KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:53:19 2014 Check: 00 .. Name: ENSP00000297788/1-1154 Len: 1244 Check: 9103 Weight: 1.00 Name: ENSBTAP00000014612/1-1151 Len: 1244 Check: 3065 Weight: 1.00 Name: ENSTTRP00000013852/1-1209 Len: 1244 Check: 7519 Weight: 1.00 Name: bmy_14119T0/1-1184 Len: 1244 Check: 1879 Weight: 1.00 Name: BACU006816/1-972 Len: 1244 Check: 449 Weight: 1.00 // 1 50 ENSP00000297788/1-1154 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014612/1-1151 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013852/1-1209 RGSEVVPLGK PGSKDRWVPS PRQEIPNAPH PTIPPLFLLT GPTVTTSGSY bmy_14119T0/1-1184 ---------- ---------- --LRPSRPYH PTIPPLSLLT GPTVTTSGSY BACU006816/1-972 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000297788/1-1154 ---------- ---------- -MQAMEGEVL LPALYEEEEE EEEEEEEVEE ENSBTAP00000014612/1-1151 ---------- ---------- -MQAMEGEVL LPALYEEEEE EEEEEEEMEE ENSTTRP00000013852/1-1209 EVSEGCERKK GQRWGSLERR GMQAMEGEVL LPALYEGEEE ERGEVER--- bmy_14119T0/1-1184 EVSEGCERKK GQRWGSLERR GMQAMEGEVL LPALYEEEEE EEEEEEEVEE BACU006816/1-972 ---------- ---------- -MQAMEGEVL LPALYEEEEE EEEEEEEVEE 101 150 ENSP00000297788/1-1154 EEEQVQKGGS VGSLSVNKHR GLSLTETELE ELRAQVLQLV AELEETRELA ENSBTAP00000014612/1-1151 EEDSGQKGGN AGSLSMSKHR GLSLTETELE ELRAQVLRLV AELEETRELA ENSTTRP00000013852/1-1209 --DSVQ--GG SGSLSVGKHR GLXXXXXXXE ELRAQVLQLV AELDDSRELA bmy_14119T0/1-1184 EDDQVQKGGS VGSLSVGKHR GLSLTETELE ELRAQVLQLV AELEETRELA BACU006816/1-972 EDDQVQKGGS VGSLSVGKHR GLSLTETELE ELRAQVLQLV AELEETRELA 151 200 ENSP00000297788/1-1154 GQHEDDSLEL QGLLEDERLA SAQQAEVFTK QIQQLQGELR SLREEISLLE ENSBTAP00000014612/1-1151 GQHEDDSLEL QGLLEDERMA SAQQAEVFTK QIQQLQGELR SLREEISLLE ENSTTRP00000013852/1-1209 GQHEDDSLDL QGLLEDERLA SAQQAEVFTK QIQQLQGELR SLREEISLLE bmy_14119T0/1-1184 GQHEDDSLEL QGLLEDERLA SAQQAEVFTK QIQQLQGELR SLREEISLLE BACU006816/1-972 GQHEDDSLEL QGLLEDERLA SAQQAEVFTK QIQQLQGELR SLREEISLLE 201 250 ENSP00000297788/1-1154 HEKESELKEI EQELHLAQAE IQSLRQAAED SATEHESDIA SLQEDLCRMQ ENSBTAP00000014612/1-1151 REKECELKEI EQELHLARAE IQTLRQAAED SATEHDSDIA SLQEDICRMQ ENSTTRP00000013852/1-1209 HEKESELQEI EQELHLAQAE IQNLRQAAED SATEHENDIA SLQEDLCRMQ bmy_14119T0/1-1184 REKECELKEI EQELHLAQAE IQNLRQAAED SATEHESDIA SLQEDLCRMQ BACU006816/1-972 REKECELKEI EQELHLAQAE IQNLRQAAED SATEHESDIA SLQEDLCRMQ 251 300 ENSP00000297788/1-1154 NELEDMERIR GDYEMEIASL RAEMEMKSSE PSGSLGLSDY SGLQEELQEL ENSBTAP00000014612/1-1151 NELEDMDRIR GEYEMEITSL RAEIDMKNSD PSNSFSLSDF SEMQEELQQL ENSTTRP00000013852/1-1209 NELEDMERIR GEYEMEITSL RAEIEMKNSD VSNSLSLSDF SEMQEELQQL bmy_14119T0/1-1184 NELEDMERIR GEYEMEITSL RAEIEMKSSD PSNSLSLSDF SEMQEELQQL BACU006816/1-972 NELEDMERIR GEYEMEITSL RAEIEMKSSD PSNSLSLSDF SEMQEELQQL 301 350 ENSP00000297788/1-1154 RERYHFLNEE YRALQESNSS LTGQLADLES ERTQRATERW LQSQTL-SMT ENSBTAP00000014612/1-1151 RERYHFLNEE YRALQESNSS LTGQLADLES ERTRRATERW LESQTLRTMR ENSTTRP00000013852/1-1209 RDRYHFLNEE YQVLRENNSS LTGQLADLES EXXXXXXXXX XXXXXX-XXX bmy_14119T0/1-1184 RDRCRFLNEE YQALQESNSS LTGQLADLES ERTRRATERW LEYQALQSMK BACU006816/1-972 RDRCRFLNKE YQALQESNSS LTGQLADLES ERTRRATERW LESQALRNMK 351 400 ENSP00000297788/1-1154 SAESQTSEMD FLEPDPEMQL LRQQLRDAEE QMHGMKNKCQ ELCCELEELQ ENSBTAP00000014612/1-1151 SAESQTSEED FLEPDPGMHL LRQQLLGAKE QMHDMQSKCK KLTCELQELH ENSTTRP00000013852/1-1209 XXXSQTSKED FLEPD-EMHL LRQQLLGAEE QMHDMQNKCK KLSCELQELQ bmy_14119T0/1-1184 SAESQTSEED FLEPDPEMHL LRQQLLGAEE QMRDMQNKCE KLSCELQELQ BACU006816/1-972 SAESQTSEED FLEPDPEMHL LRQQLLGAEE QMRDMQNKCE KLSCELQELQ 401 450 ENSP00000297788/1-1154 HHRQVSEEEQ RRLQRELKCA QNEVLRFQTS HSVTQNEELK SRLCTLQKKY ENSBTAP00000014612/1-1151 HHRRTSEEEQ RRLQRELKCA QNEVLRFQTS HSVTQNEELK TRLCALQQKY ENSTTRP00000013852/1-1209 HHRRTSEEEQ RRLQRELKCA QDEVLRFQTS HSVTQGEELR TRLCALQQKY bmy_14119T0/1-1184 HHRRTSEEEQ RRLQRELKCA QNEVLRFQTS HSVTQSEELR TRLCALQEKY BACU006816/1-972 HHRRTSEEEQ RRLQRELKCA QNEVLRFQTS HSVTQ----- ---------- 451 500 ENSP00000297788/1-1154 DTSQDEQNEL LKMQLQLQTE LRQLKVMKST LVENQSEKEL LCRLQKLHLQ ENSBTAP00000014612/1-1151 DASQDEQSEL LKVQLQLQAE LRQLKVMKST -VESQSEKEL QCQLQKLQLQ ENSTTRP00000013852/1-1209 DASQDEQNEL LKVQLQLEAE LQQLKDMKPT VVESQSEKEL QCQLQKLQLQ bmy_14119T0/1-1184 DASQGERNEL LKVQLQLQAE LRQLKVMKPA VIESQSEKEL QCRLQKLQLR BACU006816/1-972 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000297788/1-1154 HQNVTCEKEK LLERQQQLQE ELQCHEAELQ HLRDTVASFK ESNEKDTETH ENSBTAP00000014612/1-1151 CQSISCEKDK LLDVQQHLRD TLRCHEAEVQ HLRGVVTTYQ ESSEKSAEVH ENSTTRP00000013852/1-1209 YQSIMCEMDE LLAVQQQLQD SLRCHEAE-- QLKGIASF-- ESREKNAEMH bmy_14119T0/1-1184 HQNITCEKDK LLAVQQQLRD SLRCHEAEVQ HLKGIVASFQ ESREKNAEMH BACU006816/1-972 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000297788/1-1154 AQLQEMKQLY QASKDELERQ KHMYDQLEQD LLLCQLELKE LKASHPIPED ENSBTAP00000014612/1-1151 AQLQETKRLY QCSQETLDRQ KHMYDQLEQE FLLCQQELQQ LRSTQSILED ENSTTRP00000013852/1-1209 AQLQEMKRLY QTSKDALERQ KHMYDQLEQD FLLCRQELQQ LKTTQSIPED bmy_14119T0/1-1184 AQLQEMKRLY QTSKDALEQQ KHVYDQLEQD FVLCRQELQQ LQTTQSIPED BACU006816/1-972 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000297788/1-1154 KGKCANKCDT LLSRLTELQE KYKASQKEMG QLQMEQCELL EDQRRMQEEQ ENSBTAP00000014612/1-1151 KGKCANKCDA LLFRLTELQE TYKASQKEMA QLQMEQCELL EEQRRMQEEQ ENSTTRP00000013852/1-1209 KGKCADKCDA LLFRLTELQE RYKASQKDMA QLQMGQCELL ERQRRMQEAQ bmy_14119T0/1-1184 RGKCADECDA LLFRLTELQE RYKANQKEMA QLQMEQCELL ERQRRMQEEQ BACU006816/1-972 -------CDA LLFRLTELQE RYKASQKEMA QLQMEQCELL ERQRRMQEEQ 651 700 ENSP00000297788/1-1154 GQLQEELHRL TLPLPKSGLL LKSQELLTKL EDLCELQLLY QGMQEEQKKL ENSBTAP00000014612/1-1151 GQLQEELHRL TFPLPKSGLF HKSQELLTKL QDLCEVQMLY QGMQEEQKKL ENSTTRP00000013852/1-1209 GQLHEELHRL TFPLPRSGLF HKSQELLTKL QDLGELQMVY QGMQEKQKKL bmy_14119T0/1-1184 GQLHEELHRL TFPLPRSGLF HKSQELLTKL QDLCELQMLY QGMQEEQKKL BACU006816/1-972 GQLHEELHRL TFPLPRSGLF HKSQELLTKL QDLCELQMLY QGMQEEQKKL 701 750 ENSP00000297788/1-1154 IQNQDCVLKE QLEIHEELRR FKESHFQEVL ENPDDSKLAK SSKCNRNKQS ENSBTAP00000014612/1-1151 IQNQENIVKE QLELQGALHR FKESSFREVL ENPEDPKWPK SSKCGHNK-S ENSTTRP00000013852/1-1209 IQNQESVLKE QLELHGALQR FKESDFREVL ENPKDSKWPK SSKCGHNKQS bmy_14119T0/1-1184 IQNQESMLKE QLELHGALQR FKESDFREVL ENPKDSKRPK SSKCGHNK-S BACU006816/1-972 IQNQESMLKE QLELHGALQR FKESDFREVL ENPKDSKWPK SSKCGHNK-S 751 800 ENSP00000297788/1-1154 KLLMEQMQAL QVMYDAGQAK QELLQQEQGR LLEERKRLQA DLQLCLEEMQ ENSBTAP00000014612/1-1151 KMIIAQMQAL QELYEASETE QELLQQEQER LLEERKRLQA DLQLCLEEMQ ENSTTRP00000013852/1-1209 KVIIAQMQSL QELYEASEAE QELRQQEQER LLEERKRLQA DLQLCLEEMH bmy_14119T0/1-1184 KMIIAQMQAL QELYEASQTE QELLQQEQGR LLEERKRLQA DLQLCLEEMQ BACU006816/1-972 KMIIAQMQAL QELYEASQTE QELLQQEQER LLEERKRLQA DLQLCLEEMQ 801 850 ENSP00000297788/1-1154 LLQVQSPSIK MSLESYGKSY GSMVPSNENC RKTYDTTVDD NESYYKSYTS ENSBTAP00000014612/1-1151 LLQDQSPSIK MSLDSYRKSY SSTTTSNENC HK--SCNIND DEGYQKSYSS ENSTTRP00000013852/1-1209 MLQVQSPSVK MSLESYKKSY GTTDTSNENC RR--DCNIDD NESCHESYNS bmy_14119T0/1-1184 MLQVQSPSVK VSLESYKKSY GSTTTSNEDC RR--GCNIDD NESYHKSYNS BACU006816/1-972 MLQVQSPSVK VSLESYKKSY GSTTTSNEDC RR--GCNIDD NESYHKSYNS 851 900 ENSP00000297788/1-1154 TQTSSKSFLK SYDSSTSASE AYGKSYC-TT SNSSITYKKS YGSTSSSDTC ENSBTAP00000014612/1-1151 SQASEESLLK SYESSTSASE SYQRSYLSSS SSSSDTYKRS YGSSSSSDTC ENSTTRP00000013852/1-1209 SQASEESVLQ SYDRSTSTGE SCGRSY--RS SSSSIAYKRS YGTSRSSDTC bmy_14119T0/1-1184 SQASEGSLLK SYDSSTSTRE SYGRSYCSSS SSSSIACKRS YGTSSSSDTC BACU006816/1-972 SQASEGSLLK SCDSSTSTRE FYGRSY---- RSSSIACKRS YGSSSSSDTC 901 950 ENSP00000297788/1-1154 QKSFVSSCTD EEPAEPEDME RFEEMVVKVL IKLQAVQAMY QISQEEHSQL ENSBTAP00000014612/1-1151 HKSYVSSSMD DELAKPGDVE HLEDVVAKVL IKLQGVQAMY QLSQEEHTLL ENSTTRP00000013852/1-1209 HKSYVSSSMD GELADPEDME RFEDTVAKVL IKLQGVQAMY QLSQEEHDLL bmy_14119T0/1-1184 HKSYVSSSMD DELAEPEDME RFEDTVAKVL IKLQGVQAMY QLSQEEHDLL BACU006816/1-972 HKSYVSSSMD DELAEPEDME RFEDTVAKVL IKLQGVQAMY QLSQEEHDLL 951 1000 ENSP00000297788/1-1154 QEQMEKLLAK QKDLKEELDA CEREFKECME CLEKPMAPQN --DKNEIKEL ENSBTAP00000014612/1-1151 QQRMKKLLDE QKELKEELDA CEKEFKECME GLEKPVASQN DKDKNEIKEL ENSTTRP00000013852/1-1209 XXXXXXXLDK QKGPKEELDA CEKEFKERVE RLEKTVASQN --EEHEIKEL bmy_14119T0/1-1184 QQRMRNLLDK QKGLKEELDA CEKEFKECVE CLEKTAASQN --EEHEIKEL BACU006816/1-972 QQRMRNLLDK QKGLKEELDA CEKEFKECVE CLEKTAASQN --EEHEIKEL 1001 1050 ENSP00000297788/1-1154 QTKLRELQLQ YQASMDEQGR LLVVQEQLEG QLQCCQEELR QLREKRPSVV ENSBTAP00000014612/1-1151 QAKLRELQLQ YQASMDEQGR LLAVQEQLEG QLQCCQEELR QLKEKKSSVT ENSTTRP00000013852/1-1209 QAKLRELQLQ YQASVDERGR LLAMQEQLEG QLQCCQEELH QLKEKRSSVT bmy_14119T0/1-1184 QAKLRELQLQ YQASVDEQGR LLAVQEQLEG QLQCCQEELH QLKEERSSVT BACU006816/1-972 QAKLRELQLQ YQASVDEQGR LLAVQEQLEG QLQCCQEELH QLKEERSSVT 1051 1100 ENSP00000297788/1-1154 KEARGKNANK NMNKNANGVK MKKVTKPCSD TSESDLETRK SLEVVLYYKA ENSBTAP00000014612/1-1151 KEIRGKNGNK NMNKNANGVK NKKVAKPSLE STESGLETTK NLEVVLYYKA ENSTTRP00000013852/1-1209 KETKGTNGNK NVNKNANGVK SKKVAKPSLE SSEVSCETRK SLEVVLYYKA bmy_14119T0/1-1184 KETKGTNGNQ NMNENANGVK SKNVAKPSLE SSEVSFETRK SLEVVLYYKA BACU006816/1-972 KETKGTNGNQ NMNENASGVK SKNVAKPSLE SSEVSFETRK SLEVVLYYQA 1101 1150 ENSP00000297788/1-1154 SQRKLDGLAK EEEKKEEM-- -EEEKKQVKE EAKEQCGDEL VAEPADPEEA ENSBTAP00000014612/1-1151 SHTSLDGPTK EEKKEETE-- -EEKEEEVKE GTKEESQDGM VSEPSGPKEV ENSTTRP00000013852/1-1209 SHVALDDQTK EEIEEETKEA IEDKTEAIED ETKE-SWDEL VSEPSGPREV bmy_14119T0/1-1184 SHMALDDQTK EETEEETK-- -----EAIED ETKE-SWDEL VSEPSGPREV BACU006816/1-972 SHMALDDQTK EEIEEETK-- -----EAIED ETKE-SWDEL VSEPSGPREV 1151 1200 ENSP00000297788/1-1154 KSTEDQEENE EDKEEEEKEE DSEEEEDDAD SSLESPEENN PLRLSESKKS ENSBTAP00000014612/1-1151 KFKDDQEEKD EEFPSQEGKD EDDEEEDDDE ---EASEESN PLKLSESKKS ENSTTRP00000013852/1-1209 KFKEDQEERY EEFHSQEGKE EGNDQGEEED ---EASEGSN PLKPSESKKP bmy_14119T0/1-1184 KFKEDQEERY EEFHSQEGKE EEDNQEEEEN ---EASEGSN PLKLSESKKV BACU006816/1-972 KFKEDQEEAY EEFHSQEGKE EEDNQEEEES ---EASEGSN PLKLSESKKN 1201 1250 ENSP00000297788/1-1154 SPTPNPPIFS LPLVGLVVI- ------SALL WCW--WAETS S--- ENSBTAP00000014612/1-1151 SPAPDPPIFS LPLVGLVVI- ------SALL WCW--WAETS S--- ENSTTRP00000013852/1-1209 SPAPNPPIFS LPLVGLVVI- ------SALL WCW--WAETS S--- bmy_14119T0/1-1184 TTAK------ ---------- ------GRIM WEMGSWAQVP SVRV BACU006816/1-972 MFGMWKPMVF LALAAVALYV LPNMRPQETE FCL--ME--- ----