDWN EELQTTRELP 451 500 ENSTTRP00000001118/1-1307 RKNLPERLLR ERAIFKVHSD FTAAATRGAM AVIDGNVMAI NPSEETKMQM bmy_00193T0/1-1249 ---------- ---------D FTAAATRGAM AVIDGNVMAI NPSEDTKMQM ENSP00000458986/1-1309 RKNLPERLLR ERAIFKVHSD FTAAATRGAM AVIDGNVMAI NPSEETKMQM ENSBTAP00000015643/1-1311 RKNLPERLLR ERAIFKVHSD FTAAATRGAM AVIDGNVMAI NPSEETKMQM 501 550 ENSTTRP00000001118/1-1307 FIWNNIFFSL GFDVRDHYKD FGGDVAAYVA PTNDLNGVRT YNAVDVEGLY bmy_00193T0/1-1249 FIWNNIFFSL GFDVRDHYKD FGGDVAAYVA PTNDLNGVRT YNAVDVEGLY ENSP00000458986/1-1309 FIWNNIFFSL GFDVRDHYKD FGGDVAAYVA PTNDLNGVRT YNAVDVEGLY ENSBTAP00000015643/1-1311 FIWNNIFFSL GFDVRDHYKD FGGDVAAYVA PTNDLNGVRT YNAVDVEGLY 551 600 ENSTTRP00000001118/1-1307 TLGTVVVDYR GYRVTAQSII PGILERDQEQ SVIYGSIDFG KTVVSHPRYL bmy_00193T0/1-1249 TLGTVVVDYR GYRVTAQSII PGILERDQEQ SVVYGSIDFG KTVVSHPRYL ENSP00000458986/1-1309 TLGTVVVDYR GYRVTAQSII PGILERDQEQ SVIYGSIDFG KTVVSHPRYL ENSBTAP00000015643/1-1311 TLGTVVVDYR GYRVTAQSII PGILERDQEQ SVIYGSIDFG KTVVSHPRYL 601 650 ENSTTRP00000001118/1-1307 ELLERTSRPL KILRHRVLND RDEEVELCSS VECKGIIGND GRHYILDLLR bmy_00193T0/1-1249 ELLERTSRPL KILRHQVLND RDEEVELCSS VECKGIIGND GRHYILDLLR ENSP00000458986/1-1309 ELLERTSRPL KILRHQVLND RDEEVELCSS VECKGIIGND GRHYILDLLR ENSBTAP00000015643/1-1311 ELLERTSRPL KILRHRVLND RDEEVELCSS VECKGIIGND GRHYILDLLR 651 700 ENSTTRP00000001118/1-1307 TFPPDLNFLP VPGEVLPEEC TRAGFPRAHR HKLCCLRQEL VDAFVEHRYL bmy_00193T0/1-1249 TFPPDLNFLP VPGEVLPEEC TRAGFPRAHR HKLCCLRQEL VDAFVEHRYL ENSP00000458986/1-1309 TFPPDLNFLP VPGEELPEEC ARAGFPRAHR HKLCCLRQEL VDAFVEHRYL ENSBTAP00000015643/1-1311 TFPPDLNFLP VPGEALPEEC ARAGFPRAHR HKLCCLRQEL VDAFVEHRYL 701 750 ENSTTRP00000001118/1-1307 LFMKLAALQL MQQKASKMET APSLENGDPP SSESKPEDPP APEVGSEEEG bmy_00193T0/1-1249 LFMKLAALQL MQQKASKMET PPSLENGDPP SSESKPKDPP APEVGSEEEG ENSP00000458986/1-1309 LFMKLAALQL MQQNASQLET PSSLENGGPS SLESKSEDPP GQEAGSEEEG ENSBTAP00000015643/1-1311 LFMKLAALQL MQQKASKMES PTSLENGDGL SSESKPDAPP APEAGGEEEG 751 800 ENSTTRP00000001118/1-1307 SSASGLAKVK ELAETIASDD G--------- ---------- ---------- bmy_00193T0/1-1249 SSASGLAKVK ELAETIASDD GTGGAAVDAR GAQARGGSAA APPEREWGYL ENSP00000458986/1-1309 SSASGLAKVK ELAETIAADD G--------- ---------- ---------- ENSBTAP00000015643/1-1311 SSASGLATVK ELAETVASDD G--------- ---------- ---------- 801 850 ENSTTRP00000001118/1-1307 ------T-DP RSREVIRNAC KAVGSISSTA FDVRFNPDIF SPGEVRFPES bmy_00193T0/1-1249 LMGRVSTADP RSREVIRNAC KAVGSISSTA FDVRFNPDIF SPG-VRFPES ENSP00000458986/1-1309 ------T-DP RSREVIRNAC KAVGSISSTA FDIRFNPDIF SPG-VRFPES ENSBTAP00000015643/1-1311 ------TADP RGREVIRNAC KAVGSISSTA FDVRFNPDIF SPG-VRFPES 851 900 ENSTTRP00000001118/1-1307 CQEEVRDQKQ LLKDAAAFLL SCQIPGLVKD FADHAVLPMD GATLAEVMRQ bmy_00193T0/1-1249 CQEEVRNQKQ LLKDAAAFLL SCQIPGLVKD FADHAVLPMD GATLAEVMRQ ENSP00000458986/1-1309 CQDEVRDQKQ LLKDAAAFLL SCQIPGLVKD CMEHAVLPVD GATLAEVMRQ ENSBTAP00000015643/1-1311 CQEEVRDQKQ LLKDAAAFLL SCQIPGLVKD FTDHAVLPMD GATLAEVMRQ 901 950 ENSTTRP00000001118/1-1307 RGINMRYLGK VLDLVVRSPA RDQLDHIYKI GIGELITRSA KHIFKTYLQG bmy_00193T0/1-1249 RGINMRYLGK VLDLVLRSPA RDQLDHIYKI GIGELITRSA KHIFKTYLQG ENSP00000458986/1-1309 RGINMRYLGK VLELVLRSPA RHQLDHVFKI GIGELITRSA KHIFKTYLQG ENSBTAP00000015643/1-1311 RGINMRYLGK VLDLVMRSPA RDQLDHIYKI GIGELITRSA KHIFKTYLQG 951 1000 ENSTTRP00000001118/1-1307 VELSGLSAAI SHFLNCFLSS YPNPVAHLPA DELVSKKRNR RRR-RPPGAA bmy_00193T0/1-1249 VELSGLSAAI SHFLNCFLSS YPNPVAHLPA DELVSKKRNR RRRNRPPGAA ENSP00000458986/1-1309 VELSGLSAAI SHFLNCFLSS YPNPVAHLPA DELVSKKRNK RRKNRPPGAA ENSBTAP00000015643/1-1311 VELSGLSAAI SHFLNCFLSS YPNPVAHLPA DELISKKRNR RRRNRPPGAA 1001 1050 ENSTTRP00000001118/1-1307 DNTAWAVMTP QELWKNICQE AKNYFDFSLE CETVDQAVET YGLQKITLLR bmy_00193T0/1-1249 DNTAWAVMTP QELWKNICQE AKNYFDFSLE CETVDQAVET YGLQKITLLR ENSP00000458986/1-1309 DNTAWAVMTP QELWKNICQE AKNYFDFDLE CETVDQAVET YGLQKITLLR ENSBTAP00000015643/1-1311 DNTAWAVMTP QELWKNICQE AKNYFDFSLE CETVDQAVET YGLQKITLLR 1051 1100 ENSTTRP00000001118/1-1307 EISLKTGIQI LLKEYSFDSR HKPAFTEEDV LNIFPVVKHV NPKASDAFHF bmy_00193T0/1-1249 EISLKTGIQI LLKEYSFDSR HKPAFTEEDV LNIFPVVKHV NPKASDAFHF ENSP00000458986/1-1309 EISLKTGIQV LLKEYSFDSR HKPAFTEEDV LNIFPVVKHV NPKASDAFHF ENSBTAP00000015643/1-1311 EISLKTGIQI LLKEYSFDSR HKPAFTEEDV LNIFPVVKHV NPKASDAFHF 1101 1150 ENSTTRP00000001118/1-1307 FQSGQAKVQQ GFLKEGCELI NEALNLFNNV YGAMHVEICA CLRLLARLHY bmy_00193T0/1-1249 FQSGQAKVQQ GFLKEGCELI NEALNLFNNV YGAMHVEICA CLRLLARLHY ENSP00000458986/1-1309 FQSGQAKVQQ GFLKEGCELI NEALNLFNNV YGAMHVETCA CLRLLARLHY ENSBTAP00000015643/1-1311 FQSGQAKVQQ GFLKEGCELI NEALNLFNNV YGAMHVEICA CLRLLARLHY 1151 1200 ENSTTRP00000001118/1-1307 IMGDYAEALS NQQKAVLMSE RVMGIEHPNT IQEYMHLALY CFASSQLSTA bmy_00193T0/1-1249 IMGDYAEALS NQQKAVLMSE RVMGIEHPNT IQEYMHLALY CFASSQLSTA ENSP00000458986/1-1309 IMGDYAEALS NQQKAVLMSE RVMGTEHPNT IQEYMHLALY CFASSQLSTA ENSBTAP00000015643/1-1311 IMGDYAEALS NQQKAVLMSE RVMGIEHPNT IQEYMHLALY CFASSQLSTA 1201 1250 ENSTTRP00000001118/1-1307 LSLLYRARYL TLLVFGEDHP EMALLDNNIG LVLHGVMECD LSLRFLENAL bmy_00193T0/1-1249 LSLLYRARYL TLLVFGEDHP EMALLDNNIG LVLHGVMECD LSLRFLENAL ENSP00000458986/1-1309 LSLLYRARYL MLLVFGEDHP EMALLDNNIG LVLHGVMEYD LSLRFLENAL ENSBTAP00000015643/1-1311 LSLLYRARYL TLLVFGEDHP EMALLDNNIG LVLHGVMEYD LSLRFLENAL 1251 1300 ENSTTRP00000001118/1-1307 AVSTKYHGPK SLKVALXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXLG bmy_00193T0/1-1249 SVSTKYHGPK SLKVALSHHL VARVYESKAE FRSALQHEKE GYTIYKTQLG ENSP00000458986/1-1309 AVSTKYHGPK ALKVALSHHL VARVYESKAE FRSALQHEKE GYTIYKTQLG ENSBTAP00000015643/1-1311 AVSTKYHGPK SLKVALSHHL VARVYESKAE FRSALQHEKE GYTIYKTQLG 1301 1350 ENSTTRP00000001118/1-1307 E-HEKTKESS EYLKC-TQQA VA-QRTMNEI YRNGSSANIP PLK------- bmy_00193T0/1-1249 EDHEKTKESS EYLKCLTQQA VALQRTMNEI YRNGSSANIP PLKVGPRAGL ENSP00000458986/1-1309 EDHEKTKESS EYLKCLTQQA VALQRTMNEI YRNGSSANIP PLK------- ENSBTAP00000015643/1-1311 EDHEKTKESS EYLKCLTQQA VALQRTMNEI YRNGSSANIP PLK------- 1351 1400 ENSTTRP00000001118/1-1307 ---------- ---------- FTAPSMASVL EQLNVINGIL FIPLSQKDLE bmy_00193T0/1-1249 GGPLPGLPAP RQWLSLPAPQ FTAPSMASVL EQLNVINGIL FIPLSQKDLE ENSP00000458986/1-1309 ---------- ---------- FTAPSMASVL EQLNVINGIL FIPLSQKDLE ENSBTAP00000015643/1-1311 ---------- ---------- FTAPSMASVL EQLNVINGIL FIPLSQKDLE 1401 1450 ENSTTRP00000001118/1-1307 NLKAEVARRH QLQEASGNRD KAEEPMATEP EPAGASEDAA SQPPAAKDPP bmy_00193T0/1-1249 NLKAEVARRH QLQEASGNRD KAEEPMATEP EPAGASEDAA SQPPAAKDPP ENSP00000458986/1-1309 NLKAEVARRH QLQEASRNRD RAEEPMATEP APAGAPGDLG SQPPAAKDP- ENSBTAP00000015643/1-1311 NLKAEVARRQ QLQEASRNRD KAEEPMATEP EPVGASEDAA TQPPAAKDPS 1451 1500 ENSTTRP00000001118/1-1307 SLSLQG bmy_00193T0/1-1249 SLSLQG ENSP00000458986/1-1309 SPSVQG ENSBTAP00000015643/1-1311 SPSLQG