KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:45:40 2014 Check: 00 .. Name: ENSTTRP00000010226/1-983 Len: 989 Check: 5378 Weight: 1.00 Name: ENSP00000339867/1-988 Len: 989 Check: 1962 Weight: 1.00 Name: ENSBTAP00000012099/1-988 Len: 989 Check: 8165 Weight: 1.00 Name: bmy_15500T0/1-947 Len: 989 Check: 8183 Weight: 1.00 Name: BACU010942/1-989 Len: 989 Check: 815 Weight: 1.00 // 1 50 ENSTTRP00000010226/1-983 MEPSGSQRHG AEPSWWGSAP QYQYMPFEHC TSYGLPSKSG GLQHRLRRDA ENSP00000339867/1-988 MEQSRSQQRG GEQSWWGSDP QYQYMPFEHC TSYGLPSENG GLQHRLRKDA ENSBTAP00000012099/1-988 MEPSGAQQRG GEPSWWGSAP QYQYMPFEHC TSYGLPSEDG GLQRRLRRDA bmy_15500T0/1-947 MEPSGSQQHG AEPSWWGSAP QYQYMPFEHC TSYGLPSKSG GLQHRLRRDA BACU010942/1-989 MEPSGSQRHG AEPSWWGSAP QYQYMPFEHC TSYGLPSKSG DLQHRLRRDA 51 100 ENSTTRP00000010226/1-983 GSRPNARPTQ IYGHHKAQFS DNEQDTGMPK TMDSSASMDS TEEDHYSKCQ ENSP00000339867/1-988 GPRHNVHPTQ IYGHHKEQFS DREQDIGMPK KTGSSSTVDS KDEDHYSKCQ ENSBTAP00000012099/1-988 GPRASAHPTQ IYGHHKGQFS GKEQDNEMPK TMGSSASMDS KDEDHYSKCQ bmy_15500T0/1-947 GPRPNARPTQ IYGHQKEQFS DKEQDTGMPK TTDSSASMDN KDENHHSKCQ BACU010942/1-989 GPRPNARPTQ IYGHHKEQFS DKEQDTGMPK TTDSSASMDN KDENHYSKCQ 101 150 ENSTTRP00000010226/1-983 GCIHRLGLVM RRKLGEDWIF LLLLGLLMAL VSWCMDYVSA KTLQAYKWTY ENSP00000339867/1-988 DCIHRLGQVV RRKLGEDGIF LVLLGLLMAL VSWSMDYVSA KSLQAYKWSY ENSBTAP00000012099/1-988 DCMHRLGLVV RRKLGEDWIF LVLLGLLMAL VSWCMDYVSA KTLQAYKWSY bmy_15500T0/1-947 GCIHGLGLVM RRKLGEDWIF LVLLGLLMAL ISWCMDYVSA KTLQAYKWTY BACU010942/1-989 GCIHGLGLVM RRKLGEDWIF LVLLGLLMAL ISWCMDYVSA KTLQAYKWTY 151 200 ENSTTRP00000010226/1-983 YQMQPNLPLQ FLVWVSFPLV LILFSALFCH LISPQAVGSG IPEMKTILRG ENSP00000339867/1-988 AQMQPSLPLQ FLVWVTFPLV LILFSALFCH LISPQAVGSG IPEMKTILRG ENSBTAP00000012099/1-988 YQMQPSLPLQ FLVWVGFPLI LILFSALFCQ IISPQAVGSG IPEMKTILRG bmy_15500T0/1-947 YQMQPNLPLQ FLVWVTFPLI LILFSALFCH LISPQAVGSG IPEMKTILRG BACU010942/1-989 YQMQPNLPLQ FLVWVTFPLI LILFSALFCH LISPQAVGSG IPEMKTILRG 201 250 ENSTTRP00000010226/1-983 VVLKEYLTLK AFVAKVVALT AGLGSGIPVG KEGPFVHIAS ICAAVLSKFM ENSP00000339867/1-988 VVLKEYLTMK AFVAKVVALT AGLGSGIPVG KEGPFVHIAS ICAAVLSKFM ENSBTAP00000012099/1-988 VVLKEYLTLK AFVAKVVALT AGLGSGIPVG KEGPFVHIAS ICAAILSKFM bmy_15500T0/1-947 VVLKEYLTLK AFVAKVVALT AGLGSGIPVG KE----HLRR CPQQVHVRTL BACU010942/1-989 VVLKEYLTLK AFVAKVVALT AGLGSGIPVG KEGPFVHIAS ICAAVLSKFM 251 300 ENSTTRP00000010226/1-983 SVLCGVYEQP YYYTDMLTVG CAVGVGCCFG TPLGXXXXXX XXXXXXXXXX ENSP00000339867/1-988 SVFCGVYEQP YYYSDILTVG CAVGVGCCFG TPLGGVLFSI EVTSTYFAVR ENSBTAP00000012099/1-988 SVFCGVYEQP YYYTDMLTVG CAVGVGCCFG TPLGGVLFSI EVTSTYFAVR bmy_15500T0/1-947 ---------- ---------- --------WG --VRGVLFSI EVTSAYFAVR BACU010942/1-989 SVLCGVYEQP YYYTDMLTVG CAVGVGCCFG TPLGGVLFSI EVTSTYFAVR 301 350 ENSTTRP00000010226/1-983 XXXXXXXXXX XXXXXXXXXX XXXXXXXTIT ALFRTNFRMD FPFDLQELPA ENSP00000339867/1-988 NYWRGFFAAT FSAFVFRVLA VWNKDAVTIT ALFRTNFRMD FPFDLKELPA ENSBTAP00000012099/1-988 NYWRGFFAAT FSAFVFRVLA VWNKDAVTIT ALFRTNFRMD FPFDLQELPA bmy_15500T0/1-947 NYWRGFFAAT FSAFVFRVLA VWNKDAVTIT ALFRTNFRMD FPFDLQELPA BACU010942/1-989 NYWRGFFAAT FSAFVFRVLA VWNKDAVTIT ALFRTNFRMD FPFDLQELPA 351 400 ENSTTRP00000010226/1-983 FAAIGICCGF LGAVFVYLHR QVMLGVRKHK ALSQFLAKHR LLYPGIVTFV ENSP00000339867/1-988 FAAIGICCGL LGAVFVYLHR QVMLGVRKHK ALSQFLAKHR LLYPGIVTFV ENSBTAP00000012099/1-988 FAIIGICCGF LGAVFVYLHR QVMLGVRKHK VLSQFLAKHR LLYPGIVTFV bmy_15500T0/1-947 FAAIGICCGF LGAVFVYLHR QVMLGVRKHK ALSQFLAKHR LLYPGIVTFV BACU010942/1-989 FAAIGICCGF LGAVFVYLHR QVMLGVRKHK ALSRFLAKHR LLYPGIVTFV 401 450 ENSTTRP00000010226/1-983 IASFTFPPGM GQFMAGELMP REAISTLFDN NTWVKHEGDP ESLGQSAVWI ENSP00000339867/1-988 IASFTFPPGM GQFMAGELMP REAISTLFDN NTWVKHAGDP ESLGQSAVWI ENSBTAP00000012099/1-988 IASFTFPPGI GQFMAGELMP REAISTLFDN NTWVKHIGDP ESLGRSAVWI bmy_15500T0/1-947 IASFTFPPGM GQFMAGELMP REAISTLFDN NTWVKHVGDP ESLGQSAVWI BACU010942/1-989 IASFTFPPGM GQFMAGELMP REAISTLFDN NTWVKHVGDP ESLGQSAVWI 451 500 ENSTTRP00000010226/1-983 HPKVNVVIII ILFFIMKFWM SIVATTMPIP CGGFMPVFVL GAAFGRLVGE ENSP00000339867/1-988 HPRVNVVIII FLFFVMKFWM SIVATTMPIP CGGFMPVFVL GAAFGRLVGE ENSBTAP00000012099/1-988 HPKASVVIVL LLFFIMKFWM SIVATTMPIP CGGFMPVFVL GAAFGRLVGE bmy_15500T0/1-947 HPKVNVVIII TLFFIMKFWM SIVATTMPIP CGGFMPVFVL GAAFGRLVGE BACU010942/1-989 HPKVNVVIII TLFFIMKFWM SIVATTMPIP CGGFMPVFVL GASFGRLVGE 501 550 ENSTTRP00000010226/1-983 IMAILFPDGI LFDDIIYKIL PGGYAVIGAA ALTGAVSHTV STAVICFELT ENSP00000339867/1-988 IMAMLFPDGI LFDDIIYKIL PGGYAVIGAA ALTGAVSHTV STAVICFELT ENSBTAP00000012099/1-988 IMAMLFPDGI LFDDIIYKIL PGGYAVIGAA ALTGAVSHTV STAVICFELT bmy_15500T0/1-947 IMAMLFPDGI LFDDIIYKIL PGGYAVIGAA ALTGAVSHTV STAVICFELT BACU010942/1-989 IMAMLFPDGI LFDDILYKIL PGGYAVIGAA ALTGAVSHTV STAVICFELT 551 600 ENSTTRP00000010226/1-983 GQIAHILPMM VAVILANMVA QSLQPSLYDS IIQVKKLPYL PDLGWNQLSK ENSP00000339867/1-988 GQIAHILPMM VAVILANMVA QSLQPSLYDS IIQVKKLPYL PDLGWNQLSK ENSBTAP00000012099/1-988 GQIAHILPMM VAVILANMVA QSLQPSLYDS IIQVKKLPYL PDLGWNQLSK bmy_15500T0/1-947 GQIAHILPMM VAVILANMVA QSLQPSLYDS IIQVKKLPYL PDLGWNQLSK BACU010942/1-989 GQIAHILPMM VAVILANMVA QSLQPSLYDS IIQVKRLPYL PDLGWNQLSK 601 650 ENSTTRP00000010226/1-983 FTVFVEDIMV RDVKFVSASC TYGELRNLLQ TTTVKTLPLV DSKDSMILLG ENSP00000339867/1-988 YTIFVEDIMV RDVKFVSASY TYGELRTLLQ TTTVKTLPLV DSKDSMILLG ENSBTAP00000012099/1-988 FTIFVEDIMV RDVKFVSASC TYGELRNLLQ TTTVKTLPLV ESKDSMILLG bmy_15500T0/1-947 FTVFVEDIMV RDVKFVSASC TYGELRNLLQ TTTVKTFPLV DSKDSMILLG BACU010942/1-989 FTVFVEDIMV RDVKFVSASC TYGDLRNLLQ TTTVKTLPLV DSKDSMILLG 651 700 ENSTTRP00000010226/1-983 SVERSELQSL LQHHLCPERR LQLAQDMARK LSELPFDGKV RQVGEGRRG- ENSP00000339867/1-988 SVERSELQAL LQRHLCPERR LRAAQEMARK LSELPYDGKA RLAGEGLPGA ENSBTAP00000012099/1-988 SVERSELQSL LQRHLCPERR LRLAQEMARK LSELPFDGKV RPA-RGRSGV bmy_15500T0/1-947 SVERSELQSL LQQHLCPERR LQVAQDTARK LSELPFDGKV RQAGEGRRGV BACU010942/1-989 SVERSELQSL LQHHLCPERR LQLAQDMARK LSELPFDGKV RQAGEGRRGV 701 750 ENSTTRP00000010226/1-983 -P-GRPESFA FVDEDEDEDL YGKPELPPLP PPHPFSTAPL PPEEPNGPVP ENSP00000339867/1-988 PP-GRPESFA FVDEDEDEDL SGKSELPPSL ALHPSTTAPL SPEEPNGPLP ENSBTAP00000012099/1-988 WPQGRPESFA FVDEDADEDL YGKPEMPPLH PSHPLPTDPL PPEEPNGPLP bmy_15500T0/1-947 WPQGRPESFA FVDEDEDEDL YGKPELPPLP PPHPFPTASL PPEEPNGPLP BACU010942/1-989 WPQGRPESFA FVDEDEDEDL HGKPELPPLP PPHPFPTASL TPEEPNGPLP 751 800 ENSTTRP00000010226/1-983 GHKQQLEAPE LEGQRPSIFQ SLLRCLLGRA RPT-KKMTQD SEDLVDNMSP ENSP00000339867/1-988 GHKQQPEAPE PAGQRPSIFQ SLLHCLLGRA RPTKKKTTQD STDLVDNMSP ENSBTAP00000012099/1-988 SHKQQLEALE STGPRPSIFQ SLLRCLLGRA RPKKKKMTQD STDLVDNMSP bmy_15500T0/1-947 GHKQQLEAPE LEGQRPSIFQ SLLRCLLGRA RPTKKKMTQD SEDLVDNMSP BACU010942/1-989 GHKQQLEAPE LEGQRPSIFQ SLLCCLLGRA RPTKKKVTQD SEDLVDNMSP 801 850 ENSTTRP00000010226/1-983 EEIEAWEREQ LSQPVCFDSC CIDQSPFQLV EQTSLHKTHT LFSLLGLHLA ENSP00000339867/1-988 EEIEAWEQEQ LSQPVCFDSC CIDQSPFQLV EQTTLHKTHT LFSLLGLHLA ENSBTAP00000012099/1-988 EEIEAWEQEQ LGQPVCFDSC CIDQSPFQLV EQTTLHKTHT LFSLLGLHLA bmy_15500T0/1-947 EEIEAWEREQ LSQPVCFDSC CIDQSPFQL- -------THT LFSLLGLHLA BACU010942/1-989 EEIEAWEREQ LSQPVCFDSC CIDQSPFQLV EQTSLHKTHT LFSLLGLHLA 851 900 ENSTTRP00000010226/1-983 YVTSMGKLTG VLALXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000339867/1-988 YVTSMGKLRG VLALEELQKA IEGHTKSGVQ LRPPLASFRN TTSTRKSTGA ENSBTAP00000012099/1-988 YVTSMGKLRG VLALEELQKA IEGHTKSGVQ LRPPLASFRS TTSTRKNTGV bmy_15500T0/1-947 YVTSMGKLTG VLALEELQKA IEGHTKSGVQ LRPPLASFRS TTSTRKTPGG BACU010942/1-989 YVTSMGKLTG VLALEELQKA IEGHTKSGVQ LRPPLASFRS TTSTRKTPGG 901 950 ENSTTRP00000010226/1-983 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000339867/1-988 PPSSAENWNL PEDRPGATGT GDVIAASPET PVPSPSPEPP LSLAPGKVEG ENSBTAP00000012099/1-988 PLPPAEGWSL PEDGAGATGA GDVTPASPET PVPSPFPERP LSGAPAKAES bmy_15500T0/1-947 PLPPAEAWSL PQDGSGATGE GDVAPASPET PVPSASPEAP LSWAPAKAES BACU010942/1-989 PLPPAEAWSL PQDGGGATGA GDMAAASPET PVPPASPEPP LSWAPAKAES 951 1000 ENSTTRP00000010226/1-983 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XK--KKMVL ENSP00000339867/1-988 ELEELELVES PGLEEELADI LQGPSLRSTD EEDEDELIL ENSBTAP00000012099/1-988 ELEELELVEG PGPEEELADI LQGPSLRSTD EEDGDELIL bmy_15500T0/1-947 ELEELELVEG PGPEEELADI LQGPSLRSTD DEDEDELVL BACU010942/1-989 ELEELELVEG PGPEEELADI LQGPSLRSTD DEDEDELVL