KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:52:20 2014 Check: 00 .. Name: ENSP00000357409/1-773 Len: 844 Check: 8164 Weight: 1.00 Name: ENSBTAP00000014066/1-779 Len: 844 Check: 1269 Weight: 1.00 Name: ENSTTRP00000015327/1-699 Len: 844 Check: 8954 Weight: 1.00 Name: bmy_03371T0/1-519 Len: 844 Check: 4855 Weight: 1.00 Name: BACU020415/1-702 Len: 844 Check: 1594 Weight: 1.00 // 1 50 ENSP00000357409/1-773 MPKVMKDVVH PLGGEEPSMA RAVVRSVGGF TLGLSLATAY GLLELLVEGH ENSBTAP00000014066/1-779 MSKVTKDAVQ PLEAEEPSVA RAVVRSTGGF ILGLSLATAY GLLELLVEGH ENSTTRP00000015327/1-699 MPEVTKDAVH PLGAEEPSVA RAVVRSTGGF ILGLSLATAY GLLELLVEGH bmy_03371T0/1-519 ---------- --------MA RAVVRSTAGF ILGLSLATAY GLLELLVEGH BACU020415/1-702 MPKVMKDAAH PLGAEEPSMA RAVVRSTGGF ILGLSLATAY GLLELLVEGH 51 100 ENSP00000357409/1-773 SPWGCLVGTL TLAAFLSLGM GFSRQVRATV LLLLPQAFSR QGRTLLLVAA ENSBTAP00000014066/1-779 SPWGCLVGTF TLAAFLSLGM GFSRQVRVTV LLLLPQAFSK QGRTLLLVAA ENSTTRP00000015327/1-699 SPWGCLVGTL TLAAFLSLGM GFSRQVRVTI LLLLPQAFSK QGRTLLLVAT bmy_03371T0/1-519 SPWGCLVGTL TLAGFLSLGM GFSRQVRVTV LLLLPQAFSK QGRTLLLVAA BACU020415/1-702 SPWGCLVGTL TLAAFLSLGM GFSRQVRVTV LLLLPQAFSK QGRTLLLVAA 101 150 ENSP00000357409/1-773 FGLVLQGPCA NTLRNFTRAS EAVACGAELA LNQTAEVLQR AKQP------ ENSBTAP00000014066/1-779 FGLVLQGPCA NTLRNFTQAS EAVACGAELA LNQTAKVLER AKQP------ ENSTTRP00000015327/1-699 FGLVLQGPCA NTLRNFTRAS EAVACGAELA LNQTAEVLER ARQP------ bmy_03371T0/1-519 FGLVLQGPCA NTLRNFTRAS EAVACGAELA LNQTAEVLER ARQPLGNGEN BACU020415/1-702 FGLVLQGPCA NTLRNFTRAS EAVACGAELA LNQTAEVLER ARQP------ 151 200 ENSP00000357409/1-773 ---------- ----LVSALN KIKAIARKTK EVADRVRKFF RSIMDGVKHI ENSBTAP00000014066/1-779 ---------- ----LVSALN KIKAIAQRAK QVADRVRKFF RSIMDGVKHV ENSTTRP00000015327/1-699 ---------- ----LVSALN KIKAIAQKAK EVADQVRKFF RSIMDGVKHI bmy_03371T0/1-519 QPSEEEIRQY SCXRLSGALN KIKAIAQKAK EVADRVRKFF RSIMDGVKHI BACU020415/1-702 ---------- ----LVSALN KIKAIAQKAK EVADRVRKFF RSIMDGVKHI 201 250 ENSP00000357409/1-773 ---------- ---------- ---------- ---------- -----ARALR ENSBTAP00000014066/1-779 ---------- ---------- ---------- ---------- -----ARALR ENSTTRP00000015327/1-699 ---------- ---------- ---------- ---------- -----ARALR bmy_03371T0/1-519 VPTGYSTARP LTMSLSSSGY CPGVPHPPPE KMLQDSWVPA PQPSPARALR BACU020415/1-702 ---------- ---------- ---------- ---------- -----ARALR 251 300 ENSP00000357409/1-773 NVWQWLLHIG DVCNSELGNP YLKCARVFDD AKDSCMMVIP QAYHLCYVLM ENSBTAP00000014066/1-779 NVWYWLLHIG DVCNSELGNP YLKCARVFDD AKDSCMKVIP QAYHLCFVLM ENSTTRP00000015327/1-699 NVWYWLLHIG DVCNSELGNP YLKCARVFDD AKDSCMQVIP QAYHLCFVLM bmy_03371T0/1-519 NVWYWLLHIG DVCNSELGNP YLKCARVFDD AKDSCMQVIP QAYHLCYVLM BACU020415/1-702 NVWYWLLHIG DVCNSELGNP YLKCARVFDD AKDSCMQVIP QAYHLCYVLM 301 350 ENSP00000357409/1-773 PFKLALCGLA SLVQVFCVIP KYIQPFLRQT IGTPVIQLLN RVRQEFEFNM ENSBTAP00000014066/1-779 PFKLMLCGLA SVVQVFCIIP GYIQTFLRET MSTPVRNLIN RVRQEFEFNM ENSTTRP00000015327/1-699 PFKLMLCGLA SVAQVFCIIP GYIQTFMRES IVTPVRRLIN QVRHEFEFNM bmy_03371T0/1-519 PFKLMLCGLA SVVQVFCIIP GYIQTFLRES IVTP------ ---------- BACU020415/1-702 PFKLMLCGLA SVVQVFCVIP GYIQTFLRES IVTPVRRLIN QVRQEFEFNM 351 400 ENSP00000357409/1-773 TATHHFSVDL NASRSLSQVA MDLHEAVSMK LHRVREALAL MGFTTPLLLV ENSBTAP00000014066/1-779 TATHYFSVDL NASRSLSQVA LDLQEAVSMK LYRVREALAL MGYTTPLLLL ENSTTRP00000015327/1-699 TATHHFSVDL NASRSLSQVA LDLHEAVSMK LYRVQEAVAL MGYTTPLLLV bmy_03371T0/1-519 ---------- ---------- ---------- ---------- ---------- BACU020415/1-702 TATHHFSVDL NASRSLSQVA LDLHEAVSMK LHRVREALAL MGYNTPLLLM 401 450 ENSP00000357409/1-773 LLYLQALFYR YCYLNWDHYD NIYITSRFLR MEAVRSTAGL PTVLPLSAHE ENSBTAP00000014066/1-779 LLYLQALYYR YGYLNWDSFN NVYITSRFLR MEAVRSRAGL PTVLPLTAHE ENSTTRP00000015327/1-699 FLYLQALCYR YRYLNWDNFD NFYITSRFLH MDAVRSKAGL PTVLPLSARE bmy_03371T0/1-519 ------LCYR YRYLNWDNFD NFYITSRFLR MDAVRSVAGL PTVLPLSARE BACU020415/1-702 LLYLQALCYR YRYLNWDNFD NFYITSRFLH MDAVRSVAGL PTVLPLSARE 451 500 ENSP00000357409/1-773 ARRYIPPGSI FLSQWEKFFY ILETFNLIRH LLLVLFLVFL DYAVFWVLDL ENSBTAP00000014066/1-779 ARHYIQPGSI FLSRWEQIFC ILAIFHLARH LLLVLFLVFL DYAVFWVLDL ENSTTRP00000015327/1-699 ARHYIQPGSL -LSQREQILY ILATFHIIRH LLLIFLLVFL DYATFWVLDL bmy_03371T0/1-519 ARQYIQPGSI FLSQWEQIFY ILATFHLIRH LLLVFLLVFL DYAVFWVLDL BACU020415/1-702 ARQYIQPGSI FLSQWEQMFY ILATFHLIRH LLLVFLLVFL DYAIFWVLDL 501 550 ENSP00000357409/1-773 ARHQLQGEIV ARSPVLVSLT VEGTGYAGNI YRDLVSAFDV LQQGNISILS ENSBTAP00000014066/1-779 ARYHLQGEVV ARSPVFMSIT VEGAGSTGKI YRDLVSAFDV LQQGNITVLS ENSTTRP00000015327/1-699 ARYQLQGEIV ARSPVLISIT VEGTGSTGKI YRDLVSAFDV LQQGNITVLS bmy_03371T0/1-519 ARYQLQGDIV ARSPVLISIT VEGTGSTGKI YRDLVSAFDV LQQGNITILS BACU020415/1-702 ARYQLQGEIV ARSPVLISIT VEGTGSTGKI YRDLVSAFDV LQQGNITILS 551 600 ENSP00000357409/1-773 RRCLLRPSEP DSTGYIVIGV MYGLCFFITL FGSYVSRLRR VICASYYPSR ENSBTAP00000014066/1-779 RRCQLHPSEP NSTGYIIIGV MYGLCFFVTL FGNHVSRLRR LICASYYPSR ENSTTRP00000015327/1-699 QRCRLRPSEP NTTGYIAIGV MYGLCFFVTL FGSYVSRLRR VICASYYPSR bmy_03371T0/1-519 QRCLLHPSEP NTTGYIVIGV MYGLCFFITL FGNYVSRLRR VICASYYPSR BACU020415/1-702 QRCLLRPSEP NTTGYIVIGV MYGLCFFITL FGNYVSRLRR VICASYYPSR 601 650 ENSP00000357409/1-773 EQERISYLYN VLLSRRTNLL AALHRSVRRR AADQGHRSAF LVLASRCPCL ENSBTAP00000014066/1-779 EQERISYLYN VLLSRRTKLL AALHRSVRRR AADHSHMSIL LVLAGRCSCL ENSTTRP00000015327/1-699 EQERISYLYN VLLSRRTKLL PALHRSVRRR AADQGHMSVL QVLARRCSCL bmy_03371T0/1-519 E--------- ---------- ---------- ---------- ---------- BACU020415/1-702 EQERISYLYN VLLSRRTKLL AALHRSVRRR AADQGHMSVL QVLARRCSCL 651 700 ENSP00000357409/1-773 GPFVSHFWLH QAYCLGCGQP QDEGDMENTV SCSTPGCQGL YCLTCFRLLD ENSBTAP00000014066/1-779 VPFISYFSQH QTYCLGCGQP QDEGDTENSV ACGTPGCRGL FCLTCFRLLG ENSTTRP00000015327/1-699 APFISHSRQH QTYCLGCGQP QDEGDTENSV SCSTPGCRGL FCLT-FRLLD bmy_03371T0/1-519 ---------- ---------- ---------- ---------- ---------- BACU020415/1-702 APFISHSRQQ QTYCLGCGQP QDEGDTENSV SCSTPGCRGL FCLTCFRLLD 701 750 ENSP00000357409/1-773 NTCSVCASPL SYQGDLDLEL DSSDEEGPQL WLAAAQRKDP EQAWLLQQQL ENSBTAP00000014066/1-779 NTCSVCASPL SYQEELDLEL DSSDEEGPRL WLAAAHRKGP EQEALLRQQL ENSTTRP00000015327/1-699 NKCSVCASPL SYQGELDLEL DSSDEDGPRL WLAAARRKGP EQEALLQQWL bmy_03371T0/1-519 ---------- --QGELDLEL ---------- ---------- ---------- BACU020415/1-702 NTCSVCASPL SYQGQLDLEL DSSDEDGPRL WLAAARRKGP EQEALLQQWL 751 800 ENSP00000357409/1-773 QEVLGRSLSM ESTSESSDLD EEKGPQQRKH -----GQQPL PEAHQPVSIL ENSBTAP00000014066/1-779 QEALGRTLSW DSMSESSDLD EEKGLRERRH RQGSEGRTPF PQGRSPLSLG ENSTTRP00000015327/1-699 QETLGRPLLS DSSSEF---- ---------- ---------- ---------- bmy_03371T0/1-519 ---------- ---------- ---------- ---------- ---------- BACU020415/1-702 QETLGRPLFS DSSSEFR--- ---------- ---------- ---------- 801 850 ENSP00000357409/1-773 TSPEPHRPPE TSSATKG-AP TPASEPSVPL SPPSLPDPSH PPPK ENSBTAP00000014066/1-779 AGANSSRAPS ASGPTKSNSH TPAPAPPAAV PPPPAPESAP PPPS ENSTTRP00000015327/1-699 ---------- ---------- ---------- ---------- ---- bmy_03371T0/1-519 ---------- ---------- ---------- ---------- ---- BACU020415/1-702 ---------- ---------- ---------- ---------- ----