KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:45:30 2014 Check: 00 .. Name: ENSBTAP00000012034/1-701 Len: 741 Check: 6065 Weight: 1.00 Name: ENSP00000462664/1-740 Len: 741 Check: 9687 Weight: 1.00 Name: ENSTTRP00000013886/1-738 Len: 741 Check: 5138 Weight: 1.00 Name: bmy_16884T0/1-672 Len: 741 Check: 6558 Weight: 1.00 Name: BACU014880/1-682 Len: 741 Check: 288 Weight: 1.00 // 1 50 ENSBTAP00000012034/1-701 -----MERAE A--GAPG--- --GWPGAL-E PDELDDLPWL HDELEPAGSS ENSP00000462664/1-740 MEKLGVEPEE EGGGDDDEED AEAWAMELAD VGAAASSQGV HDQVLPTPNA ENSTTRP00000013886/1-738 TQKQGVEPEE E--GDRDEEE DAALGMERAE TWAAGSSPAV HDQVVPAGSS bmy_16884T0/1-672 ---------- ---------- ---------- ---------- ---------- BACU014880/1-682 TQKRGVEPEE E--GDRDEEE DAARVMERAE AGAAGSSP-V HDQVVPEGSS 51 100 ENSBTAP00000012034/1-701 SCRVIVHVDL DCFYAQVEMI SNPELKDKPL GVQQKYLVVT CNYEARKLGV ENSP00000462664/1-740 SSRVIVHVDL DCFYAQVEMI SNPELKDKPL GVQQKYLVVT CNYEARKLGV ENSTTRP00000013886/1-738 SSRVIVHVDL DCFYAQVEMI SHPELKGKPL GVQQKFLVVT CNYEARELG- bmy_16884T0/1-672 ---------- --------MI SNPELKGKPL GVQQKYLVVT CNYEARKLGV BACU014880/1-682 SSRVIVHVDL DCFYAQVEMI SNPELKGKPL ---------- ---------- 101 150 ENSBTAP00000012034/1-701 KKLMSVRDAK EKCPQLVLVN GEDLTRYREM SYK------- ---------- ENSP00000462664/1-740 KKLMNVRDAK EKCPQLVLVN GEDLTRYREM SYKVTELLEE FSPVVERLGF ENSTTRP00000013886/1-738 KXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_16884T0/1-672 KKLMNVRDAK EKCPQLVLVN GEDLTXYREM SYKVTELLEE FSPIVERLGF BACU014880/1-682 ---------- ---------- ---------- -----ELLEE FSPIVERLGF 151 200 ENSBTAP00000012034/1-701 ------VTEM VEKRLEQLQS DELSALTVSG HVYNNQPVNP RDTLHIRLLV ENSP00000462664/1-740 DENFVDLTEM VEKRLQQLQS DELSAVTVSG HVYNNQSINL LDVLHIRLLV ENSTTRP00000013886/1-738 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXINL HDILHIRLLI bmy_16884T0/1-672 DENFVDLTEM VEKRLEQLQS DEPSALTVSG HVYDNQPINL HDILHIRLLI BACU014880/1-682 DENFVDLTEM VEKRLEQLQS DEPSALTVSG HVYDNQPINL HDILHIRLLI 201 250 ENSBTAP00000012034/1-701 GSQIVAEMRE AMYQQLGLTG CAGVASNKLL AKLVSGVFKP NQQTVLLPES ENSP00000462664/1-740 GSQIAAEMRE AMYNQLGLTG CAGVASNKLL AKLVSGVFKP NQQTVLLPES ENSTTRP00000013886/1-738 GSQIAAEMRE AMYNQLGLTG CAGVASNKLL AKLVSGIFKP NQQTLLLPES bmy_16884T0/1-672 GSQIAAEMRE AMYNQLGLTG CAGVASNKLL AKLVSGIFKP NQQTLLLPES BACU014880/1-682 GSQIAAEMRE AMYNQLGLTG CAGVASNKLL AKLVSGIFKP NQQTLLLPES 251 300 ENSBTAP00000012034/1-701 SQELIHSLNH IKEMPGIGYK TTKRLEALGI SSVRDLQTFP SKVLEKELGI ENSP00000462664/1-740 CQHLIHSLNH IKEIPGIGYK TAKCLEALGI NSVRDLQTFS PKILEKELGI ENSTTRP00000013886/1-738 SQDLIHSLNH IKKMPGIGYK TTKRLEALGI SSVRDLQTFS SKILERELGI bmy_16884T0/1-672 SQDLIHSLNH IKEMPGIGYK TTKRLEALGI SSVRDLQTFS SKILEKELGI BACU014880/1-682 SQDLIHSLNH IKEMPGIGYK TTKRLEALGI SSVRDLQTFS SKILEKELGI 301 350 ENSBTAP00000012034/1-701 SVAQRIQKLS FGEDDSPVTP SGPPQSFSEE DSFKKCSSEV EAKTKIEELL ENSP00000462664/1-740 SVAQRIQKLS FGEDNSPVIL SGPPQSFSEE DSFKKCSSEV EAKNKIEELL ENSTTRP00000013886/1-738 SVAQRIQKLS FGEDNSPVTP SGPPQSFSEE DSFKKCSSEV EAKNKIEELL bmy_16884T0/1-672 SVAQRIQKLS FGEDNSPVTP SGPPQSFSEE DSF-KCSSEV EAKNKIEELL BACU014880/1-682 SVAQRIQKLS FGEDNSPVTP SGPPQSFSEE DSF-KCSSEV EAKNKIEELL 351 400 ENSBTAP00000012034/1-701 ASLLNRVCQD GRKPHTIRLI IRRYSSEKHY NRESRQCPIP SHIIQKLGAG ENSP00000462664/1-740 ASLLNRVCQD GRKPHTVRLI IRRYSSEKHY GRESRQCPIP SHVIQKLGTG ENSTTRP00000013886/1-738 ASLLNRVCQD GRKPHTVRLI IRRYSSEKHY SRESRQCPIP SHIIQKLGIG bmy_16884T0/1-672 ASLLNRVCQD GRKPHTIRLI IRRYSPEKHY NRESRQCPIP SHIIQKLGIG BACU014880/1-682 ASLLNRVCQD GRKPHTIRLI IRRYSSEKHY NRESRQCPIP SHIIQKLGIG 401 450 ENSBTAP00000012034/1-701 NYDVMTPMVD ILMKLFRNMV NVKVPFHLTL LSVCFCNLKS LNTAKKGTMD ENSP00000462664/1-740 NYDVMTPMVD ILMKLFRNMV NVKMPFHLTL LSVCFCNLKA LNTAKKGLID ENSTTRP00000013886/1-738 NYDVMTPMVD VLMKLFRNMV NVKMPFHLTL LSVCFCNLKA LNTAKKGTID bmy_16884T0/1-672 NYDVMTPMVD VLMKLFRNMV NVKMPFHLTL LSVCFCNLKA LNTAKKGTID BACU014880/1-682 NYDVMTPMVD VLMKLFRNMV NVKMPFHLTL LSVCFCNLKA LNTAKKGTID 451 500 ENSBTAP00000012034/1-701 YYLTPSLSTT SHAGKRSFKM KDCHMEDFSK DKETNRDFLP TGRIESTRTG ENSP00000462664/1-740 YYLMPSLSTT SRSGKHSFKM KDTHMEDFPK DKETNRDFLP SGRIESTRTR ENSTTRP00000013886/1-738 YYLTPSLSTT SRSGKHSFKM KDTHMEDFSK DKETNWDFLP TGKIESTRTG bmy_16884T0/1-672 YYLTPSLSTT SRSGKHSFKM KDTHMEDFSK DKETNWDFLP TGRIESTRTG BACU014880/1-682 YYLTPSLSTT SRSGKHSFKM KDTHMEDFSK DKETNWDFLP TGRIESTRTG 501 550 ENSBTAP00000012034/1-701 ESPPDPINSS KEKDSNEFPV SLLPEDIDQE VFKQLPVDIQ EEILSGKSRE ENSP00000462664/1-740 ESPLDTTNFS KEKDINEFPL CSLPEGVDQE VFKQLPVDIQ EEILSGKSRE ENSTTRP00000013886/1-738 ESPPDTTSFS KEKDSNELPL SSLPVGIDQE VFKQLPVDIQ EEILSGKSRE bmy_16884T0/1-672 ESPPDTTSFS KEKDSNEFPL SSLPEGIDQE VFKQLPVDIQ EEILSGKSRE BACU014880/1-682 ESPPDTTSFS KEKDSNEFPL SSLPEGIDQE VFKQLPVDIQ EEILSGKSRE 551 600 ENSBTAP00000012034/1-701 KVQGKGSLSC PLRASRGVLS LFSTKQKQDS SLNPKDHVPK SKQVSSVSPC ENSP00000462664/1-740 KFQGKGSVSC PLHASRGVLS FFSKKQMQDI PINPRDHLSS SKQVSSVSPC ENSTTRP00000013886/1-738 KVQGKGSLSC PLRASRGVLS FFSTKQMQDG SLNPRDHLSN TKQISSVSPC bmy_16884T0/1-672 KVQGKGSLSC PLHASRGVLS FFSTKQMQDG SLNPRDHLSK TKQITSVSPC BACU014880/1-682 KVQGKGSLSC PLHASRGVLS FFSTKQMQDG SLNPRDHLSN TKQISSVSPC 601 650 ENSBTAP00000012034/1-701 EPGTSG--GS SSSYVSSQKE YSHYLDSSLK DERMSQGPKE SQRFHFSNTN ENSP00000462664/1-740 EPGTSGFNSS SSSYMSSQKD YSYYLDNRLK DERISQGPKE PQGFHFTNSN ENSTTRP00000013886/1-738 EPGTSGLNSS SSSYVSSQKD YSHYIDSNLK DELMSQGPKE SQGFHFSKTD bmy_16884T0/1-672 EPGTSGLNSS SSSYVSNQKD YSHYVDSSLK DELMSQGPKE SKGFHFSKTD BACU014880/1-682 EPGTSGLNSS SSSYVSNQKD YSHYIDSSLK DELMSQGPKE SQGFHFSKTD 651 700 ENSBTAP00000012034/1-701 PAVSVFHSFP NLQSEQLLSK NRTTDSHKQP VATVSRHEGL KENREQESPD ENSP00000462664/1-740 PAVSAFHSFP NLQSEQLFSR NHTTDSHKQT VATDS-HEGL TENREPDSVD ENSTTRP00000013886/1-738 PAVSVFHSFP NVQSEQLFSK NCTTDSHKQP MATVFIHEGL TENREQDSTK bmy_16884T0/1-672 PAVSVFHSFP NLQSEQLFSK NCTTDSHKPP MATVFIHEGL TENREQDSTE BACU014880/1-682 PAVSVFHSFP NLQSEQLFSK TCTTDSHKQP MATVFIHEGL TENREQDSTE 701 750 ENSBTAP00000012034/1-701 EKIAFPSDID PEVFYELPEE VQKELLADWK RTGSDFHTT- - ENSP00000462664/1-740 EKITFPSDID PQVFYELPEA VQKELLAEWK RAGSDFHIGH K ENSTTRP00000013886/1-738 EKITFPSDID PEVFYELPEE VQKELLADWK RTGSDFHTVH K bmy_16884T0/1-672 EKVTFPSDID PEVFYELPEE VQKELLADWK RTGSDFHTVH K BACU014880/1-682 EKVTFPSDID PEVFYELPEE VQKELLADWK RTGSDFHTVH K