KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:50:58 2014 Check: 00 .. Name: ENSP00000384144/1-999 Len: 1079 Check: 265 Weight: 1.00 Name: ENSBTAP00000013636/1-1002 Len: 1079 Check: 3631 Weight: 1.00 Name: BACU017334/1-957 Len: 1079 Check: 9430 Weight: 1.00 Name: ENSTTRP00000002805/1-996 Len: 1079 Check: 8469 Weight: 1.00 Name: bmy_03252T0/1-1041 Len: 1079 Check: 1327 Weight: 1.00 // 1 50 ENSP00000384144/1-999 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013636/1-1002 ---------- ---------- ---------- ---------- ---------- BACU017334/1-957 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002805/1-996 ---------- ---------- ---------- ---------- ---------- bmy_03252T0/1-1041 RGAGPGGGGS NERTPRPGPA GARDAAGRLV ANVTVCKPRG VVKGAGLRGA 51 100 ENSP00000384144/1-999 ---------- ---------- ------MADK VRRQRPRRRV CWALVAVLLA ENSBTAP00000013636/1-1002 ---------- ---------- ------MAAT VRRQRPRRLA CWALMTVLLA BACU017334/1-957 ---------- ---------- ------MGTR A--------- ----AAAAAG ENSTTRP00000002805/1-996 ---------- ---------- ------MAAT VRRQRPRRLA CWALMAVLLA bmy_03252T0/1-1041 LLASWVRPPP RFSQSWGHRS GGKRDTMAAT VRRQRPRRLA CWALMAVLLA 101 150 ENSP00000384144/1-999 DLLALSDTLA VMSVDLGSES MKVAIVKPGV PMEIVLNKES RRKTPVIVTL ENSBTAP00000013636/1-1002 DLLALSDTLA VMSVDLGSES MKVAIVKPGV PMEIVLNKES RRKTPVTVTL BACU017334/1-957 D----GDTLA VMSVDLGSES MKVAIVKPGV PMEIVLNKES RRKTPVTVTL ENSTTRP00000002805/1-996 DLLALSDTLA VMSVDLGSES MKVAIVKPGV PMEIVLNKES RRKTPVTVTL bmy_03252T0/1-1041 DLLALSDTLA VMSVDLGSES MKVAIVKPGV PMEIVLNKES RRKTPVTVTL 151 200 ENSP00000384144/1-999 KENERFFGDS AASMAIKNPK ATLRYFQHLL GKQADNPHVA LYQARFPEHE ENSBTAP00000013636/1-1002 KENERFFGDS AASMAIKNPK ATLRYFQHLL GKQENNPHVA LYKARFPEHE BACU017334/1-957 KENERFFGDS AASMAIKNPQ ATLRYFQHLL GKQENNPHVA LYRARFPEHE ENSTTRP00000002805/1-996 KENERFFGDS AASMAIKNPK ATLRYFQNLL GKQENNPHVA LYRARFPEHE bmy_03252T0/1-1041 KENERFFGDS AASMAIKNPK ATLRYFQHLL GKQENNPHVA LYRARFPEHE 201 250 ENSP00000384144/1-999 LTFDPQRQTV HFQISSQLQF SPEEVLGMVL NYSRSLAEDF AEQPIKDAVI ENSBTAP00000013636/1-1002 LGFDPQRQTV YFQISPQLQF SPEEVLSMLL NYSRSLAEDF AEQPIKDAVI BACU017334/1-957 LGFDPQRQTV YFQISPQLQF SPEEVLSMLL NYSRSLAEDF AEQPIKDAVI ENSTTRP00000002805/1-996 LGFDPQRQTV YFQISPQLQF SPEEVLSMLL NYSRSLAEDF AEQPIKDAVI bmy_03252T0/1-1041 LGFDPQRQTV YFQISPQLQF SPEEVLSMLL NYSRSLAEDF AEQPIKDAVI 251 300 ENSP00000384144/1-999 TVPVFFNQAE RRAVLQAARM AGLKVLQLIN DNTATALSYG VFRRKDINTT ENSBTAP00000013636/1-1002 TVPAFFNQAE RRAVLQAARM AGLKVLQLIN DNTATALSYG VFRRKDINST BACU017334/1-957 TVPAFFNQAE RRAVLQAARM AGLKVLQLIN DNTATALSYG VFRRKDINST ENSTTRP00000002805/1-996 TVPAFFNQAE RRAVLQAARM AGLKVLQLIN DNTATALSYG VFRRKDINST bmy_03252T0/1-1041 TVPPFFNQAE RRAVLQAARM AGLKVLQLIN DNTATALSYG VFRRKDINST 301 350 ENSP00000384144/1-999 AQNIMFYDMG SGSTVCTIVT YQMVKTKEAG MQPQLQIRGV GFDRTLGGLE ENSBTAP00000013636/1-1002 AQNIMFYDMG SGSTVCTIVT YQTVKTKDAG IQPQLQIRGV GFDRTLGGLE BACU017334/1-957 AQNIMFYDMG SGSTVCTIVT YQTVKTKDAG MQPQLQIRGV GFDRTLGGLE ENSTTRP00000002805/1-996 AQNIMFYDMG AGSTVCTIVT YQTVKTKDAG MQPQLQIRGV GFDRTLGGLE bmy_03252T0/1-1041 AQNIMFYDMG AGSTVCTIVT YQTVKTKDAG MQPQLQIRGV GFDRTLGGLE 351 400 ENSP00000384144/1-999 MELRLRERLA GLFNEQRKGQ RAKDVRENPR AMAKLLREAN RLKTVLSANA ENSBTAP00000013636/1-1002 MELRLREHLA RLFNEQRKGQ RAKDVRENPR AMAKLLREAN RLKTVLSANA BACU017334/1-957 MELRLREHLA GIFNEQRKGQ RAKDVRENPR AMAKLLREAN RLKTILSANA ENSTTRP00000002805/1-996 MELRLREHLA GIFNEQRKGQ RAKDVRENPR AMAKLLREAN RLKTILSANA bmy_03252T0/1-1041 MELRLREHLA GIFNEQRKGQ RAKDVRENPR AMAKLLREAS RLKTILSANA 401 450 ENSP00000384144/1-999 DHMAQIEGLM DDVDFKAKVT RVEFEELCAD LFERVPGPVQ QALQSAEMSL ENSBTAP00000013636/1-1002 DHMAQIEGLM DDVDFKAKVT RAEFEELCAD LFERVPGPVQ QALQSAEMKL BACU017334/1-957 DHMAQIEGLM DDVDFKAKVT RAEFEELCAD LFERVPGPVQ QALQSAEMKL ENSTTRP00000002805/1-996 DHMAQIEGLM DDVDFKAKVT RAE-EELCAD LFERVPGPVQ Q-LQSAEMKL bmy_03252T0/1-1041 DHMAQIEGLM DDVDFKAKVT RAEFEELCAD LFERVPGPVQ RALQSAEMKL 451 500 ENSP00000384144/1-999 DEIEQVILVG GATRVPRVQE VLLKAVGKEE LGKNINADEA AAMGAVYQAA ENSBTAP00000013636/1-1002 DEIEQVILVG GATRVPKVQE VLLKAVGKEE LGKNINADEA AAMGAVYQAA BACU017334/1-957 DEIEQVILVG GATRVPRVQE VLLKAVGKEE LGKNINADEA AAVGAVYQAA ENSTTRP00000002805/1-996 DEIEQVILVG GATRVPKVQE VLLKAVGKEE LGKNINADEA AAMGAVYQAA bmy_03252T0/1-1041 DEIEQVILVG GATRVPRVQE VLLKAVGKEE LGKNINADEA AAVGAVYQAA 501 550 ENSP00000384144/1-999 ALSKAFKVKP FVVRDAVVYP ILVEFTREVE EEPGIHSLKH NKRVLFSRMG ENSBTAP00000013636/1-1002 ALSKAFKVKP FVVRDAVIYP ILVEFTREVE EETGVRSLKH NKRVLFSRMG BACU017334/1-957 ALSKAFKVKP FVVRDAVIYP ILVEFTREVE EEPGVRSLKH NKRVLFGRMG ENSTTRP00000002805/1-996 ALSKAFKVKP FVVRDAAIYP ILVEFTREVE EEPGVRSLKH NKRVLFCRMG bmy_03252T0/1-1041 ALSKAFKVKP FVVRDAVIYP ILVEFTREVE EEPGVRSLKH NKRVLFGRMG 551 600 ENSP00000384144/1-999 PYPQRKVITF NRYSHDFNFH INYGDLGFLG PEDLRVFGSQ NLTTVKLKGV ENSBTAP00000013636/1-1002 PYPQRKVITF NRYSHDFNFH INYGDLGFLG PEDLRVFGSQ NLTTVKLKGV BACU017334/1-957 PYPQRKVITF NRYNHDFDFH INYGDLGFLG PEDLRVFGSQ NLTTVKLKGV ENSTTRP00000002805/1-996 PYPQRKVITF NRYNHDFSFH INYGDLGFLG PEDLRVFGSQ NLTTVKLKGV bmy_03252T0/1-1041 PYPQRKVITF NRYNHDFDFH INYGDLGFLG PEDLRVFGSQ NLTTVKLKGV 601 650 ENSP00000384144/1-999 GDSFKKYPDY ESKGIKAHFN LDESGVLSLD RVESVFETLV EDSAEEESTL ENSBTAP00000013636/1-1002 GESFKKYPDY ESKGIKAHFN LDESGVLSLD RVESVFETLV EDSPEEESTL BACU017334/1-957 GESFRKYPDY ESKGIKAHFN LDESGVLSLD RVEAVFETLV EDSPEEESTL ENSTTRP00000002805/1-996 GESFKKYPDY ESKGIKAHFN LDESGVLSLD RVESVFETLV EDSPEEESTL bmy_03252T0/1-1041 GESFKKYPDY ESKGIKAHFN LDESGVLSLD RVEAVFETLV EDSPEEESTL 651 700 ENSP00000384144/1-999 TKLGNTISSL FGGGTTPDAK ENGTDTVQEE EESPAEGSKD EPGEQVELKE ENSBTAP00000013636/1-1002 TKLGNTISSL FGGGSTPDTK ENGTDTVQEE EEGPAEGSKD EPGEQAELKE BACU017334/1-957 TKLGNTISSL FGGGTTQDTK ENGTDTVQEE EEGPAEGSKA EPGEQAELRE ENSTTRP00000002805/1-996 TKLGNTISSL FGGGAAQDTK ENGTDTVQEE EEGPAEGSKA EPGEQAEPRE bmy_03252T0/1-1041 TKLGNTISSL FGGGTTQDTK ENGTETVQEE EEGPAEGSKA EPGEQAELRE 701 750 ENSP00000384144/1-999 EAEAPVEDGS QPPPPEPKGD ATPEGEKATE KENGDKSEAQ KPSEKAEAGP ENSBTAP00000013636/1-1002 EAEAPAEDTS SPPPPEAKGA AAPEGEKAAE KDGGDKPEAQ KPSEKREAGS BACU017334/1-957 EAEAPTEDTS PPPPPEPKGD AAPEGEEAAE KDNGEKPEAQ KPSEKGEAGA ENSTTRP00000002805/1-996 EAEAPTEDTS PPPPPEPKGD AAPEGEKAAE KDNGEKPEAQ KPSEKGEAGA bmy_03252T0/1-1041 EAEAPTEDTS PPPPPEPKGD AAAEGEEAAE KDNGEKPEAQ KPSEKGEAGA 751 800 ENSP00000384144/1-999 EGVAPAPEGE KKQKPARKRR MVEEIGVELV VLDLPDLPED KLAQSVQKLQ ENSBTAP00000013636/1-1002 EGAPPAPEEE KKQKPARKQR MVEEIGVELV VLDLPDLPED QLARSAQKLQ BACU017334/1-957 EGVPPAPEEE KKQKPARKQR MVEEIGVELV VLDLPDLRQD ELARSAQKLQ ENSTTRP00000002805/1-996 EGVPPAPEEE KKQKPARKQR MVEEIGVELV VLDLPDLRQD ELARSAQKLQ bmy_03252T0/1-1041 EGVPPAPEEE KKHKPARKQR MVEEIGVELV VLDLPDLRQD ELARSAQKLQ 801 850 ENSP00000384144/1-999 DLTLRDLEKQ EREKAANSLE AFIFETQDKL YQPEYQEVST EEQREEISGK ENSBTAP00000013636/1-1002 DLTLRDLQKQ EREKAANSLE AFIFETQDKL YQPEYQEVST EEQREDISGK BACU017334/1-957 DLTLRDLEKQ EREKAANSLE AFIFETQDKL YQPEYQEVST EEQREDISGR ENSTTRP00000002805/1-996 DLTLRDLEKQ EREKAANSLE AFIFETQDKL YQPEYQEVST EEQREDISGR bmy_03252T0/1-1041 DLTLRDLEKQ EREKAANSLE AFIFETQDKL YQPEYQEVST EEQREDISGR 851 900 ENSP00000384144/1-999 LSAASTWLED EGVGATTVML KEKLAELRKL CQGLFFRVEE RKKWPERLSA ENSBTAP00000013636/1-1002 LSATSTWLED EGFGATTAML KEKLAELRKL CHGLFFRVEE RKKWPERLSA BACU017334/1-957 LRAASTWLED EGFGATTVML KEKLTELRKL CQGLFFRVEE RRKWPERLSA ENSTTRP00000002805/1-996 LHAASTWLED EGFGATTVML KEKLAELRKL CQGLFFRVEE RKKWPERLSA bmy_03252T0/1-1041 LRAASTWLED EGFGATTVML KEKLTELRKL CQGLFFRVEE RKKWPERLSA 901 950 ENSP00000384144/1-999 LDNLLNHSSM FLKGARLIPE MDQIFTEVEM TTLEKVINET WAWKNATLAE ENSBTAP00000013636/1-1002 LDNLLNHSSM FLKGARLIPE MDQIFTEVEM TTLEKIINET WAWKNTTVAE BACU017334/1-957 LDNLLNHSSM FLTGARLIPE MDQIFTEVEM TTLEKVINET WAWKNATVAE ENSTTRP00000002805/1-996 LDNLLNHSSM FLTGARLIPE MDQIFTEVEM TTLEKVINET WAWKNATVAE bmy_03252T0/1-1041 LDNLLNHSSM FLTGARLIPE MDQIFTEVEM TTLEKVINET WAWKNATVAE 951 1000 ENSP00000384144/1-999 QAKLPATEKP VLLSKDIEAK MMALDREVQY LLNKAKFTKP RPRPKDKNGT ENSBTAP00000013636/1-1002 QAKLPATEKP VLLSKDIEAK MAALDREVQY LLNKAKFAKP RPRPRDKNGT BACU017334/1-957 QAKLPATEKP VLLSKDIEAK MMALDREVQY LLNKAKFAKP RPRPKDKNGT ENSTTRP00000002805/1-996 QAKLPATEKP VLLSKDIEAK MMALDREVQY LLNKAKFAKP RPRPKDKNGT bmy_03252T0/1-1041 QAKLPATEKP VLLSKDIEAK MMALDREVQY LLNKAKFAKP RPRPKDKNGT 1001 1050 ENSP00000384144/1-999 RAEPPLNASA SDQGEKVIPP AGQTEDAEPI SEPEKVETGS EPGDTEPLEL ENSBTAP00000013636/1-1002 RAEAPLNAST SDQSEKVIPP PGQTEDTKPI PEPEKETAGP EAADSEPLEL BACU017334/1-957 RAEPPLNASA SDQGDKVIRP AGQTDDAKPI ---------- ---------- ENSTTRP00000002805/1-996 RAEPPLNASA SDQGDKVIPP AGQTEDAKPI SEPEQ-ETRS EPADSEPLEL bmy_03252T0/1-1041 RAEPPLNASA SDQGDKVIPP ---------- ---------- ---------- 1051 1100 ENSP00000384144/1-999 GGPGAEPEQK ---EQSTGQK RPLKNDEL- ENSBTAP00000013636/1-1002 GGPAAESEQK EHLEQPTGQK RTLKNDEL- BACU017334/1-957 ----SEPEQE ---TRELG-- KLIGNMGIA ENSTTRP00000002805/1-996 GGPAAESEQK ---EQPTGQK PTLKNDEL- bmy_03252T0/1-1041 ----AESEQK ---EQPTGQK PTLKNDEL-