KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:47:08 2014 Check: 00 .. Name: ENSP00000270233/1-628 Len: 628 Check: 910 Weight: 1.00 Name: ENSBTAP00000012495/1-628 Len: 628 Check: 9198 Weight: 1.00 Name: ENSTTRP00000007522/1-628 Len: 628 Check: 3886 Weight: 1.00 Name: bmy_15577T0/1-486 Len: 628 Check: 6308 Weight: 1.00 Name: BACU018218/1-616 Len: 628 Check: 9025 Weight: 1.00 // 1 50 ENSP00000270233/1-628 MEPPDAPAQA RGAPRLLLLA VLLAAHPDAQ AEVRLSVPPL VEVMRGKSVI ENSBTAP00000012495/1-628 MEPPDARAGA RRAPRLLVLA LLLAAPPGSK AEVRLSVPPL VEVMRGESVT ENSTTRP00000007522/1-628 MEPPDARAGA RRGPRLLVLA LLLGAHRGAK AEVRLSVPPL VEVMRGEPVT bmy_15577T0/1-486 MEPPDARAGA RRAPRLLVFA LLLGAHP--- ---------- ---------- BACU018218/1-616 ---------- -XAPRLLVFA LLLGAHPGAK AEVRLSVPPL VEVMRGEPVT 51 100 ENSP00000270233/1-628 LDCTPTGTHD HYMLEWFLTD RSGARPRLAS AEMQGSELQV TMHDTRGRSP ENSBTAP00000012495/1-628 LDCSPLGTHD YFMLEWFLVD RSGARHRLAS AELRGSELRD KELNSRGRSP ENSTTRP00000007522/1-628 LDCTPLGAHD HFVLEWFLAD RAGVRRRLAS AELHGTELQD KVHDSQSRSP bmy_15577T0/1-486 ---------- ---------- ---------- ---------- ---------- BACU018218/1-616 LDCTPLGAHD HFVLEWFLAD RSGVRHRLAS AELHGTELQD KVHDSRGRSP 101 150 ENSP00000270233/1-628 PYQLDSQGRL VLAEAQVGDE RDYVCVVRAG AAGTAEATAR LNVFAKPEAT ENSBTAP00000012495/1-628 PYQLDSQGRL VLPEAQVGDE RDYVCVVKAG AAGTAEATAR LKVFAKPEAP ENSTTRP00000007522/1-628 PYQLDSRGRL VLAEAQVGDE RDYVCLVKAG AAGTAEATAR LSVFAKPEAT bmy_15577T0/1-486 ---------- ---------- ---------- ---------- ---------- BACU018218/1-616 PYQLDSRGRL VLAEAQVGDE RDYVCLVRAG AAGTAEATAR LNVFAKPEAT 151 200 ENSP00000270233/1-628 EVSPNKGTLS VMEDSAQEIA TCNSRNGNPA PKITWYRNGQ RLEVPVEMNP ENSBTAP00000012495/1-628 EVSPNKGILS VMDDFAQEIA TCSSRNGNPA PQIMWYRNGQ PLAVPLEVNS ENSTTRP00000007522/1-628 EVSPNRGTLS VMEDFAQEIA TCNSRNGNPA PQITWYRNGQ RLEVPMEVNS bmy_15577T0/1-486 ---------- ---------A TCNSRNGNPA PQITWYRNGQ RLEVPMEVNS BACU018218/1-616 EVSPNRGTLS VMEDFAQEIA TCNSRNGNPA PQITWYRNGQ RLEVPMEVNS 201 250 ENSP00000270233/1-628 EGYMTSRTVR EASGLLSLTS TLYLRLRKDD RDASFHCAAH YSLPEGRHGR ENSBTAP00000012495/1-628 EGYMTTRTVR EASGLLSLTS TLYLRLHKPD REASFHCSVH YYLPAGQHGR ENSTTRP00000007522/1-628 EGYMTSRTVR EASGLLSLTS TLYLRLHKAD RDASFHCSVH YRLPTGRHGR bmy_15577T0/1-486 EGYMTSRTVR EASGLLSLTS TLYLRLHKAD RDASFHCSVH YRLPTGRHGR BACU018218/1-616 EGYMTSRTVR EASGLLSLTS TLYLRLHKAD RDASFHCSVH YRLPTGRHGR 251 300 ENSP00000270233/1-628 LDSPTFHLTL HYPTEHVQFW VGSPSTPAGW VREGDTVQLL CRGDGSPSPE ENSBTAP00000012495/1-628 LDGPSFSLTL HYPTEHVLFW LGSQSTAEGW VREGDSVQLL CQGDGSPTPE ENSTTRP00000007522/1-628 LDSPSFHLTL HYPTEHVQFW LGSPSTTAGW VREGDSVQLF CRGDGSPNPE bmy_15577T0/1-486 LDSPSFRLTL HYPTEHVQFW LGSPSTTAGW VREGDSVQLF CRGDGSPNPE BACU018218/1-616 LDSPSFRLTL HYPTEHVQFW LGSPSTTAGW VREGDSVQLF CRGDGSPNPE 301 350 ENSP00000270233/1-628 YTLFRLQDEQ EEVLNVNLEG NLTLEGVTRG QSGTYGCRVE DYDAADDVQL ENSBTAP00000012495/1-628 YTFFWLQDKQ EDVLKTSLEG NLTLERVQRN QSGTYGCRVE DFDVPEDAEL ENSTTRP00000007522/1-628 YTFFRLQDKQ EDVLKTNLEG NLTLEGVQRS QSGTYGCRVE DYDAAEDAEL bmy_15577T0/1-486 YTFFRLQDKQ EDVLKTNLEG NLTLEGVQRS QSGTYGCRVE DYDAAEDAEL BACU018218/1-616 YTFFRLQDKQ EDVLKTNLEG NLTLEGVQRS QSGTYGCRVE DYDAAEDAEL 351 400 ENSP00000270233/1-628 SKTLELRVAY LDPLELSEGK VLSLPLNSSA VVNCSVHGLP TPALRWTKDS ENSBTAP00000012495/1-628 SKTLELRVAY LDSLELSAGE ELSLPLHNST TVTCSARGLP TPTLYWTKDS ENSTTRP00000007522/1-628 SKTLELHVAY LDPLELSTGE ELSLPLGNST DVNCSVRGLP TPALRWTKDS bmy_15577T0/1-486 SKTLELHVAY LDPLELSTGE ELSLPLGNST TLTCSVRGLP APALRWTKDS BACU018218/1-616 SKTLELHVAY LDPLELSTGE ELSLPLGNST TVNCSVRGLP TPALRWTKDS 401 450 ENSP00000270233/1-628 TPLGDGPMLS LSSITFDSNG TYVCEASLPT VPVLSRTQNF TLLVQGSPEL ENSBTAP00000012495/1-628 APMGEDPTLS LHSVTFDSAG TYTCEAYMPR IPLLSRTRSF RLLVQGTPEL ENSTTRP00000007522/1-628 VPLGDSPTLS LRSVTFDSAG TYTCEASMPT VPVLSRTRSF ELLVQGPPEL bmy_15577T0/1-486 VPLGDSPTLS LRSITFDSAG TYTCEASMPT VPVLSRTRSF KLLVQGPPEL BACU018218/1-616 VPLGDNPTLS LRSITFDSAG TYTCEASMPT VPVLSRTRSF KLLVQGPPEL 451 500 ENSP00000270233/1-628 KTAEIEPKAD GSWREGDEVT LICSARGHPD PKLSWSQLGG SPAEPIPGRQ ENSBTAP00000012495/1-628 KAKETQPKAE GSWTEGDEVT LICYARGYPK PKLTWSQLGG SPTEPAPGGQ ENSTTRP00000007522/1-628 RAEETQPKAE GGWREGSEVR LTCYARGYPE PKLSWSQLGG SLAEPAPGGQ bmy_15577T0/1-486 RAEETQPKAE GSWREGDEVR LICYARGYPE PKLSWNQLGG SLAEPAPGGQ BACU018218/1-616 RAEETQPKAE GSWREGDEVR LICYARGYPE PKLSWSQLGG SIREPAPGGQ 501 550 ENSP00000270233/1-628 GWVSSSLTLK VTSALSRDGI SCEASNPHGN KRHVFHFGTV SPQTSQAGVA ENSBTAP00000012495/1-628 GWVSSSLTLK VTSALSQDGV SCEASNPLGN THHVFHFGTV APQTSQAGVA ENSTTRP00000007522/1-628 GWVSSSLTLK VTSALSRDGV SCEASNPYGS DRHVFHFGTV APQTSQAGVA bmy_15577T0/1-486 GWVSSSLTLK VTSALSRDGI SCEASNPYGN DRHVFHFGTV APQTSQAGVA BACU018218/1-616 GWVSSSLTLK VTSALSRDGI SCEASNPYGN DRHVFHFGTV APQTSQAGVA 551 600 ENSP00000270233/1-628 VMAVAVSVGL LLLVVAVFYC VRRKGGPCCR QRREKGAPPP GEPGLSHSGS ENSBTAP00000012495/1-628 VMAVAISVAL LLLVVAVFYC MRRKGRPGCC QWGEKGSPPP GEPKLSHSGS ENSTTRP00000007522/1-628 VMAVAVSVGL LLFIVAXXXX XXXXXXXXXX XXXXXXXXPP GEPELSHSGS bmy_15577T0/1-486 VMAVAISVGL LLFVVAAFYC MRRKGQPGCC RRGEKGSPPP GEPELSHSGS BACU018218/1-616 VMAVAVSVGV LLFVVAAFYC MRRKGQPGCC RRGEKGSPPP GEPELSHSGS 601 650 ENSP00000270233/1-628 EQPEQTGLLM GGASGGARGG SGGFGDEC ENSBTAP00000012495/1-628 QRPEQTGLLM GSASGGAKHG SGGFGDEC ENSTTRP00000007522/1-628 ERPEQTGLLV GGASGGARHG SRGFGDEC bmy_15577T0/1-486 ERPEQTGLLV GGASGGARHG SRGFGDEC BACU018218/1-616 ERPEQTGLLV GSASGGARHG SRGFGDE-