KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:52:38 2014 Check: 00 .. Name: ENSTTRP00000011285/1-797 Len: 808 Check: 309 Weight: 1.00 Name: BACU012401/1-590 Len: 808 Check: 1901 Weight: 1.00 Name: ENSP00000325296/1-805 Len: 808 Check: 5716 Weight: 1.00 Name: ENSBTAP00000014222/1-773 Len: 808 Check: 761 Weight: 1.00 Name: bmy_14125T0/1-663 Len: 808 Check: 2214 Weight: 1.00 // 1 50 ENSTTRP00000011285/1-797 MNAVQCPAGQ ELQKLGSGAW DNPAYIGAPS PRGTPRICTI SSEVPPPSQP BACU012401/1-590 MNAVQCPKGQ ELQKLGSRAW DNPTYSGAPS PRGTLRICTV SSVVPPQPQP ENSP00000325296/1-805 MNAVGSPEGQ ELQKLGSGAW DNPAYSGPPS PHGTLRVCTI SSTGPLQPQP ENSBTAP00000014222/1-773 MNAVGSPEEQ ELQELGSGAW DNPTYSGPPS PRGTLKIYTI SSAVLSQPQP bmy_14125T0/1-663 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000011285/1-797 KKPEDGPQEK AHKTLVSSCC LQICRGIRGL WGTTLTENTA ENQELYVKTT BACU012401/1-590 KKPEDGPQEK AHKTLVSSCC LQICRGIRGL WGTTLTENTA ENRELYVKTT ENSP00000325296/1-805 KKPEDEPQET AYRTQVSSCC LHICQGIRGL WGTTLTENTA ENRELYIKTT ENSBTAP00000014222/1-773 KQPEDGPQEK AHRTLVSSCC LRICHGIRGL WGTTLTENTA ENRELYVKTT bmy_14125T0/1-663 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000011285/1-797 LRELLVYMVF PVDICFLTYG MTSSSAYYYT KVRSELFLHT PSDTGVSFQD BACU012401/1-590 LREILVYVVF LVDICF---- ---------- ---------- ---------- ENSP00000325296/1-805 LRELLVYIVF LVDICLLTYG MTSSSAYYYT KVMSELFLHT PSDTGVSFQA ENSBTAP00000014222/1-773 LRELLVYVVF LVDICLLTYG MTSSSAYYYT KVMSELFLHT PSDTGISFQA bmy_14125T0/1-663 ---------- ---------- MTSSSAYYYT KVMSELFLHT PSDTGVPFQA 151 200 ENSTTRP00000011285/1-797 ISSMADFWDF AQGPLLDSLY WTKWYNNQSL GRGSHSFIYY ENLLLGAPRL BACU012401/1-590 ---------- ---------- ---------- ---------Y ---------- ENSP00000325296/1-805 ISSMADFWDF AQGPLLDSLY WTKWYNNQSL GHGSHSFIYY ENMLLGVPRL ENSBTAP00000014222/1-773 ISSMEDFWDF AQGPLLDSLY WTKWYNNQSL GHGSHSFIYY ENLLLGVPRL bmy_14125T0/1-663 ISSMADFWDF AQGPLLDSLY WTKWYNNQSL GRGSHSFIYY ENLLLGAPRL 201 250 ENSTTRP00000011285/1-797 WQLRVRNDS- VVHEDFHEDI LSCHDVYSPD KED-LPFGLL SGIA-TYH-Q BACU012401/1-590 ---------- ---------- ---------- KEEQLPFGLL NGTAWTYHSQ ENSP00000325296/1-805 RQLKVRNDSC VVHEDFREDI LSCYDVYSPD KEEQLPFGPF NGTAWTYHSQ ENSBTAP00000014222/1-773 RQLRVRNDSC MVHEDFREDI LSCYDVYSPD EEEQLPFGPL NGTAWTYHSQ bmy_14125T0/1-663 QQLR------ ----DFREDI LSCYDVYSPD KEEQLPFGLL NGTAWTYHSQ 251 300 ENSTTRP00000011285/1-797 DELGGSSHWG QLTSYSGGGY HLDLPGSRQA SAEALRDLQE GLWPDRGSRV BACU012401/1-590 DELGGSSHWG RLTSYSRGGY YLDLPGSQQA SAEALRDLQE GLWLDRGSWV ENSP00000325296/1-805 DELGGFSHWG RLTSYSGGGY YLDLPGSRQG SAEALRALQE GLWLDRGTRV ENSBTAP00000014222/1-773 DELGGSSHWG QLTSYSGGGY YLDLPGSRRA CEEALKDLKE GLWLDRGTRV bmy_14125T0/1-663 DELGGSSHWG RLTSYSGGGY YLDLPGSRQA SAEALRDLQE GLWLDRGSRV 301 350 ENSTTRP00000011285/1-797 VFIDFSVYNA NINLFCVLRL VVEFPATGGT IPSWQICTVK LIRCVGKWDF BACU012401/1-590 VFIDFSVYNA NINLFCVLRL VVEFPATGGA IASWQIRTVK LIHYVSNWDF ENSP00000325296/1-805 VFIDFSVYNA NINLFCVLRL VVEFPATGGA IPSWQIRTVK LIRYVSNWDF ENSBTAP00000014222/1-773 VFIDFSVYNA NINLFCVLRL VVEFPATGGA IPSWQIRTVK LIRYVSNWDF bmy_14125T0/1-663 VFIDFSVYNA NINPFCVLRR VVEFPATGGA IPSWQIRTVK LIRYVSNWDF 351 400 ENSTTRP00000011285/1-797 FIIGCEIIFC IFIFYYVVEE SLELHIHWLR YLSSIWNILD LVVILLSIVD BACU012401/1-590 FIIGCEIIFC IFIFYYVVEK ILELHIHRLR YLSSIWNILD LVVILLSIVD ENSP00000325296/1-805 FIVGCEVIFC VFIFYYVVEE ILELHIHRLR YLSSIWNILD LVVILLSIVA ENSBTAP00000014222/1-773 FIVGCEIAFC IFIFYYIVEE ILELRIHRLR YLSSIWNILD LVVILLSIMA bmy_14125T0/1-663 FIIGCEIIFC IFIFYYVMEK ILELHIHRLR YLSSIWNILD LVVILLSIVD 401 450 ENSTTRP00000011285/1-797 VGFHIFRTLA VNRLMGKLLQ QPNTYADFEF LAFWQTQY-N MNAVNLFFAW BACU012401/1-590 VGFHIFRTLE VNRLMGKLLQ QPNTYADFEF LAFWQTQYNN MNAVNLFFAW ENSP00000325296/1-805 VGFHIFRTLE VNRLMGKLLQ QPNTYADFEF LAFWQTQYNN MNAVNLFFAW ENSBTAP00000014222/1-773 VGFHIFRTLE VNRLMGKLLQ QPNMYADFEF LAFWQTQYNN MNAVNLFFAW bmy_14125T0/1-663 VGFHIFQTLE VNRLMGKLLQ QPNTYADFEF LAFWQTQYNN MNTVNLFFAW 451 500 ENSTTRP00000011285/1-797 IKIFKYISFS KTMTQLSSTL ARCAKDILGF AVMFFIVFFA YAQLGYLLFG BACU012401/1-590 IKIFKYISFN KTMIQLSSRL ARCAKDILGF AVMFFIEFFA YAQLGYLLFG ENSP00000325296/1-805 IKIFKYISFN KTMTQLSSTL ARCAKDILGF AVMFFIVFFA YAQLGYLLFG ENSBTAP00000014222/1-773 IKIFKYISFN KTMTQLSSTL ARCAKDILGF AVMFFLVFFA YAQLGYLLFG bmy_14125T0/1-663 IKIFKYISFN KTMTQLSSRL ARCAKDILGF AVMFFIEFFA YAQLGYLLFG 501 550 ENSTTRP00000011285/1-797 TQVESFNTFI KCIFTQFRII LGDFDYNAIN NANRILGPAY FFTYVFFVFF BACU012401/1-590 TQVESFNAFI KSIFTQFQII LGDFDYNAID NANRILGPAY FVTYVFFVFF ENSP00000325296/1-805 TQVENFSTFI KCIFTQFRII LGDFDYNAID NANRILGPAY FVTYVFFVFF ENSBTAP00000014222/1-773 TQVENFSTFV KCIFTQFRII LGDFDYNAID NANRILGPVY FVTYVFFVFF bmy_14125T0/1-663 ---------- ----TQFQII LGDFDYNAIN NANRILGPAY FVTYVFFVFF 551 600 ENSTTRP00000011285/1-797 VLLNMFLAII NDTYSEVKEE LAGQKDELQL SDLLKQGYNK ALLRLHLRKE BACU012401/1-590 VLL------- ---------- ---------- ------GYNK TLLRLHLRKE ENSP00000325296/1-805 VLLNMFLAII NDTYSEVKEE LAGQKDELQL SDLLKQGYNK TLLRLRLRKE ENSBTAP00000014222/1-773 VLLNMFLAII NDTYSEVKEE LAGQKDELQL SDLLRQGYNK TLRRLHLRKE bmy_14125T0/1-663 VLLNMFLAII NDTYSEVKEE LAGQMDELQL SDLLKQGYNK TLLRLHLRKE 601 650 ENSTTRP00000011285/1-797 QVSDVQKVLQ GGEQKIQFED FTNTLKELGH IEHEITELTA AFTRFD-DGN BACU012401/1-590 QVSDVQKVLQ GGEQEIQFMD FTNTLKELGH IEHEITELTA AFTRFGQDGT ENSP00000325296/1-805 RVSDVQKVLQ GGEQEIQFED FTNTLRELGH AEHEITELTA TFTKFDRDGN ENSBTAP00000014222/1-773 QVSDVQKVLQ AGEQEIQFED FTNTLRELEH TEHETTKLTA AFTRFDQDGN bmy_14125T0/1-663 QVSDVQKVLQ GGEQEIQFED FTNTLKELGH TEHEITELTA AFTRFGQDGT 651 700 ENSTTRP00000011285/1-797 HILDEKEQEE MRQDLEEERV ALTAETENLH RSSVSSPPGE SSP-EAAKAG BACU012401/1-590 HILDEKEQEQ MRQDLEEER- ---------- ---------- ---------G ENSP00000325296/1-805 RILDEKEQEK MRQDLEEERV ALNTEIEKLG RSIVSSPQGK SGP-EAARAG ENSBTAP00000014222/1-773 GVLDEKEQKE TQQKLEGERV AVHAEIENLG WSIVRSPPGE SSPKQAAKTG bmy_14125T0/1-663 HILDEKEREQ MRQDLEEERV ALNAETENLR RSTVSSPPGE SSP-EAAEAG 701 750 ENSTTRP00000011285/1-797 GWVSGEEFYM LTRRVVQLEX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU012401/1-590 SLAGGET--- -TRKLLTLPS LPAHLEHK-- ---PKLKILQ QMGR----KG ENSP00000325296/1-805 GWVSGEEFYM LTRRVLQLET VLEGVVSQID AVGSKLKMLE RKGWLAPSPG ENSBTAP00000014222/1-773 GWVSGEEFYT LTRRVLQLET VLEGVMTQVD AMRSKLTMVE RKGWLAPLPG bmy_14125T0/1-663 GWVSEEEFYM LTRRVLQLET VLEGVMTQVD AVGSKLTMLE KKGQLAPSPG 751 800 ENSTTRP00000011285/1-797 XREQGIWEHL QAAPAVTPAP WGLQGGQESG FPCEREGEA- -ERTLSRGES BACU012401/1-590 LSRIVVLKLL HIRT-----P W--------- ---------- ---RALKKSS ENSP00000325296/1-805 VKEQAIWKHP QPAPAVTPDP WGVQGGQESE VPYKREEEAL EERRLSRGEI ENSBTAP00000014222/1-773 AGEQGIWEHL QAAPAVTPAP WGL------- ---------- ---------- bmy_14125T0/1-663 MGEQGIWEHL QAAPAVTPAP WGLQGGQESG GGGVLKHQTA GSSVTTSPEA 801 850 ENSTTRP00000011285/1-797 TMLQRS-- BACU012401/1-590 CLGHTL-- ENSP00000325296/1-805 PTLQRS-- ENSBTAP00000014222/1-773 -------- bmy_14125T0/1-663 PSAHTLHF