KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:45:38 2014 Check: 00 .. Name: BACU012836/1-291 Len: 738 Check: 5101 Weight: 1.00 Name: ENSP00000356562/1-696 Len: 738 Check: 8127 Weight: 1.00 Name: ENSBTAP00000012084/1-696 Len: 738 Check: 8345 Weight: 1.00 Name: bmy_14073T0/1-544 Len: 738 Check: 8580 Weight: 1.00 Name: ENSTTRP00000010208/1-696 Len: 738 Check: 3632 Weight: 1.00 // 1 50 BACU012836/1-291 -----MKFAE HLSAHITPEW RKQY--IQYE AFKDMLYSAQ DQAPSVEVTD ENSP00000356562/1-696 -----MKFAE HLSAHITPEW RKQY--IQYE AFKDMLYSAQ DQAPSVEVTD ENSBTAP00000012084/1-696 -----MKFAE HLSAHITPEW RKQY--IQYE AFKDMLYSAQ DQAPSVEVTD bmy_14073T0/1-544 MLSGPSRGQQ TLQMGLAAS- RKVFETVIQE AFKDMLYSAQ DQAPSVEVTD ENSTTRP00000010208/1-696 -----MKFAE HLSAHITPEW RKQY--IQYE AFKDMLYSAQ DQAPSVEVTD 51 100 BACU012836/1-291 EDTVKRYFAK FEEKFFQTCE KELAKINTFY S--------- ---------- ENSP00000356562/1-696 EDTVKRYFAK FEEKFFQTCE KELAKINTFY S--------- ---------- ENSBTAP00000012084/1-696 EDTVKRYFAK FEEKFFQTCE KELAKINTFY S--------- ---------- bmy_14073T0/1-544 EDTVKRYFAK FEEKFFQTCE KELAKINTFY SDVYHVTFLG LYVLTCKMSK ENSTTRP00000010208/1-696 EDTVKRYFAK FEEKFFQTCE KELAKINTFY S--------- ---------- 101 150 BACU012836/1-291 ---------- ------EKLA EAQRRFATLQ NELQSSLDAQ KESTGVTTLR ENSP00000356562/1-696 ---------- ------EKLA EAQRRFATLQ NELQSSLDAQ KESTGVTTLR ENSBTAP00000012084/1-696 ---------- ------EKLA EAQRRFATLQ NELQSSLDAQ KESTGVTTLR bmy_14073T0/1-544 LIPKPLGFHI SVLLLIEKLA EAQRRFATLQ NELQSSLDAQ KESTGVTTLR ENSTTRP00000010208/1-696 ---------- ------EKLA EAQRRFATLQ NELQSSLDAQ KESTGVTTLR 151 200 BACU012836/1-291 QRRKPVFHLS HEERVQHRNL KDLKLAFSEF YLSLILLQNY QNLNFTGFRK ENSP00000356562/1-696 QRRKPVFHLS HEERVQHRNI KDLKLAFSEF YLSLILLQNY QNLNFTGFRK ENSBTAP00000012084/1-696 QRRKPVFHLS HEERVQHRNI KDLKLAFSEF YLSLILLQNY QNLNFTGFRK bmy_14073T0/1-544 QRRKPVFHLS HEERVQHRNL KDLKLAFSEF YLSLILLQNY QNLNFTGFRK ENSTTRP00000010208/1-696 QRRKPVFHLS HEERVQHRNL KDLKLAFSEF YLSLILLQNY QNLNFTGFRK 201 250 BACU012836/1-291 ILKKHDKILE TSRGADWRVA HVEVAPFYTC KKINQLISET EAVVTNELED ENSP00000356562/1-696 ILKKHDKILE TSRGADWRVA HVEVAPFYTC KKINQLISET EAVVTNELED ENSBTAP00000012084/1-696 ILKKHDKILE TSRGADWRVA HVEVAPFYTC KKINQLISET EAVVTNELED bmy_14073T0/1-544 ILKKHDKILE TSRGADWRVA HVEVAPFYTC KKINQLISET EAVVTNELED ENSTTRP00000010208/1-696 ILKKHDKILE TSRGADWRVA HVEVAPFYTC KKINQLISET EAVVTNELED 251 300 BACU012836/1-291 GDRQKAMKRL RVPPLGAAQP APAWTTFRVG LFCGIFIVLN ITLVLAA--- ENSP00000356562/1-696 GDRQKAMKRL RVPPLGAAQP APAWTTFRVG LFCGIFIVLN ITLVLAAVFK ENSBTAP00000012084/1-696 GDRQKAMKRL RVPPLGAAQP APAWTTFRVG LFCGIFIVLN ITLVLAAIFK bmy_14073T0/1-544 GDRQKAMKRL RVPPLGAAQP APAWTTFRVG LFCGIFIVLN ITLVLAAVFK ENSTTRP00000010208/1-696 GDRQKAMKRL RVPPLGAAQP APAWTTFRVG LFCGIFIVLN ITLVLAAVFK 301 350 BACU012836/1-291 ---------- ---------- ---------- ---------- ---------- ENSP00000356562/1-696 LETDRSIWPL IRIYRGGFLL IEFLFLLGIN TYGWRQAGVN HVLIFELNPR ENSBTAP00000012084/1-696 LEAGRNIWPL IRIYRGGFLL IEFLFLLGIN TYGWRQAGVN HVLIFELNPR bmy_14073T0/1-544 LETDRSIWPL IRIYRGGFLL IEFLFLLGIN TYGWRQAGVN HVLIFELNPR ENSTTRP00000010208/1-696 LETDRSIWPL IRIYRGGFLL IEFLFLLGIN TYGWRQAGVN HVLIFELNPR 351 400 BACU012836/1-291 ---------- ---------- ---------- --------SP LISF------ ENSP00000356562/1-696 SNLSHQHLFE IAGFLGILWC LSLLACFFAP ISVIPTYVYP LALYGFMVFF ENSBTAP00000012084/1-696 SNLSHQHLFE IAGFLGILWC LSLLACFFAP ISVIPTYVYP LALYGFMVFF bmy_14073T0/1-544 SNLSHQHLFE IAGFLGILWC LSLLACFFAP VSVIPTYVYP LVLYGFMVFF ENSTTRP00000010208/1-696 SNLSHQHLFE IAGFLGILWC LSLLACFFAP VSVIPTYVYP LVLYGFMVFF 401 450 BACU012836/1-291 ---------- -SRQKPLASL FPHTSSPVHQ ---------- -----QVLLL ENSP00000356562/1-696 LINPTKTFYY KSRFWLLKLL FRVFTAPFHK VGFADFWLAD QLNSLSVILM ENSBTAP00000012084/1-696 LINPTKTFYY KSRFWLLKLL FRVFTAPFHK VGFADFWLAD QLNSLSVILM bmy_14073T0/1-544 LINPTKTFYY KSRFWLLKLL FRVFTAPFHK VGFADFWLAD QLNSLSVILM ENSTTRP00000010208/1-696 LINPTKTFYY KSRFWLLKLL FRVFTAPFHK VGFADFWLAD QLNSLSVILM 451 500 BACU012836/1-291 CLQNML---- ---------- ---------- ---------- ---------- ENSP00000356562/1-696 DLEYMICFYS LELKWDESKG LLPNNSEESG ICHKYTYGVR AIVQCIPAWL ENSBTAP00000012084/1-696 DLEYMICFYS FELKWEDSEG LLPKDSQEPE ICHKYSYGVR AVVQCIPAWL bmy_14073T0/1-544 DLEYMICFYS FELKWDESGG LLPNDSEEPE ICHKYSYGVR AVVQCIPAWL ENSTTRP00000010208/1-696 DLEYMICFYS FELKWDESGG LLPNDSEEPE ICHNYSYGVR AIVQCIPAWL 501 550 BACU012836/1-291 ---------- ---------- ---------- ---------- ---------- ENSP00000356562/1-696 RFIQCLRRYR DTKRAFPHLV NAGKYSTTFF MVTFAALYST HKERGHSDTM ENSBTAP00000012084/1-696 RFIQCLRRYR DTKRAFPHLI NAGKYSTTFF TVTFAALYST HKEQRHSDTM bmy_14073T0/1-544 RFIQCLRRYR DTKRAFPHLV NAGKYSTTFF TVTFAALYST HKGIH----- ENSTTRP00000010208/1-696 RFIQCLRRYR DTKRAFPHLV NAGKYSTTFF TVTFAALYST HKXXXXXXXX 551 600 BACU012836/1-291 ---------- ---------- ---------- ---------- ---------- ENSP00000356562/1-696 VFFYLWIVFY IISSCYTLIW DLKMDWGLFD KNAGENTFLR EEIVYPQKAY ENSBTAP00000012084/1-696 VFFYLWIVFC IISSCYTLIW DLKMDWGLFD KNAGENTFLR EEIVYPQKAY bmy_14073T0/1-544 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010208/1-696 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXENTFPR EEIVYPQKAY 601 650 BACU012836/1-291 ---------- ---------- ---------- ---------- ---------- ENSP00000356562/1-696 YYCAIIEDVI LRFAWTIQIS ITSTTLLPHS GDIIATVFAP LEVFRRFVWN ENSBTAP00000012084/1-696 YYSAIIEDVI LRFAWTIQIS ITSMTSLPHS GDIIATVFAP LEVFRRFVWN bmy_14073T0/1-544 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010208/1-696 YYCAIVEDVI LRFAWTIQIS ITSMTLLPHS RDIIATVFAP LEVFRRFVWN 651 700 BACU012836/1-291 ---------- ---------- ---------- ---------- ---------- ENSP00000356562/1-696 FFRLENEHLN NCGEFRAVRD ISVAPLNADD QTLLEQMMDQ DDGVRNRQKN ENSBTAP00000012084/1-696 FFRLENEHLN NCGEFRAVRD ISVAPLNADD QTLLEQMMDQ EDGVRNRQKN bmy_14073T0/1-544 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010208/1-696 FFRLENEHLN NCGEYRAVRD ISVAPLNADD QTLLEQMMDQ EDGVRNRQKN 701 750 BACU012836/1-291 ---------- ---------- ---------- -------- ENSP00000356562/1-696 RSWKYNQSIS LRRPRLASQS KARDTKVLIE DTDDEANT ENSBTAP00000012084/1-696 RPWKYSQSIS LRRPRLASQS KARDTKVLIE DTDDEANT bmy_14073T0/1-544 ---------- ---------- ---------- -------- ENSTTRP00000010208/1-696 RPWKYSQSIS LRRPRLASQS KARDTKVLIE DTDDEANT