KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:52:24 2014 Check: 00 .. Name: ENSP00000349436/1-863 Len: 969 Check: 4864 Weight: 1.00 Name: ENSBTAP00000014101/1-868 Len: 969 Check: 7164 Weight: 1.00 Name: BACU007461/1-967 Len: 969 Check: 3685 Weight: 1.00 Name: ENSTTRP00000015324/1-862 Len: 969 Check: 4100 Weight: 1.00 Name: bmy_03373T0/1-785 Len: 969 Check: 2964 Weight: 1.00 // 1 50 ENSP00000349436/1-863 MRLALLWALG LLGAGSPLPS WPLPNIGGTE EQQAESEKAP REPLEPQVLQ ENSBTAP00000014101/1-868 MRLALLWALG LLGAGSPLPS RPLPDIGVTE EMQARPERAQ NGPLEPQILQ BACU007461/1-967 MRLALLWALG LLGAGSPLPS RPLPGIGGTE EKQARPERAL NGSSEPQILQ ENSTTRP00000015324/1-862 MRLALLWALG LLGAGSPLPS RPLPDIGGTE EKQARPERAL NGSSEPQILQ bmy_03373T0/1-785 ---------- ---------- -------GTE EKQARPERVL NGSSEPQILQ 51 100 ENSP00000349436/1-863 DDLPISLKKV LQTSLPEPLR IKLELDGDSH ILELLQNREL VPGRPTLVWY ENSBTAP00000014101/1-868 DNPTFSLAEA LQTSLPEALR IKLELDGESH ILELLQNREL VSGRPTLVWY BACU007461/1-967 DNLTLSLAEV LQTSLPEALR IKLELDGESH ILELLQNREL VSGRPTLVWY ENSTTRP00000015324/1-862 DNLTLSLAEV LQTSLPEALR IKLELDGESH ILELLQNREL VSGHPTLVWY bmy_03373T0/1-785 DNLTLSLAEV LQ-------- ---------- ---------L VSGRPTLVWY 101 150 ENSP00000349436/1-863 QPDGTRVVSE GHTLENCCYQ GRVRGYAGSW VSICTCSGLR GLVVLTPERS ENSBTAP00000014101/1-868 QPDGTRVVGE GHTLENCCYE GRVRGHAHSW VSLCTCSGLR GLVILSPERS BACU007461/1-967 QPDGTRVVSE GHTLENCCYQ GRVQGHADSW VSVCTCSGLR GLVILSPERS ENSTTRP00000015324/1-862 QPDGTRVVSE GHTLENCCYH GKVQGHADSW VSVCTCSGLR GLVILSPERS bmy_03373T0/1-785 QPDGTRVVSE GHTL-NCCYQ GRVQGHADSW VSVCTCSGLR GLVILSPERS 151 200 ENSP00000349436/1-863 YTLEQGPGDL QGPPIISRIQ DLHLPGHTCA LSWRESVHTQ KPPEHPLGQR ENSBTAP00000014101/1-868 YSVELGPGDL QGPPVVSRIQ DLLLPRHTCA LSWPTSVLPQ ALPEPSLGQR BACU007461/1-967 YSLELGPGDL RGPPVISRLQ DLLLPGHTCA LSWPASVPTQ APPEHPLGQR ENSTTRP00000015324/1-862 YSLELGPGDL QGPPVISRLQ DLLLAGHTCA LSWPASVPTQ APPEHPLGQR bmy_03373T0/1-785 YSLELGPGDL QGPPVISRLQ DLLLPGHTCA LSWPASVPTQ APPEHPLGQR 201 250 ENSP00000349436/1-863 HIRR-RRDVV TETKTVELVI VADHSEAQKY RDFQHLL--- ------NRTL ENSBTAP00000014101/1-868 HTHRWRRDVV TETKIVELVI VADHAEVKRH RDFQSLL--- ------NRTL BACU007461/1-967 HLLRWRRDVV TETKIVELVI VADHSEVQRY RDFQSLLNRT LEVXXXNRTL ENSTTRP00000015324/1-862 HLLR-RRDVV TETKIVELVI VVDHSEVQRY RDFQSLL--- ------NRTL bmy_03373T0/1-785 HLLQWRRDVV TETKIVELVI VADHSEVQRY RDFQSLL--- ------NRTL 251 300 ENSP00000349436/1-863 EVALLLDTFF RPLNVRVALV GLEAWTQRDL VEISPNPAVT LENFLHWRRA ENSBTAP00000014101/1-868 EVALLLDTFF RPMNVRVALV GLEAWTQHNL IEISQNPGLT LDSFLHWRRT BACU007461/1-967 EVALLLDTFF RPLNVRVVLV GLEAWTQRDL IEINQHPGLT LDSFLRWRRT ENSTTRP00000015324/1-862 EVALLLDTFF RPLNVRVALV GLEAWTQRDL IEISQDPGLT LDSFLRWRRT bmy_03373T0/1-785 EVALLLDTFF RPLNVRVALV GLEAWTQRDL IEINQHPGLT LDSFLRWRRT 301 350 ENSP00000349436/1-863 HLLPRLPHDS AQLVTGTSFS GPTVGMAIQN SICSPDFSGG VNMDHSTSIL ENSBTAP00000014101/1-868 NLLPRLPHDS AQLVTATSFS GPMVGMAIQN SICSPEFSGG VNMDHSTSIL BACU007461/1-967 DLLPRLPHDS AQLVTATSFS GPMVGMAIQN SICSPEFSGG VNMDHSTSIL ENSTTRP00000015324/1-862 DLLPRLPHDS AQLVTATSFS GPMVGMAIQN SICSPEFSGG VNMDHSTSIL bmy_03373T0/1-785 ELLPRLPHDS AQLVTATSFS GPMVGMAIQN SICSPEFSGG VNMDHSTSIL 351 400 ENSP00000349436/1-863 GVASSIAHEL GHSLGLDHDL PGNSCPCPGP APAKTCIMEA STDFLPGLNF ENSBTAP00000014101/1-868 GVASSIAHEL GHSLGLGHDS PGNSCPCPGP APAKSCIMQA STDFLPGLNF BACU007461/1-967 GVASSIAHEL GHSLGLGHDS PGNSCPCPGP APAKSCIMEA STDFLPGLNF ENSTTRP00000015324/1-862 GVASSIAHEL GHSLGLGHDS PGNSCPCPGP APAKSCIMEA STDFLPGLNF bmy_03373T0/1-785 GVASSIAHEL GHSLGLGHDS PGNSCPCPGP APAKSCIMEA STDFLPGLNF 401 450 ENSP00000349436/1-863 SNCSRRALEK ALLDGMGSCL FERLPSLPPM AAFCGNMFVE PGEQCDCGFL ENSBTAP00000014101/1-868 SNCSRQALEE ALLGGMGSCL FERLSGLPSM ASVCGNMLVE PGEQCDCGFP BACU007461/1-967 SNCSRQALEK ALLGGMGSCL FERLSGLPSM ASVCGNMLVE PGEQCDCGFP ENSTTRP00000015324/1-862 SNCSRQAL-K ALLGGMGSCL FERLSGLPSM ASVCGNMLVE PGEQCDCGFP bmy_03373T0/1-785 SNCSRQALEK ALLGGMGSCL FERLSGLPSM ASVCGNMLVE PGEQCDCGFP 451 500 ENSP00000349436/1-863 DDCVDPCCDS LTCQLRPGAQ CASDGPCCQN CQLRPSGWQC RPTRGDCDLP ENSBTAP00000014101/1-868 DECTDPCCDY FTCQLRPGAQ CASDGLCCHN CQLRPAGWKC RPTRGDCDLP BACU007461/1-967 DDCTDPCCDY FTCQLRPGAQ CASDGLCCQN CQLRPAGWQC RSTRGDCDLP ENSTTRP00000015324/1-862 DDCTDPCCDY FTCQLRPGAQ CASDGLCCQN CQLRPAGWQC RSTRGDCDLP bmy_03373T0/1-785 DDCTDPCCDY FTCQLRPGAQ CASDGLCCQN CQLRPAGWQC RSTRGDCDLP 501 550 ENSP00000349436/1-863 EFCPGDSSQC PPDVSLGDGE PCAGGQAVCM HGRCASYAQQ CQSLWGPGAQ ENSBTAP00000014101/1-868 EFCPGDSSQC PPDVSMGDGE PCASGQAVCM QGRCASYAQQ CQALWGPGAK BACU007461/1-967 EFCPGDSSQC PPDVSLGDGE PCAGGQAVCM QGRCTSYAQQ CQALWGPGAQ ENSTTRP00000015324/1-862 EFCPGDSSQC PPDVSLGDGE PCAGGQAVCM QGRCTSYAQQ CQALWGPGAQ bmy_03373T0/1-785 EFCPGDSSQC PPDVSLGDGE PCAGGQAVCM QGRCTSYAQQ CQALWGPGAQ 551 600 ENSP00000349436/1-863 PAAPLCLQTA NTRGNAFGSC GRNPSGSYVS CTPRDAICGQ LQCQTGRTQP ENSBTAP00000014101/1-868 PAAPLCLLTA NTRGDAFGSC GRNPDGSYVS CAPRDAMCGQ LQCQGGRAQP BACU007461/1-967 PAAPLCLLTA NTRGDAFGSC GRRPDGSYVS CAPRDAICGQ LQCQGGRAQP ENSTTRP00000015324/1-862 PAAPLCLLTA NTRGDAFGSC GRSPDGSYVS CAPRDAICGQ LQCQGGRAQP bmy_03373T0/1-785 PAAPLCLLTA NTRGDAFGSC GRRPDGSYVS CAPRDAICGQ LQCQGGRAQP 601 650 ENSP00000349436/1-863 LLGSIRDLLW ETIDVNGTE- -LNCSWVHLD LGSDVAQPLL TLPGTACGPG ENSBTAP00000014101/1-868 LLGSARDLRW EMLEANGTQL RLNCSWVHLD LGNDVAQPLL TLPGTACGPG BACU007461/1-967 LLGSARDLHW EMLEANGTQL KLNCSWVHLD LGNDVAQPLL TLPGTACGPG ENSTTRP00000015324/1-862 LLGSARDLHW EMLEANGTQ- -LNCSWVHLD LGNDVAQPLM TLPGTACGPG bmy_03373T0/1-785 LLGSARDLHW EMLEASGTQL KLNCSWVHLD LGNDVAQPLL TLPGTACGPG 651 700 ENSP00000349436/1-863 LVCIDHRCQR VDLLGAQECR SKCHGHGVCD SNRHCYCEEG WAPPDCTTQL ENSBTAP00000014101/1-868 LVCVEQQCQP IEVLGAQECQ RRCHGHGVCD SNRRCHCEEG WAPPDCTTHV BACU007461/1-967 LVCVNHQCQP VEILGTQECR SKCHGHGVCD SNRHCHCEEG WAPPDCTTHI ENSTTRP00000015324/1-862 LVCIDHQCQP VEILGTQECQ SKCHGHGVCD SNRRCHCEEG WAPPDCTTHI bmy_03373T0/1-785 L--------- ---------- -------VCD SNRHCHCEEG WAPPDCTTHI 701 750 ENSP00000349436/1-863 KATSSLTTGL LLSLLVLLVL VMLGASYWYR ARLHQRLCQL KGPTCQY--R ENSBTAP00000014101/1-868 RATSSLTTGL PLSLLLLLVL VLLGASYWHR ARLHQRLCQL KGPSCQYRLR BACU007461/1-967 RANSSLTTGL PLSLLLLLVL VLLGASYWHR ARLRQRLCQL KGPSCQY--R ENSTTRP00000015324/1-862 RATSSLTTGL PLSLLLLLVL VLLGASYWHR ARLRQRLCQL KGPSCQY--R bmy_03373T0/1-785 RANSSLTTGL PLSLLLLLVL VLLGASYWHR ARLRQRLCQL KGPSCQY--R 751 800 ENSP00000349436/1-863 AAQSGPSERP GPPQRALLAR GTKQASALSF PAPPSRPLPP DPVSKRLQAE ENSBTAP00000014101/1-868 AAQSGPPERP GPPQRALVMP GAKQASALGF PAPPSRPLPP DPVPKRLQAE BACU007461/1-967 AAQSGPPERP GPPQRALLMP GAKQASALGF PAPPSRPLPP DPVPKRLQAE ENSTTRP00000015324/1-862 AAQSGPPERP GPPQRALLMP GAKQASALGF PAPPSRPLPP DPVPKRLQAE bmy_03373T0/1-785 AAQSGPPERP GPPQRALLMP SAKQASALGF PAPPSRPLPP DPVPKRLQAE 801 850 ENSP00000349436/1-863 LADRPNPPTR PLPADPVVRS PKSQ-----G PAKPPP---- -------PRK ENSBTAP00000014101/1-868 LADRPNPPTR PLPADPVVRR PKSQ-----G PTKPPP---- -------PRK BACU007461/1-967 LADRPNPPNR PLPADPVVRY PKVTVGGEKG TASPPTQGCG AGSLASGASS ENSTTRP00000015324/1-862 LADRPNPPTR PLPADPVVRY PKSQ-----G PTKPPP---- -------PRK bmy_03373T0/1-785 LADRPNPPNR PLPADPVVRY PKSQ-----G PTKPPP---- -------PRK 851 900 ENSP00000349436/1-863 PLPADPQGRC PSGDL----- ---------- ---------- ----PGPGAG ENSBTAP00000014101/1-868 PLPADPHGRR PSGDL----- ---------- ---------- ----PGPGAG BACU007461/1-967 KMPPVPKGTY PSGIFNGDRL LRGDAVVELA LKDYLDIFCP HYEGPGPPEG ENSTTRP00000015324/1-862 PLPTDPPGQH PSADL----- ---------- ---------- ----PDSGAG bmy_03373T0/1-785 PLPADPQGQR PSSDL----- ---------- ---------- ----PGPGAG 901 950 ENSP00000349436/1-863 ---------- ---------- ---------I PPLVVPSRPA PPP------- ENSBTAP00000014101/1-868 ---------- ---------- ---------I PPPVVPSRPA PPP------- BACU007461/1-967 PETFALYMVD WPGYEACQAK GPGAFKRWEC SLPFAPFGPV RFSEKIQRFT ENSTTRP00000015324/1-862 ---------- ---------- ---------I PPPVVPSRPA PPP------- bmy_03373T0/1-785 ---------- ---------- ---------I PPPVVPSRPA PPP------- 951 1000 ENSP00000349436/1-863 ---------P TVSSLYL-- ENSBTAP00000014101/1-868 ---------P AASSPYL-- BACU007461/1-967 PFSLGFEFLP GETYYYICE ENSTTRP00000015324/1-862 ---------P AVSSLYL-- bmy_03373T0/1-785 ---------P AVSSLYL--