KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:54:56 2014 Check: 00 .. Name: ENSTTRP00000004379/1-802 Len: 922 Check: 8471 Weight: 1.00 Name: ENSP00000320324/1-919 Len: 922 Check: 3203 Weight: 1.00 Name: ENSBTAP00000015199/1-921 Len: 922 Check: 6399 Weight: 1.00 Name: bmy_14044T0/1-825 Len: 922 Check: 7611 Weight: 1.00 Name: BACU018926/1-806 Len: 922 Check: 7626 Weight: 1.00 // 1 50 ENSTTRP00000004379/1-802 ---------- ---------- ---------- ---------- ---------- ENSP00000320324/1-919 MWLAAAAPSL ARRLLFLGPP PPPLLLLVFS RSS--RRRLH SLGLAAMPEK ENSBTAP00000015199/1-921 MWLAAAAPSL ARRLLFLGPP PPPLLLLLLS RSSRRRRRLH SLGLAAMPEK bmy_14044T0/1-825 ---------- ---------- ---------- ---------- ---------- BACU018926/1-806 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000004379/1-802 ---------- ---------- ---------- ---------- ---------- ENSP00000320324/1-919 RPFERLPADV SPINYSLCLK PDLLDFTFEG KLEAAAQVRQ ATNQIVMNCA ENSBTAP00000015199/1-921 RPFERLPADV SPINYSLCLK PDLLDFTFEG KLEASAQVRQ ATNQIVMNCA bmy_14044T0/1-825 ---------- ---------- ---------- ---------- ------MNCA BACU018926/1-806 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000004379/1-802 ---------- ------IHAT GFNYQNEDEK VTLSFPSTLQ PGTGTLKIDF ENSP00000320324/1-919 DIDIITASYA PEGDEEIHAT GFNYQNEDEK VTLSFPSTLQ TGTGTLKIDF ENSBTAP00000015199/1-921 DIDIITASYV PEGDEEIHAT GFNYQNEDEK VTLSFPSTLQ PGTGTLKIDF bmy_14044T0/1-825 DIDIITASYV PEGDEEIHAT GFNYQNEDEK VTLSFPSTLQ PGTGTLKIDF BACU018926/1-806 ---------- ------IHAT GFNYQNEDEK VTLSFPSTLQ PGTGTLKIDF 151 200 ENSTTRP00000004379/1-802 VGELNDKM-G FYRSKYTTSG --VRYAAVTQ FEATDARRAF PCWDEPAIKA ENSP00000320324/1-919 VGELNDKMKG FYRSKYTTPS GEVRYAAVTQ FEATDARRAF PCWDEPAIKA ENSBTAP00000015199/1-921 VGELNDKMKG FYRSKYTTPS GEVRYAAVTQ FEATDARRAF PCWDEPAIKA bmy_14044T0/1-825 VGELNDKMKG FYRSKYTTPS GEVRYAAVTQ FEATDARRAF PCWDEPAIKA BACU018926/1-806 VGELNDKMKG FYRSKYTTPS GEVRYAAVTQ FEATDARRAF PCWDEPAIKA 201 250 ENSTTRP00000004379/1-802 TFDISLVVPK DRVALSNMXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000320324/1-919 TFDISLVVPK DRVALSNMNV IDRKPYPDDE NLVEVKFART PVMSTYLVAF ENSBTAP00000015199/1-921 TFDISLVVPK DRVALSNMNV IDRKPYPDDE NVVEVKFART PVMSTYLVAF bmy_14044T0/1-825 TFDISLVVPK DRVALSNMNV IDRKPYPDDE NVVEVKFART PVMSTYLVAF BACU018926/1-806 TFDISLVVPK DRVALSNMNV IDRKPYPDDE NVVEVKFART PVMSTYLVAF 251 300 ENSTTRP00000004379/1-802 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXVAAKT LPFYKDYFNV ENSP00000320324/1-919 VVGEYDFVET RSKDGVCVRV YTPVGKAEQG KFALEVAAKT LPFYKDYFNV ENSBTAP00000015199/1-921 VVGEYDFVET RSKDGVCVRV YTPVGKAEQG KFALEVAAKT LPFYKDYFNV bmy_14044T0/1-825 VVGEYDFVET RSKDGVCVRV YTPVGKAEQG KFALEVAAKT LPFYKDYFNV BACU018926/1-806 VVGEYDFVET RSKDGVCVRV YTPVGKAEQG KFALEVAAKT LPFYKDYFNV 301 350 ENSTTRP00000004379/1-802 PYPLPKIDLI AIADFAAGAM ENWGLVTYXX XXXXXXXXXX XXXXXXXXXX ENSP00000320324/1-919 PYPLPKIDLI AIADFAAGAM ENWGLVTYRE TALLIDPKNS CSSSRQWVAL ENSBTAP00000015199/1-921 PYPLPKIDLI AIADFAAGAM ENWGLVTYRE TALLIDPKNS CSSSRQWVAL bmy_14044T0/1-825 PYPLPKIDLI AIADFAAGAM ENWGLVTYRE TALLIDPKNS CSSSRQWVAL BACU018926/1-806 PYPLPKIDLI AIADFAAGAM ENWGLVTYRE TALLIDPKNS CSSSRQWVAL 351 400 ENSTTRP00000004379/1-802 XXXXXXXXXX XXXXXXXEWW THLWLNEGFA SWIEYLCVDH CFPEYDIWTQ ENSP00000320324/1-919 VVGHELAHQW FGNLVTMEWW THLWLNEGFA SWIEYLCVDH CFPEYDIWTQ ENSBTAP00000015199/1-921 VVGHELAHQW FGNLVTMEWW THLWLNEGFA SWIEYLCVDH CFPEYDIWTQ bmy_14044T0/1-825 VVGHELAHQW FGNLVTMEWW THLWLNEGFA SWIEYLCVDH CFPEYDIWTQ BACU018926/1-806 VVGHELAHQW FGNLVTMEWW THLWLNEGFA SWIEYLCVDH CFPEYDIWTQ 401 450 ENSTTRP00000004379/1-802 FVSADYTRAQ ELDALDNSHP IEVSVGHPSE VDEIFDAISY SKGASVIRML ENSP00000320324/1-919 FVSADYTRAQ ELDALDNSHP IEVSVGHPSE VDEIFDAISY SKGASVIRML ENSBTAP00000015199/1-921 FVSADYTRAQ ELDALDNSHP IEVSVGHPSE VDEIFDAISY SKGASVIRML bmy_14044T0/1-825 FVSADYTRAQ ELDALDNSHP IEVSVGHPSE VDEIFDAISY SKGASVIRML BACU018926/1-806 FVSADYTRAQ ELDALDNSHP IEVSVGHPSE VDEIFDAISY SKGASVIRML 451 500 ENSTTRP00000004379/1-802 HDYIGDKDFK KGMNMYLTKF QQKNAATEDL WESLENASGK PIAAVMNTWT ENSP00000320324/1-919 HDYIGDKDFK KGMNMYLTKF QQKNAATEDL WESLENASGK PIAAVMNTWT ENSBTAP00000015199/1-921 HDYIGDKDFK KGMNMYLTKF QQKNAATEDL WESLENASGK PIAAVMNTWT bmy_14044T0/1-825 HDYIGDKDFK KGMNMYLTKF QQKNAATEDL WESLENASGK PIAAVMNTWT BACU018926/1-806 HDYIGDKDFK KGMNMYLTKF QQKNAATEDL WESLENASGK PIAAVMNTWT 501 550 ENSTTRP00000004379/1-802 KQMGFPLIYV EAEQIEDDRL LRLSQRKFCA SGPYVGEDCP QWMVPITIST ENSP00000320324/1-919 KQMGFPLIYV EAEQVEDDRL LRLSQKKFCA GGSYVGEDCP QWMVPITIST ENSBTAP00000015199/1-921 KQMGFPLIYV EAEQVEDDRL LRLSQKKFCA SGPYVGEDCP QWMVPITIST bmy_14044T0/1-825 KQMGFPLIYV EAEQMEDDRL LRLSQRKFCA SGPYVGEDCP QWMVPITIST BACU018926/1-806 KQMGFPLIYV EAEQIEDDRL LRLSQRKFCA SGPYVGEDCP QWMVPITIST 551 600 ENSTTRP00000004379/1-802 SEDSSHAKMK ILMDKPEMNV VLKDVKPDQW VKLNLGTVGF YRTQYSSAML ENSP00000320324/1-919 SEDPNQAKLK ILMDKPEMNV VLKNVKPDQW VKLNLGTVGF YRTQYSSAML ENSBTAP00000015199/1-921 SEDSSHAKMK ILMDKPEMNI VLKDVKPDQW VKLNLGTVGF YRTQYSSAML bmy_14044T0/1-825 SEDSSHAKMK ILMDKPEMNV VLKDVRPDQW VKLNLGTVGF YRTQYSSAML BACU018926/1-806 SEDSSRAKMK ILMDKPEMNV VLKDVKPDQW VKLNLGTVGF YRTQYSSAML 601 650 ENSTTRP00000004379/1-802 ESLLPGIRDL SLPPVDRLGL QNDLFSLARA GIISTVEVLK VMEAFVNEPN ENSP00000320324/1-919 ESLLPGIRDL SLPPVDRLGL QNDLFSLARA GIISTVEVLK VMEAFVNEPN ENSBTAP00000015199/1-921 ESLLPGIRDL SLPPVDRLGL QNDLFSLARA GIISTVEVLK VMEAFVNEPN bmy_14044T0/1-825 ESLLPGIRDL SLPPVDRLGL QNDLFSLARA GIISTVEVLK VMEAFVNEPN BACU018926/1-806 ESLLPGIRDL SLPPVDRLGL QNDLFSLARA GIISTVEVLK VMEAFVNEPN 651 700 ENSTTRP00000004379/1-802 YTVWSDLSCN LGILSTLLSH TDFYEEIQEF VKDVFSPIGE RLGWDPKPGE ENSP00000320324/1-919 YTVWSDLSCN LGILSTLLSH TDFYEEIQEF VKDVFSPIGE RLGWDPKPGE ENSBTAP00000015199/1-921 YTVWSDLSCN LGILSTLLSH TDFYEEIQEF VKDVFSPIGE RLGWDPKPGE bmy_14044T0/1-825 YTVWSDLSCN LGILSTLLSH TDFYEEIQEF VKDVFSPIGE RLGWDPKPGE BACU018926/1-806 YTVWSDLSCN LGILSTLLSH TDFYDEIQEF VKDVFSPIGE RLGWDPKPGE 701 750 ENSTTRP00000004379/1-802 GHLDALLRGL VLGKLGKAGH KATLEEARRR FKDHVEGKQI LSADLRSPVY ENSP00000320324/1-919 GHLDALLRGL VLGKLGKAGH KATLEEARRR FKDHVEGKQI LSADLRSPVY ENSBTAP00000015199/1-921 GHLDALLRGL VLGKLGKAGH KATLEEARRR FKDHVEGKQI LSADLRSPVY bmy_14044T0/1-825 GHLDALLRGL VLGKLGKAGH KATLEEARRR FKDHVEGKQI LSADLRSPVY BACU018926/1-806 GHLDALLRGL VLGKLGKAGH KATLEEARRR FKDHVEGKQI LSADLRSPVY 751 800 ENSTTRP00000004379/1-802 LTVLKHGDGT TLDIMLKLHK QADMQEEKNR IERVLGATLS PELIQKVLTF ENSP00000320324/1-919 LTVLKHGDGT TLDIMLKLHK QADMQEEKNR IERVLGATLL PDLIQKVLTF ENSBTAP00000015199/1-921 LTVLKHGDGT TLDIMLKLHK QADMQEEKNR IERVLGATLS PELIQKVLTF bmy_14044T0/1-825 LTVLKHGDGT TLDIMLKLHK QADMQEEKNR IERVLGATLS PELIQKVLTF BACU018926/1-806 LTVLKHGDGT TLDIMLKLHK QADMQEEKNR IERVLGATLS PELIQKVLTF 801 850 ENSTTRP00000004379/1-802 ALSEEVRPQD TVSVIGGVAG GSKHGRKAAW KFIKDNWEEL YNRYQGGFLI ENSP00000320324/1-919 ALSEEVRPQD TVSVIGGVAG GSKHGRKAAW KFIKDNWEEL YNRYQGGFLI ENSBTAP00000015199/1-921 ALSEEVRPQD TVSVIGGVAG GSKHGRKAAW KFIKDNWEEL YNRYQGGFLI bmy_14044T0/1-825 ALSEEVRPQD TVSVIGGVAG GSKHGRKAAW KFIKDNWEEL YNRYQGGFLI BACU018926/1-806 ALSEEVRPQD TVSVIGGVAG GSKHGRKAAW KFIKDNWEEL YNRYQGGFLI 851 900 ENSTTRP00000004379/1-802 SRLIKLSVEG FAVDKMAGEV KAFFESHPAP SAERTIQQCC ENI-LLNAAW ENSP00000320324/1-919 SRLIKLSVEG FAVDKMAGEV KAFFESHPAP SAERTIQQCC ENI-LLNAAW ENSBTAP00000015199/1-921 SRLIKLSVEG FAVDKMAGEV KAFFESHPAP SAERTIQQCC ENI-LLNAAW bmy_14044T0/1-825 SRLIKLSVEG FAVDKMAGEV KAFFESHPAP SAERTIQQCC ENI-LLNAAW BACU018926/1-806 SRLIKLSVEG FAVDKMAGEV KAFFESHPAP SAERTIQQCC ENIXLLNAAW 901 950 ENSTTRP00000004379/1-802 LKRDAESIHQ YLLQRKASPP TA ENSP00000320324/1-919 LKRDAESIHQ YLLQRKASPP TV ENSBTAP00000015199/1-921 LKRDAESIHQ YLLQRKASPP TA bmy_14044T0/1-825 LKRDAESIHQ YLLQRKASPP TA BACU018926/1-806 LKRDAESIHQ YLLQRKASPP TA