KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:53:09 2014 Check: 00 .. Name: BACU015772/1-1005 Len: 1120 Check: 9296 Weight: 1.00 Name: ENSP00000332034/1-944 Len: 1120 Check: 7963 Weight: 1.00 Name: ENSBTAP00000014539/1-915 Len: 1120 Check: 7324 Weight: 1.00 Name: bmy_14064T0/1-689 Len: 1120 Check: 7832 Weight: 1.00 Name: ENSTTRP00000014733/1-934 Len: 1120 Check: 648 Weight: 1.00 // 1 50 BACU015772/1-1005 ---------- ---------- ---------- ---------- ---------- ENSP00000332034/1-944 MDKKSFEMVL DEIRKAVLTE YKLKAIEYVH GYFSSEQVVD LLRYFSWAEP ENSBTAP00000014539/1-915 MDKKSFEMVL DEIRKAVLTE YKLKAIEYVH GYFSSEQVVD LLRYFSWAEP bmy_14064T0/1-689 MDKKSFETVL DEIRKAVLTE YKLKAIEYVH GYFSSEQVVD LLRYFSWAEP ENSTTRP00000014733/1-934 MDKKSFETVL DEIRKAVLTE YKLKAIEYVH GYFSSEQVVD LLRYFSWAEP 51 100 BACU015772/1-1005 ---------- -MVAVHPAEV VNILNCFTFS KDKLVALELL ASNIVDAQNS ENSP00000332034/1-944 QLKAMKALQH KMVAVQPTEV VNILNCFTFS KDKLVALELL ASNIIDAQNS ENSBTAP00000014539/1-915 QLKAMKALQH KMVAVHPGEV VNILNCFTFS KDKLVALELL ASNIVDAQNS bmy_14064T0/1-689 QLKAMKALQH KMVAVHPAEV VNILNCFTFS KDKLVALELL ASNIVDAQNS ENSTTRP00000014733/1-934 QLKAMKALQH KMVAVHPAEV VNILNCFTFS KDKLVALELL ASNIVDAQNS 101 150 BACU015772/1-1005 RPIEDLFRIN MSEKKRCKRV LEQAFKAGCK APHAMISSCG TIPGNPYPKG ENSP00000332034/1-944 RPIEDLFRVN MSEKKRCKRI LEQAFKGGCK APHAMISSCG TIPGNPYPKG ENSBTAP00000014539/1-915 RPIEDLFRIN MSEKKRCKRV LEQAFKGGCK APHAMISSCG TIPGNPYPKG bmy_14064T0/1-689 RPIEDLFRIN MSEKKRCKRV LEQAFKAGCK APHAMISSCG TIPGNPYPKG ENSTTRP00000014733/1-934 RPIEDLFRIN MSEKKRCKRV LEQAFKAGCK APHAMISSCG TIPGNPYPKG 151 200 BACU015772/1-1005 KPSRINGIFP GTPLKKDGEE CTNEGKGIAA RILGPSKPPP STYNPHKPVP ENSP00000332034/1-944 RPSRINGIFP GTPLKKDGEE CTNEGKGIAA RILGPSKPPP STYNPHKPVP ENSBTAP00000014539/1-915 KPSRINGIFP GTPLKKDGED CSNEGKGIAA RILGPSKPPP STYNPHKPVP bmy_14064T0/1-689 KPSRINGIFP GTPLKKDGEE CTNEGKGIAA RILGPSKPPP STYNPHKPVP ENSTTRP00000014733/1-934 KPSRINGIFP GTPLKKDGEE CTNEGKGIAA RILGPSKPPP STYNPHKPVP 201 250 BACU015772/1-1005 YPIPPCRPHA TIAPSAYNNA GLVPLANVIA PGVPPPPPYT PNPVAAENED ENSP00000332034/1-944 YPIPPCRPHA TIAPSAYNNA GLVPLANVIA ---PPPPPYT PNPVGTENED ENSBTAP00000014539/1-915 YPIPPCRPHA TIAPSAYNNA GLVPLANVIA PGVPPPPPYT PNPVAAENED bmy_14064T0/1-689 YPIPPCRPHA TIAPSAYNNA GLVPLANVIA PGVPPPPPYT PNPVAAENED ENSTTRP00000014733/1-934 YPIPPCRPHA TIAPSAYNNA GLVPLANVIA PGVPPPPPYT PNPVAAENED 251 300 BACU015772/1-1005 LSNQSKPTQN P--------- -------AFS TPASQLFSPH GSNPSTPAAT ENSP00000332034/1-944 LSNPSKPIQN Q--------- -------TFS TPASQLFSPH GSNPSTPAAT ENSBTAP00000014539/1-915 LSSQSKPTQN Q--------- -------AFS TPASQLFPPH GSNPSTPAAT bmy_14064T0/1-689 LSNQSKPTQN PEKKTGHQSR KWNWKNEPFS TPASQLFSPH GSNPSTPAAT ENSTTRP00000014733/1-934 LSNQSKPTQN P--------- -------AFS APASQLFSPR GSNPSTPAAT 301 350 BACU015772/1-1005 PVPAASPVKA VNHPSAPATA ALPGADLLNA VLPVLPAQV- SAVHAPQPTT ENSP00000332034/1-944 PVPTASPVKA INHPSASAAA TVSGMNLLNT VLPVFPGQVS SAVHTPQPSI ENSBTAP00000014539/1-915 PVPTASPIKA GTHPSASATA SLPGMNLANT VLPVFPGQV- SAIHPPQPMT bmy_14064T0/1-689 PVPAASPVKA VNHPSASATA ALSGANLLNA VLPVLPGQV- SAVHAPQPTT ENSTTRP00000014733/1-934 PVPAASPVKA VNHPAASATA ALPGMNLLNT VLPVLPGQV- SAVHAPQPTT 351 400 BACU015772/1-1005 PNPTVIRTLS LLAAPVTSVH STTSAPVPSV FSGLVPLPGP SATPTPA-PQ ENSP00000332034/1-944 PNPTVIRTPS LPTAPVTSIH STTTTPVPSI FSGLVSLPGP SATPTAATPT ENSBTAP00000014539/1-915 PNPTVIRTPS LPATAVTSVH STTATPVPSV FSGLVPLPGP PTLPAPA-PQ bmy_14064T0/1-689 PNPTVIRTLS LLAAPVTSVH STTSAPVPSV FSGLVPLPGP SATPTAA-PQ ENSTTRP00000014733/1-934 PNPTVIRTLS LLAAPVTSVH STTSAPVPSV FSGHVPLPGP SATPT---PT 401 450 BACU015772/1-1005 AASTPRATPA SSETFASTSV PFTSLPFAAT SAAASASSLD SSSLSSVLAG ENSP00000332034/1-944 PGPTPRSTLG SSEAFASTSA PFTSLPFSTS SSAASTSNPN SASLSSVFAG ENSBTAP00000014539/1-915 ATAAPRATPP RAT--PASSE TFTSLPFPAP STAAATNNLN SASLSSVFAG bmy_14064T0/1-689 AASTPRATPA SSETFASTSV PFTSLPFAAT SAAASASSLD SSSLSSVLAG ENSTTRP00000014733/1-934 SGSTPRATPA SSETFASTSA PFTSLPFAAT STAASTNNLD SSSLASVFAG 451 500 BACU015772/1-1005 LPLTLTPASQ GVSNPTPSVI ACGSAPTVAC PLGVNNPLLS ALKGFLTSND ENSP00000332034/1-944 LPLPLPPTSQ GLSNPTP-VI AGGSTPSVAG PLGVNSPLLS ALKGFLTSND ENSBTAP00000014539/1-915 LPLTLTPASQ GVSNPTPSVI AGGSAPGVAC PLAVNSPLLS ALKGLLTSSD bmy_14064T0/1-689 LPLTLTPASQ GVSNPTPSVI ACGSAPTVAC PLGVNNPLLS ALKGFLTSND ENSTTRP00000014733/1-934 LPLTLTPTSQ GVSNPTPSVI ACGSAPTVAC PLGVNNPLLS ALKGFLTSND 501 550 BACU015772/1-1005 TSLINSATLP CAVTSGLASL ASLANQSSDS PAAAPNKGYG ------PQRA ENSP00000332034/1-944 TNLINSSALS SAVTSGLASL SSLTLQNSDS SASAPNKCYA PSAIPTPQRT ENSBTAP00000014539/1-915 TSLISSSALP SAVTSGLASL SSLANQGADL PGSAPNKGYG ------PPQV bmy_14064T0/1-689 TSLINSATLP CAVTSGLASL ASLTNQSSDS PAAAPNKGYG ------PQRA ENSTTRP00000014733/1-934 TNLINSSTLP CAVTSGLASL ASLTNQSSDS AAAALNKGYG ------PQRA 551 600 BACU015772/1-1005 STPGLAL--- FPGLPSPAAN -AASTPPXXX XXXXXXXXXX XXXXXXXXXX ENSP00000332034/1-944 STPGLAL--- FPGLPSPVAN -STSTPLTLP VQSPLATAAS ASTSVPVSCG ENSBTAP00000014539/1-915 PTPGLAL--- FPGLPSPVAS AAASTPPALP --TPAAPSSA SSGLAAAGCG bmy_14064T0/1-689 STPGLALDLC RPRLPP---- -----TPASP --SPAPRLRC PP---SRGC- ENSTTRP00000014733/1-934 STPGLAL--- FPGLPSPAAN -AASTPPALP --APAAAASS GP----AGCG 601 650 BACU015772/1-1005 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXX--XX XXXXXXXXXX ENSP00000332034/1-944 SSASLLRGPH PGTSDLHISS TPAATTLPVM IKTEPT--SP TPSAFKGPSH ENSBTAP00000014539/1-915 SSAAHPHGP- ---------A TPAVTTLPVV VKTEPTSPSP TPSAFKGPAP bmy_14064T0/1-689 ---------- ---------- ----SRLP-- ---------- -------PAP ENSTTRP00000014733/1-934 SSATLLHGPL ASHADAPGSS TPAATSLPVV IKTEPA--SP TPSAFRGPAP 651 700 BACU015772/1-1005 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000332034/1-944 SGNPSH---- --GTLGLSGT LGRAYTSTSV PISLSACLNP ALSGLSSLST ENSBTAP00000014539/1-915 AAAV------ --GALGLSGA LGRAYPAASV PISLPSCLNP ALPGLPGLSA bmy_14064T0/1-689 PPPRRPLP-- --SSPGSP-- ---------- ---------- ---------- ENSTTRP00000014733/1-934 PPPPTPAP-- --GALGLPGA LGRAYAAASV PVSLPSCLAP ALPGLPGLSA 701 750 BACU015772/1-1005 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000332034/1-944 PLNGSNPLSS ISLPPHGSST PIAPVFTALP SFTSLTNNFP LTGNPSLNPS ENSBTAP00000014539/1-915 PLTGSSALPA LPLAPHGSST PITPVFTALP PFTSLTSSFP LAATPALNPP bmy_14064T0/1-689 ---------- ---------P PLVPV----- ---------- ---STPLWLR ENSTTRP00000014733/1-934 TPSGSSPLPS LPLPAHGPSA PIAPVFNVLA PFTSLSSGFA QVAHTPLXXX 751 800 BACU015772/1-1005 X----XXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000332034/1-944 VSLPGSLIAT SSTAATSTSL PHPSSTAAVL SGLSASAPVS -AAPFPLNLS ENSBTAP00000014539/1-915 V----SAPAA PASTSAAPPH PGPGSAAPAL PGLSAPTPAS AAAAFPLSLP bmy_14064T0/1-689 K--------- ---------- ---------- ---------- ---------- ENSTTRP00000014733/1-934 X-XXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 801 850 BACU015772/1-1005 XXXXXXXXXX XXXXXXXRPR CPRSRGCSRP PPAPPPPRRP LPSSPGS--- ENSP00000332034/1-944 TAVPSLFSVT QGPLSSSNPS YPGFSVSNTP SVTPALPSFP GLQAPSTVAA ENSBTAP00000014539/1-915 AAVPSLFSVA QGPLPASAPS YPGFCVSSAP G-APALPAFP GLQPPAT--- bmy_14064T0/1-689 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014733/1-934 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 851 900 BACU015772/1-1005 ---------P RPLVPVSTPL WLRIIKEYER AVVLRLGRMQ ADKAKG---- ENSP00000332034/1-944 VTPLPVAATA PSPAPVLPGF ASAFSSNFNS ALVAQAGLSS GLQAAGSSVF ENSBTAP00000014539/1-915 -----GAATA PSPAPVLPGF ASAFSSNFNS ALVAQAGLSS GLQAAGSSGF bmy_14064T0/1-689 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014733/1-934 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXLSS GLQAAGSSVF 901 950 BACU015772/1-1005 PGLILVLPCI DVFVKVDLRT VTCNIPPQEI LTRDSVTTQV DGVVYYRIYS ENSP00000332034/1-944 PGL-LSLPGI PGF------- ---------- ---------- ---------- ENSBTAP00000014539/1-915 PGL-LSLPGI PGF------- ---------- ---------- ---------- bmy_14064T0/1-689 PGL-LSLPGI PGF------- ---------- ---------- ---------- ENSTTRP00000014733/1-934 PGL-LSLPGI PGF------- ---------- ---------- ---------- 951 1000 BACU015772/1-1005 AVSAVANVND VHQATFLLAQ TTLRNVLGTQ TLSQILAGRE EIAHSIQTLL ENSP00000332034/1-944 ---------- ---------- --------PQ NPSQ------ ---SSLQELQ ENSBTAP00000014539/1-915 ---------- ---------- --------SQ NPSQ------ ---SSLQELQ bmy_14064T0/1-689 ---------- ---------- --------SQ NPSQ------ ---SSLQELQ ENSTTRP00000014733/1-934 ---------- ---------- --------SQ NPSQ------ ---SSLQELQ 1001 1050 BACU015772/1-1005 DDATKLWGIQ VAQVEIKDVR IPGQLQRSMA AEAEATREAR ARVLAAEGEM ENSP00000332034/1-944 HNAA------ ---------- ---------- ---------- ---------- ENSBTAP00000014539/1-915 HNAA------ ---------- ---------- ---------- ---------- bmy_14064T0/1-689 HNAA------ ---------- ---------- ---------- ---------- ENSTTRP00000014733/1-934 HNAA------ ---------- ---------- ---------- ---------- 1051 1100 BACU015772/1-1005 NASEALKSAS KVLAESPIAL QLRYLQTLTT VATEKNSTIV FP----LPMN ENSP00000332034/1-944 ---------- ---AQSALLQ QVHSASALES YPAQPDGFPS YPSAPGTPFS ENSBTAP00000014539/1-915 ---------- ---AQSALLQ QVHSASALES YPAQPDGFPS YPSAPGTPFS bmy_14064T0/1-689 ---------- ---AQSALLQ QVHSASALES YPAQPDGFPS YPSTPGTPFS ENSTTRP00000014733/1-934 ---------- ---AQSALLQ QVHSASALES YPAQPDGFPS YPSTPGTPFS 1101 1150 BACU015772/1-1005 VLEGVGGISY SNHKTVPNRT ENSP00000332034/1-944 LQPSLSQSGW Q--------- ENSBTAP00000014539/1-915 LQPGLSQSGW Q--------- bmy_14064T0/1-689 LQXGLSQSGW Q--------- ENSTTRP00000014733/1-934 LQPGLSQSGW Q---------