KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:52:21 2014 Check: 00 .. Name: ENSP00000295542/1-706 Len: 784 Check: 3640 Weight: 1.00 Name: ENSBTAP00000014083/1-704 Len: 784 Check: 2106 Weight: 1.00 Name: ENSTTRP00000015325/1-707 Len: 784 Check: 9447 Weight: 1.00 Name: bmy_03372T0/1-784 Len: 784 Check: 9460 Weight: 1.00 Name: BACU007462/1-709 Len: 784 Check: 7161 Weight: 1.00 // 1 50 ENSP00000295542/1-706 MDIKHH---- ---------- ---------- -QNGTRGQ-- -----RRKQP ENSBTAP00000014083/1-704 MAIRPH---- ---------- ---------- -QNRAKGQ-- ------RKLP ENSTTRP00000015325/1-707 MAIRPH---- ---------- ---------- -QNGAKGQ-- -----KRKLP bmy_03372T0/1-784 VPHPPSGSPK SLPPSSRFPQ PLPRCKPLIL VNHSPAGRVV CWPCWAKLFD BACU007462/1-709 MNHAP----- ---------- ---------- -----AGRVV CWPCWAKLFD 51 100 ENSP00000295542/1-706 HTTVQRLLTW GLPVSCSWFL WRQPGEFPVT ALLLGAGAGG LLAIGLFQLL ENSBTAP00000014083/1-704 HTTVQGFLNW GLPRSCNQFL WRQPGEFPVS AFLLGAGTGG LLAIGLFQLL ENSTTRP00000015325/1-707 HTTVQRFLSW GLPVSCSRFL WRQPGEFPVS ALLLGAGAGG LLAIGLFQLL bmy_03372T0/1-784 PSAVQRFLSW GLPVSCSRFL WRQRGEFPVS AFLLGAGTGG LLAIGLFQLL BACU007462/1-709 PSAVQRFLSW GLPVTCSRFL WRQRGEFPVS AFLLGAGTGG LLAIGLFQLL 101 150 ENSP00000295542/1-706 VNPMNIYEEQ KIMFLYSLVG LGAMGWGTSP HIRCASLLLV PKMLGKEGRL ENSBTAP00000014083/1-704 VNPMNIYEDQ KMVTLYSLVG LGVIGWGTSP HIRCASLLLI PKMLGKEGRL ENSTTRP00000015325/1-707 VNPMNIYEDQ KMVTLYGLVG LGAIGWGTSP HIRCASLLLV PKMLGKEGRL bmy_03372T0/1-784 VNPMNIYEDQ KMVTLYSLVG LGAIGWGTSP HIRCASLLLV PKMLGKEGRL BACU007462/1-709 VNPMNIYEDQ KMVTLYSLVG LGAIGWGTSP HIRCASLLLV PKMLGKEGRL 151 200 ENSP00000295542/1-706 FVLGYALAAI YVGPVANLRH NLNNVIASLG CTVELQINNT RAAWRISTAP ENSBTAP00000014083/1-704 FVLGYALAAI YEGPVANLRH NLNAVIASLG CTVELQINNT RTAWRISTAP ENSTTRP00000015325/1-707 FVLGYALAAI YEGPVANLRH NLNEVIASLG CTVELQINNT RSAWRVSTAP bmy_03372T0/1-784 FVLGYALAAI YEGPVANLRH NLNEVIASLG CTVELQINNT RSAWRVSTAP BACU007462/1-709 FVLGYALAAI YEGPVANLRH NLNEVIASLG CTVELQINNT RSAWRVSTAP 201 250 ENSP00000295542/1-706 LRAMFKDLLS SKELLRAETR NISATFEDLD AQVNSETGYT PEDTMDSGET ENSBTAP00000014083/1-704 LRAVFKDLLS SKESLKAETQ NITNSFEELD AQVNSESGFS PKDAEGS-ET ENSTTRP00000015325/1-707 LRAVFKDLLS SKESLKAKTQ NITNTFEELD AQVSSESGYA PEDAEGSEET bmy_03372T0/1-784 LRAVFKDLLS SKESLKAETQ NITNSFEELD AQVNSESGYA PEDAEGLEET BACU007462/1-709 LRAVFKDLLS SKESLKAKTQ NITNSFEELD AQVNSESGYA PEDAEGSEET 251 300 ENSP00000295542/1-706 AQGREARQAP ASRLHLSTQK MYELKTKLRC SYVVNQAILS CRRWFDRKHE ENSBTAP00000014083/1-704 ALGEETPAAS AFRHHLSTQK TYELKTKLRC SYVVNEAMFS CRRWFDQKHG ENSTTRP00000015325/1-707 APGRETLRAS AFRHRLSTQK MYELKTKLRC SHVVNKAMIN CRRWFDQKHR bmy_03372T0/1-784 APGRETLRAS AFRHRLSTQK MYELKTKLRC SHVVNKAMIN CRRWFDQKHR BACU007462/1-709 APGRETLRAS AFRHRLSTQK MYELKTKLRC SHVVNKAMIN CRRWFDQKHR 301 350 ENSP00000295542/1-706 QCMKHIWVPL LTHLLCLPMK FKFFCGIAKV MEVWCRNRIP VEGNFGQTYD ENSBTAP00000014083/1-704 VCMQRIWVPL LNHLLCLPMK FKFFCSIAKV MEVWCRSRIP VEGNFGQTYD ENSTTRP00000015325/1-707 ECLQRIWVPL LNHLLCLPMK FKFFCGIAKV MEVWCRSRIP VEGNFGQTYD bmy_03372T0/1-784 ECTQXIWVPL LNHLLCLPMK FKFFCGIAKV MEVWCRSRIP VEGNFGQTYD BACU007462/1-709 ECTQRIWVPL LNHLLCLPMK FKFFCGIAKV MEVWCRSRIP VEGNFGQTYD 351 400 ENSP00000295542/1-706 SLNQSIRGLD GEFSANIDFK EEKQAGVLGL NTSWERVSTE VRDYVYRQEA ENSBTAP00000014083/1-704 SLNQSIHGLE GEFSATINLK EERRAGVLGL NTSWKHVSTE VRDYVRRQEA ENSTTRP00000015325/1-707 SLNQSIRGLE GEFSATINLK EEKRAGVLGL NTSWEHVSTE VRDYVRRQEA bmy_03372T0/1-784 SLNQSIRGLE GEFSATINLK EEKRAGVLGL NTSWEHVSTE VRDYVRRQEA BACU007462/1-709 SLNQSIRGLE GEFSATINLK EEKQAGVLGL NTSWEHVSTE VRDYVRRQEA 401 450 ENSP00000295542/1-706 RLEWALGLLH VLLSCTFLLV LHASFSYMDS YNHDIRFDNI YISTYFCQID ENSBTAP00000014083/1-704 QLERTLGLLH VLLSCTFLLV LHSCFSYMDS YNGDIRFDNI YISTYFCQID ENSTTRP00000015325/1-707 RLEWILGLLH VLLSCTFLFV LHACFSYVDS YNGDIRFDNI YISTYFCQID bmy_03372T0/1-784 QLEWVLRLLH VLLSCTFLLV LHACFSYVDS YNGDIRFDNI YISTYFCQID BACU007462/1-709 QLEWVLRLLH VLLSCTFLLV LHACFSYVDS YNGDIRFDNI YISTYFCQID 451 500 ENSP00000295542/1-706 DRRKKLGKRT LLPLRKAEEK TVIFPCKPTI QASEMSNVVR ELLETLPILL ENSBTAP00000014083/1-704 ERRKKLGKQT LLPLRKAEKK TVIFPWDPTI QAAEMRNVLR ELVETLPVLL ENSTTRP00000015325/1-707 ERRKKLGKRT LLPLRSAEKK TVIFPWDPTI QATEMRNVMK ELMETLPVLL bmy_03372T0/1-784 ERRKKLGKQT LLPLRKAEKK TVIFPWDPTI QASEMRNVVR MAWRAGPWIL BACU007462/1-709 ERRKKLGKQT LLPLRKAEKK TVIFPWDPTI QASEMRNVIR ELAETLPVLL 501 550 ENSP00000295542/1-706 LLVVLCGLD- ---------- ---------- ---------- ---------- ENSBTAP00000014083/1-704 LLLLLCGLD- ---------- ---------- ---------- ---------- ENSTTRP00000015325/1-707 LLLLLCXXX- ---------- ---------- ---------- ---------- bmy_03372T0/1-784 LEAGICGVEG KSVRGDSMPG PKALPSSAPP APWADKGARG DTARAAAATT BACU007462/1-709 LLLLLCGLD- ---------- ---------- ---------- ---------- 551 600 ENSP00000295542/1-706 --WALYSIFD TIRHH--SFL QYSFRSSHKL EVKVGGDSML ARLLRKTIGA ENSBTAP00000014083/1-704 --WALYSIFD TIRHH--SFV QYSFRSSHKL EVKVGGDSML ARLLRNTIGA ENSTTRP00000015325/1-707 --XXXXXXXX XXXXX--XXX XXXXXXSHKL EVKVGGDSML ARLLRNTIGA bmy_03372T0/1-784 AVWPGLGSLL HLRHHPPPLL RAVLLPHHKL EVKVGGDSML ARLLRNTIGA BACU007462/1-709 --WALYSIFD TIRHH--SFV QYSFRSSHKL EVKVGGDSML ARLLRNTIGA 601 650 ENSP00000295542/1-706 LNTSSETVME SNNMPCLPQP VGLDARAYWR AAVPIGLLVC LCLLQAFGYR ENSBTAP00000014083/1-704 LNTSSEMVVD SNNMPCLPQP VPLNTRAYLK AALPSGLLAC LCLLQAFGYR ENSTTRP00000015325/1-707 LNTSSETVVE SNNMPCLPQP VLLSTRAYLR AALPSGLLVC LCLLQAFSYR bmy_03372T0/1-784 LNTSSEMVVE SNNMPCLPQP VPLSTRAYLR AALPSSLLVC LCLLQAFGYR BACU007462/1-709 LNTSSEMVVE SNNMPCLPQP VPLSTRAYLR AALPSSLLVC LCLLQAFGYR 651 700 ENSP00000295542/1-706 LRRVIAAFYF PKREKKRILF LYNDLLKKRA AFTKLRRAAI LRRERQQKAP ENSBTAP00000014083/1-704 LRRVIAAFYF PKREKKRILF LYNDLLRKRA AFTQLRRATI VRRARQQRAP ENSTTRP00000015325/1-707 LRRVIVAFYF PKREKKRILF LYNDLLRKRA AFTQLRRATI VRRARQQRAP bmy_03372T0/1-784 LRRVIAAFYF PKREKKRILF LYNELLRKRA AFTQLRRATI VRRARQQRAP BACU007462/1-709 LRRVIAAFYF PKREKKRILF LYNELLRKRA AFTQLRRATI MRRARQQRAP 701 750 ENSP00000295542/1-706 RHPLADILHR GC-PLLRRWL CRRCVVCQAP ETPESYVCRT LDCEAVYCWS ENSBTAP00000014083/1-704 RRHLVDILHR RC-PLLRPLL RRRCVVCQAP ETPESYVCPT PNCEAVYCRS ENSTTRP00000015325/1-707 RRHLADILHR RCLPLLRPWL RRRCVVCQAP ETPESYVCPT PDCEAVYCRS bmy_03372T0/1-784 RRHLADILHR RCLPLLRPWL RRRCVVCQAP ETPESYVCPT PDCEAVYCRS BACU007462/1-709 RRHLADILHR RCLPLLRPWL RRRCVVCQAP ETPESYVCPT PDCEAVYCRS 751 800 ENSP00000295542/1-706 CWDDMRQRCP VCTPREELSS SAFSDSNDDT AYAG ENSBTAP00000014083/1-704 CWNDMRQRCP VCTPREELSS SAYSDSNDDA TYAE ENSTTRP00000015325/1-707 CWNDMRQRCP VCTPREELSS SAYSDSNDDA TYAE bmy_03372T0/1-784 CWNDMRQRCP VCTPSEELSS SAYSDSNDDA TYAE BACU007462/1-709 CWNDMRQRCP VCTPREELSS SAYSDSNDDA TYAE