KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:48:33 2014 Check: 00 .. Name: ENSTTRP00000013845/1-344 Len: 452 Check: 4970 Weight: 1.00 Name: ENSP00000326652/1-344 Len: 452 Check: 6394 Weight: 1.00 Name: ENSBTAP00000013015/1-345 Len: 452 Check: 6571 Weight: 1.00 Name: bmy_14116T0/1-420 Len: 452 Check: 321 Weight: 1.00 // 1 50 ENSTTRP00000013845/1-344 MLSSVPHRKT WNKSKKAAKV TRSYPTFPSL NAWEEFRGLF PVDREPNPGV ENSP00000326652/1-344 MLSSFPHRKT WRKSKKTVKV TRSYPTFPSL NAWEEFRGLL PVDGEPNPGA ENSBTAP00000013015/1-345 MLSSVPHRKT WNKSKKTVKV TRSYPTFPSL NAWEEFRGLF PVDGEPNPGV bmy_14116T0/1-420 MLSSVPHRKT WNKSKKTVKV TRSYPTFPSL NAWEEFRGLF PVDREPNPGV 51 100 ENSTTRP00000013845/1-344 GLGVEEALLC QRVHSPEFNL FPESVVFESN FVQVKKSR-- ---------- ENSP00000326652/1-344 GLGVEEGLLC RVVHSPEFNL FLDSVVFESN FIQVKRGR-- ---------- ENSBTAP00000013015/1-345 GLGVEEGLLG QMVHSPEFNL FPESVVFESN FVQVRKGR-- ---------- bmy_14116T0/1-420 GLGVEEGLLC QMVHSPEFNL FPESVVFESN FVQVLLGRSE WHSLIPLNLF 101 150 ENSTTRP00000013845/1-344 ---------- ----NWIGIY KASNTMALGV TSSVPCLPLP NILFMANVKW ENSP00000326652/1-344 ---------- ----NWRDVY KASNTMALGV TSSVPCLPLP NILLMASVKW ENSBTAP00000013015/1-345 ---------- ----DWIDIY KTYNTMALGV TSSVPCLPLP NILLMASVKW bmy_14116T0/1-420 PQCDGESVPG TGVENWIDIY KASNTTALGV TSSVPCLPLP NILFMASVKW 151 200 ENSTTRP00000013845/1-344 HHGQSQTWNQ PTTAPKIILK RILPLKFVEL QVCDRFQRVL RLRTVTEKIY ENSP00000326652/1-344 HQGQNQTWNR PSIAPNIFLK RILPLRFVEL QVCDHYQRIL QLRTVTEKIY ENSBTAP00000013015/1-345 HHGQNQTWNK PSTAPKIILK RILPLKFVEL QVSDHLQRVL RLRTVTEKIY bmy_14116T0/1-420 HHGQSQTWNQ PTTAPKIILK RILPLKFVEL QVCDRFQRIL RLRTVTEKIY 201 250 ENSTTRP00000013845/1-344 YLRLHPDHPQ TVFHFWIRLV QILQKGLSIT TKDPRILVTH CLVPKNSCSP ENSP00000326652/1-344 YLKLHPDHPE TVFHFWIRLV QILQKGLSIT TKDPRILVTH CLVPKNCSSP ENSBTAP00000013015/1-345 YLKLHPDHPK TVFHFWIRLI QILQKGLSIT TKDPRILVTH CLVPKNSCSP bmy_14116T0/1-420 YLRLHPDHPE TVFRFWIRLV QILQKGLSIT TKDPRILVTH CLVPKNSCSP 251 300 ENSTTRP00000013845/1-344 SGDSQLVQKK LQASQPSESL TQLMAKGESE ALSQTFADLH QHNQFSSRSS ENSP00000326652/1-344 SGDSKLVQKK LQASQPSESL IQLMTKGESE ALSQIFADLH QQNQLSFRSS ENSBTAP00000013015/1-345 SGDSQLVQKK PQASQPSESL MQLMAKGESE ALCQIFVDLH QHNLFSSRSS bmy_14116T0/1-420 SRDSQLVQKK LQASQPSESL TQLMAKGESE ALSQIFADLH QHNQFS---- 301 350 ENSTTRP00000013845/1-344 RKTEKKKDSP XXXXX-XXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000326652/1-344 RKVETNKNSS GKDSS-REDS IPCTCDLRWR ASFTYGEWER ENPSGLQPLS ENSBTAP00000013015/1-345 KKTENKKDSS GKKTSPSEDS IPCTRDLSWR DSFTYGEWER ENPSGPQSLS bmy_14116T0/1-420 ---------- ---------- --------WR ESFTYGEWER ENPSGPQPLS 351 400 ENSTTRP00000013845/1-344 XXXXXXXXXX XXXXXXXXSS I--------- ---------- ---------- ENSP00000326652/1-344 LLSTLAASTG PQLAPPIGNS I--------- ---------- ---------- ENSBTAP00000013015/1-345 LLSTLAASTG PQLAPLIGSS I--------- ---------- ---------- bmy_14116T0/1-420 LLSTLAASTG PRLAPLIGTH TSPPFQHKKT CSQKNQDHDG EKEGKRTRTR 401 450 ENSTTRP00000013845/1-344 ---------- ---------- ---------- ---------- ---------- ENSP00000326652/1-344 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013015/1-345 ---------- ---------- ---------- ---------- ---------- bmy_14116T0/1-420 GEVEENKTGV KRNVEGGNQR RGKMQKSGDR KKQKRGQEKY TSERGLTELL 451 500 ENSTTRP00000013845/1-344 -- ENSP00000326652/1-344 -- ENSBTAP00000013015/1-345 -- bmy_14116T0/1-420 FI