KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:46:41 2014 Check: 00 .. Name: ENSTTRP00000001100/1-412 Len: 671 Check: 9460 Weight: 1.00 Name: ENSP00000263083/1-443 Len: 671 Check: 966 Weight: 1.00 Name: ENSBTAP00000012340/1-438 Len: 671 Check: 5382 Weight: 1.00 Name: bmy_00182T0/1-666 Len: 671 Check: 3973 Weight: 1.00 Name: BACU006970/1-619 Len: 671 Check: 1217 Weight: 1.00 // 1 50 ENSTTRP00000001100/1-412 ---------- ---------- ------RAPR GRLANQIPAE ILNNPQLQAA ENSP00000263083/1-443 MRRQVMAALV VSGAAEQGGR DGPGRGRAPR GRVANQIPPE ILKNPQLQAA ENSBTAP00000012340/1-438 -----MAALV AAEAAESCSR NGPGRGRAPR GRLANQIPAE ILNNPQLQAA bmy_00182T0/1-666 -----MAALV AAEATESGSR NGPGRGRAPR GRLANQIPPE ILNNPQLQAA BACU006970/1-619 -----MAALV AAEATESGSR NGPGRGRAPR GRLANQIPPE ILNNPQLQAA 51 100 ENSTTRP00000001100/1-412 IQVLPSNYNF EIPKTIWRIQ QAQAKKVALQ MPEGLLLFAC TIVDILERFT ENSP00000263083/1-443 IRVLPSNYNF EIPKTIWRIQ QAQAKKVALQ MPEGLLLFAC TIVDILERFT ENSBTAP00000012340/1-438 IQVLPSNYNF EVPKTIWRIQ QAQAKKVALQ MPEGLLLFAC TIVDILERFT bmy_00182T0/1-666 IQVLPSNYNF EIPKTIWRIQ QAQAKKVALQ MPEGLLLFAC TIVDILERFT BACU006970/1-619 IQVLPSNYNF EIPKTIWRIQ QAQAKKVALQ MPEGLLLFAC TIVDILERFT 101 150 ENSTTRP00000001100/1-412 EAEVMVMGDV TYGACCVDDF TARALGADFL VHYGHSCLVP MDTSAQDFRV ENSP00000263083/1-443 EAEVMVMGDV TYGACCVDDF TARALGADFL VHYGHSCLIP MDTSAQDFRV ENSBTAP00000012340/1-438 EAEVMVMGDV TYGACCVDDF TARALGADFL VHYGHSCLVP MDTSAQDFRV bmy_00182T0/1-666 EAEVMVMGDV TYGACCVDDF TARALGADFL VHYGHSCLVP MDTSAQDFRV BACU006970/1-619 EAEVMVMGDV TYGACCVDDF TARALGADFL VHYGHSCLVP MDTSAQDFRV 151 200 ENSTTRP00000001100/1-412 LYVFVDIRID TTHLLDSIRL TFPPASALAL VSTIQFVSTL QAAAQELKAE ENSP00000263083/1-443 LYVFVDIRID TTHLLDSLRL TFPPATALAL VSTIQFVSTL QAAAQELKAE ENSBTAP00000012340/1-438 LYVFVDIRID TAHLLDSIRL TFPPASALAL VSTIQFVSTL QAAAQELKAE bmy_00182T0/1-666 LYVFVDIRID TAHLLDSIRL TFPPASALAL VSTIQFVSTL QAAAQELKAE BACU006970/1-619 LYVFVDIRID TAHLLDSIRL TFPPASALAL VSTIQFVSTL QAAAQELKAE 201 250 ENSTTRP00000001100/1-412 YRVSVPQCKP LSPGEILGCT SPHLPKEVEA VVXXXXXXXX XXXXXXXXXX ENSP00000263083/1-443 YRVSVPQCKP LSPGEILGCT SPRLSKEVEA VVYLGDGRFH LESVMIANPN ENSBTAP00000012340/1-438 YRVSVPQCKP LSPGEILGCT SPCLPKEVEA VVYLGDGRFH LESVMIANPN bmy_00182T0/1-666 YRVSVPQCKP LSPGEILGCT SPRLPKEVEA VVYLGDGRFH LESVMIANPS BACU006970/1-619 YRVSVPQCKP LSPGEILGCT SPRLPKEVEA VVYLGDGRFH LESVMIANPN 251 300 ENSTTRP00000001100/1-412 XXXXXXXXXX XXXXXXQYDC QRMQPR---- -AIAASAKSW GLILGTLGRQ ENSP00000263083/1-443 VPAYRYDPYS KVLSREHYDH QRMQAARQEA IATARSAKSW GLILGTLGRQ ENSBTAP00000012340/1-438 ISAYRYDPYS KVLSREHYDH QRMQANRQEA IATAQSAKSW GLILGTLGRQ bmy_00182T0/1-666 VPAYRYDPYS KVLSREHYDY QRMQANREEA IASARSAKSW GLILGTLGRQ BACU006970/1-619 VPAYRYDPYS KVLSREHYDY QRMQANRQEA IATARSAKSW GLILGTLGRQ 301 350 ENSTTRP00000001100/1-412 GSPKILEHLE SLLRALGLPF MRLLLSEIFP SKLRLLPEVD VWVQVACPRL ENSP00000263083/1-443 GSPKILEHLE SRLRALGLSF VRLLLSEIFP SKLSLLPEVD VWVQVACPRL ENSBTAP00000012340/1-438 GSPKILEHLE SRLQALGLPF VRLLLSEIFP SKLSLLPEVD VWVQVACPRL bmy_00182T0/1-666 GSPKILEHLE SRLRALGLPF VRLLLSEIFP SKLSLLPEVD VWVQVACPRL BACU006970/1-619 GSPKILEHLE SRLRALGLPF VRLLLSEIFP SKLSLLPEVD VWVQVACPRL 351 400 ENSTTRP00000001100/1-412 SIDWGTAFPK PLLTPYEAAV ALRDISWQQP YPMDFYAGSS LGPWTVNHGR ENSP00000263083/1-443 SIDWGTAFPK PLLTPYEAAV ALRDISWQQP YPMDFYAGSS LGPWTVNHGQ ENSBTAP00000012340/1-438 SIDWGTAFPK PLLTPYEAAV ALRDISWQQP YPMDFYASSS LGPWTVNHGR bmy_00182T0/1-666 SIDWGTAFPK PLLTPYEAAV ALRDIPWQQP YPMDFYAGSS LGPWTVNHGR BACU006970/1-619 SIDWGTAFPK PLLTPYEAAV ALRDISWQQP YPMDFYAGSS LGPWTVNHGR 401 450 ENSTTRP00000001100/1-412 DRLLQHPGRL ALAK------ ---------- ---------- ---------- ENSP00000263083/1-443 DRRPHAPGRP ARGK------ ---------- ---------- ---------- ENSBTAP00000012340/1-438 DRLLQVPGRL ALGK------ ---------- ---------- ---------- bmy_00182T0/1-666 DRLLQHPGRP ALGKGGAGIG FRPLMFNFRS GKDRFRSLWR LPGIMATSRP BACU006970/1-619 DRLLQHPGRP ALGK------ ---------- ---------- ---------- 451 500 ENSTTRP00000001100/1-412 ---------- ---------- ---------- ----VPERP- ---------- ENSP00000263083/1-443 ---------- ---------- ---------- ----VQEGS- ---------- ENSBTAP00000012340/1-438 ---------- ---------- ---------- ----VQGGP- ---------- bmy_00182T0/1-666 LRVLCLAGFR QSERGFREKT GALRKVLRGR AELVCLSGPH PVADAAGPEG BACU006970/1-619 ---------- -SERGFREKT GALRKALRGR AELVCLSGPH PVADAAGPEG 501 550 ENSTTRP00000001100/1-412 ARPFPAVAC- ---------- ---------- -EACSCRDEE VA-------- ENSP00000263083/1-443 ARPPSAVAC- ---------- ---------- -EDCSCRDEK VA-------- ENSBTAP00000012340/1-438 ARPSPAAAC- ---------- ---------- -EACSCRDEE VS-------- bmy_00182T0/1-666 AGPDPGPCSP EEQPRGWWFS KQEADVFSAL EEPTVCRGLE EALGTVAQAL BACU006970/1-619 AGPDPGPCPP EEQPRGWWFS KQEADVFSAL EEPTVCRGLE EALGTVAQAL 551 600 ENSTTRP00000001100/1-412 ---------- ---------- ---------- ---------- ---------- ENSP00000263083/1-443 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012340/1-438 ---------- ---------- ---------- ---------- ---------- bmy_00182T0/1-666 SKLGPFDGIL GFSQGAALAA LVCALGQAGD PRFPLPRFII LVSGFCPRGL BACU006970/1-619 SKLGPFDGIL GFSQGAALAA LVCALGQAGD PRFPLPRFII LVSGFCPRGL 601 650 ENSTTRP00000001100/1-412 ---------P LAP------- ---------- ---------- ---------- ENSP00000263083/1-443 ---------P LAP------- ---------- ---------- ---------- ENSBTAP00000012340/1-438 ---------P IAL------- ---------- ---------- ---------- bmy_00182T0/1-666 GLKEAILQGP LSLPSLHVFG DTDRVIPSQE SMQLCSRFAG AIALTHSGGH BACU006970/1-619 GLKEAILQGP LSLPSLHVFG DTDRVIPSQE SMQLCSRFAG AIALTHSGGH 651 700 ENSTTRP00000001100/1-412 ---------- ---------- - ENSP00000263083/1-443 ---------- ---------- - ENSBTAP00000012340/1-438 ---------- ---------- - bmy_00182T0/1-666 FIPAAAPQRQ AYLQFLDQFA E BACU006970/1-619 FIPAAAPQRQ AYLQFLDQFA E