KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:48:09 2014 Check: 00 .. Name: ENSBTAP00000012855/1-582 Len: 817 Check: 4769 Weight: 1.00 Name: ENSTTRP00000005091/1-581 Len: 817 Check: 4820 Weight: 1.00 Name: BACU017346/1-813 Len: 817 Check: 3904 Weight: 1.00 Name: bmy_03236T0/1-479 Len: 817 Check: 3409 Weight: 1.00 // 1 50 ENSBTAP00000012855/1-582 MKDCSDIVLC VETTELSKTE FCNPAFEPES GPPCPFPALR EDADCSAPAP ENSTTRP00000005091/1-581 MKDCSDIILC VEATELSKTE FCNPAFEPES GPPCPLPSLQ EDASCSTRAP BACU017346/1-813 MKDCSDIILC VEATELSKTE FCNPAFEPES GPPCPLPSLQ EDASCSTRAP bmy_03236T0/1-479 MKDCSDIILC VEATELSKTE FCNPAFEPES GPPCPLPSLQ EDASCSTRAP 51 100 ENSBTAP00000012855/1-582 WHGRHPRRLQ PDCRFSWLCV LLLAGLLLLL LGLLVAIILA QLQATTSPGA ENSTTRP00000005091/1-581 WHGRRPRGLQ PDCHFSWLCV LLLASLLLLL LGLLVAIILA QLQATAASGP BACU017346/1-813 WHGRRPRGLQ PDCHFSWLCV LLLASLLLLL LGLLVAIILA QLQATPVSGA bmy_03236T0/1-479 WHGRRPRGLQ PDCHFSWLCV LLLASLLLLL LGLLVAIILA QLQATPASGA 101 150 ENSBTAP00000012855/1-582 TYHPLPSRGL ATTGTTPATS TTTSQATGTP KGQPEAG--V SLAPQSACGG ENSTTRP00000005091/1-581 SHHPLPSQGL TTIGSTPTPI PTTSQATGTP KGQPEAG--V SPAPQSTCGG BACU017346/1-813 SHYPLPSQGL TTIGSSPTPI PTTSQATGTP KGQPEAGMSM SPAPQSACGG bmy_03236T0/1-479 SHHPLPSQGL TTVGSSPTPI PTTSQATGTP KGQPEAG--M SPAPQSACGG 151 200 ENSBTAP00000012855/1-582 LLPGPRGFFS SPNYPDPYPP NAHCVWHIQV ATDHTIQLKI ETLSTESVAS ENSTTRP00000005091/1-581 LLPGPRGFFS SPDYPDPYPP NAHCVWHIQV ATDHAIQLKI EALSVESVAS BACU017346/1-813 LLPGPRGFFS SPDYPDPYPP NAHCVWHIQV ATDHAIQLKI EALSVESVAS bmy_03236T0/1-479 LLPGPRGFFS SPDYPDPYPP NAHCVWHIQV ATDHAIQLKI EALSVESVAS 201 250 ENSBTAP00000012855/1-582 CLFDRLEISP EPEGPLLRVC GRVPPPTLNT NASRLRVAFV SDSSVEGSGF ENSTTRP00000005091/1-581 CLFDRLEISP EPEGPLLRVC GRVPPPTLNT NASHLRVAFV SDSSVEGSGF BACU017346/1-813 CLFDRLEISP EPEGPLLRVC GRVPPPTLNT NASHLRVAFV SDSSVEGSGF bmy_03236T0/1-479 CLFDRLEISP EPEGPLLRVC GRVPPPTLNT NASHLRVAFV SDSSVEGSGF 251 300 ENSBTAP00000012855/1-582 HAWYQAVAPG HGSCAHEEFP CDQFVCLLRD SVCDGFANCA DGSDEINCSA ENSTTRP00000005091/1-581 HAWYQAVAPG HGSCAHDEFP CDQLVCLLPD SVCDGFASCA DGSDEANCSA BACU017346/1-813 HAWYQAVAPG HGSCAHDEFP CDQLVCLLPD SVCDGFASCA DGSDEANCSA bmy_03236T0/1-479 HAWYQAVAPG HGSCAHDEFP CDQLVCLLPD SVCDGFASCA DGSDEANCSA 301 350 ENSBTAP00000012855/1-582 KFSGCGGNLT GLEGTFSAPS YLQQYPHQQL CTWHISVPAG HGIELLFHNF ENSTTRP00000005091/1-581 KFSGCGGNLT GLQGTFSAPS YLQQYPHQQL CTWHISVPAG HGVELLFHNF BACU017346/1-813 KFSGCGGDLT GLQGTFSAPS YPQQYPHQQL CTWHISVPAG HGIELLFHNF bmy_03236T0/1-479 KFSGCGGNLT GLQGTFSAPS YLQQYPHQQL CTWHISVPAG HGIELLFHNF 351 400 ENSBTAP00000012855/1-582 SLEAQDECKS DYVEVYEAHS SGALSLLDRF CGAEPPPRLI SSRHQLAVLF ENSTTRP00000005091/1-581 SLEAQDECKF DYVEVYETRN SGALSLLGRF CGAEPPPRLI SSHHQLAVLF BACU017346/1-813 SLEAQDECKF DYVEVYETRN SGALSLLGRF CGAEPPPRLI SSHHQLAVLF bmy_03236T0/1-479 SLEAQDECKF DYVEVYETRN SGALSLLGRF CGAEPPPRLI SSHHQLAVLF 401 450 ENSBTAP00000012855/1-582 RTDHGFSAGG FSATYRALNA TESRWPWALG PGELSCQDGG CKSPQWMCST ENSTTRP00000005091/1-581 RTEHGISIGG FSATYRALNA TEN----PCG PGEFSCRDGG CKNLQWMCGM BACU017346/1-813 RTDRGISIGG FSATYRALNA TEN----PCG PGEFSCRDGG CTNLQWMCGM bmy_03236T0/1-479 RTDHGISIGG FSATYRALNA TEN----PCG PGEFSCRDGG CKNLQWMCGM 451 500 ENSBTAP00000012855/1-582 WRDCA---DD NCSSPLFPPP ELACEPVQVE MCIGLSYNTT AFPNIWVGMT ENSTTRP00000005091/1-581 WRDCTESSDD NCSIPLLPPP ELACEPVQVE MCIGLSYNTT AFPNIWVGMA BACU017346/1-813 WRDCAESSDD NCSSPLLPPP ELACEPVQVE MCIGLSYNTT AFPNIWVGMA bmy_03236T0/1-479 WRDCAESSDD NCSIPLLPPP ---------- ---------- ---------- 501 550 ENSBTAP00000012855/1-582 TQEEVVEVLR GYKSLTSLP- ---CYQNFRR LLCGLLVPHC TPLGSVLPPC ENSTTRP00000005091/1-581 TQEEVVEVLR GYKSLTSLP- ---CYQNFRR LLCGLLVPHC TPLGSVLPPC BACU017346/1-813 TQEEVVEVLR GYKLLGAVDA LSVCFSWFCL SVPASNLSLL SPPNFGWPPG bmy_03236T0/1-479 ---------- ---------- ---------- ---------- ---------- 551 600 ENSBTAP00000012855/1-582 RS-------- ---------- ---------- ---------- ---------- ENSTTRP00000005091/1-581 RS-------- ---------- ---------- ---------- ---------- BACU017346/1-813 DTTSYFPAIS RPGLLAPEQL VSSWSLGGAE QSRQGTNRDQ GDAEGRGRLA bmy_03236T0/1-479 ---------- ---------- ---------- ---------- ---------- 601 650 ENSBTAP00000012855/1-582 ---------- ---------- ---------- --VCQEAERQ CQSGLALLG- ENSTTRP00000005091/1-581 ---------- ---------- ---------- --VCQEAERQ CQSGLALLG- BACU017346/1-813 REKRREGSQG LPGRDGRDGR DGAPGAPGEK GEGGRPGKKR LRWEAGLPGP bmy_03236T0/1-479 ---------- ---------- ---------- --GEEPAPGH CRWG------ 651 700 ENSBTAP00000012855/1-582 ---------- ---------- ---------- ---------- ----TPWPFN ENSTTRP00000005091/1-581 ---------- ---------- ---------- ---------- ----TPWPFN BACU017346/1-813 RGEPGPRGEA GPVGAAGPAG ECSVPPRSAF SAKRSESRVP PPSDAPLPFD bmy_03236T0/1-479 ---------- ---------- ---------- ---------- ------WQA- 701 750 ENSBTAP00000012855/1-582 CNRLPEAAGL EACAQP---- ---------- ---------- ---------- ENSTTRP00000005091/1-581 CNRLPEAAGL EACAQP---- ---------- ---------- ---------- BACU017346/1-813 RVLVNEQGHY DAVTGKFTCQ VPGVYYFAVH ATVYRASLQF DLVKNGESIA bmy_03236T0/1-479 ---------- ---------- ---------- ---------- ---------- 751 800 ENSBTAP00000012855/1-582 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005091/1-581 ---------- ---------- ---------- ---------- ---------- BACU017346/1-813 SFFQFFGGWP KPASLSGGAM VRLEPKDQVW VQVGVGDYIG IYASIKTDST bmy_03236T0/1-479 ---------- ---------- ---------- ---------- ---------- 801 850 ENSBTAP00000012855/1-582 ---------- ------- ENSTTRP00000005091/1-581 ---------- ------- BACU017346/1-813 FSGFLVYSDW HNSPVFA bmy_03236T0/1-479 ---------- -------