KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:45:12 2014 Check: 00 .. Name: bmy_00116T0/1-1041 Len: 1770 Check: 7963 Weight: 1.00 Name: ENSBTAP00000011900/1-1726 Len: 1770 Check: 5493 Weight: 1.00 Name: ENSTTRP00000003860/1-1720 Len: 1770 Check: 1413 Weight: 1.00 Name: ENSP00000319104/1-1726 Len: 1770 Check: 5580 Weight: 1.00 // 1 50 bmy_00116T0/1-1041 MSDFVESEAE ESEEEYNDEG EVVPRVTKKF VEEEDDDEEE EEENLDDQDE ENSBTAP00000011900/1-1726 MSDFVESEAE ESEEEYNDEG EVVPRVNKKF VEEEDDDEEE EEENLDDQDE ENSTTRP00000003860/1-1720 MSDFVESEAE ESEEEYNDEG EVVPRVTKKF VEEEDDDEEE EEENLDDQDE ENSP00000319104/1-1726 MSDFVESEAE ESEEEYNDEG EVVPRVTKKF VEEEDDDEEE EEENLDDQDE 51 100 bmy_00116T0/1-1041 QGNLKGFIND DDDEDEGEED EGSDSGDSED DVGHKKRKRT SFDDRLEDDD ENSBTAP00000011900/1-1726 QGNLKGFIND DDDEEEGEED EGSDSGDSED EVSHKKRKRT SFDDRLEDDD ENSTTRP00000003860/1-1720 QGNLKGFIND DDDEDEGEED EGSDSGDSED DVGHKKRKRT SFDDRLEDDD ENSP00000319104/1-1726 QGNLKGFIND DDDEDEGEED EGSDSGDSED DVGHKKRKRT SFDDRLEDDD 101 150 bmy_00116T0/1-1041 FDLIEENLGV KVKRGQKYRR VKKMSDDEDD DEEEYGKEEH EKEAIAEEIF ENSBTAP00000011900/1-1726 FDLIEENLGV KVKRGQKYRR VKKVSDDEDD EEEEYGKEEH EKEAIAEEIF ENSTTRP00000003860/1-1720 FDLIEENLGV KVKRGQKYRR VKKMSDDEDD DEEEYGKEEH EKEAIAEEIF ENSP00000319104/1-1726 FDLIEENLGV KVKRGQKYRR VKKMSDDEDD DEEEYGKEEH EKEAIAEEIF 151 200 bmy_00116T0/1-1041 QDGEGEEGQE AVEAPMAPPE EEEEDDEESD IDDFIVDDDG QPLKKPKWRK ENSBTAP00000011900/1-1726 QDGEGEEGQE AVEAHMAPPE EEEEDDEESD IDDFIVDDDG QPLKKPKWRK ENSTTRP00000003860/1-1720 QDGEGEEGQE AVEAPMAPPE EEEEDDEESD IDDFIVDDDG QPLKKPKWRK ENSP00000319104/1-1726 QDGEGEEGQE AMEAPMAPPE EEEEDDEESD IDDFIVDDDG QPLKKPKWRK 201 250 bmy_00116T0/1-1041 KLPGYTDAYR ISAGAAFVSS HRNLGHLPFA LTHRALQEAQ EIFGVDFDYD ENSBTAP00000011900/1-1726 KLPGYTDA-- ---------- ---------- ----ALQEAQ EIFGVDFDYD ENSTTRP00000003860/1-1720 KLPGYTDA-- ---------- ---------- ----ALQEAQ EIFGVDFDYD ENSP00000319104/1-1726 KLPGYTDA-- ---------- ---------- ----ALQEAQ EIFGVDFDYD 251 300 bmy_00116T0/1-1041 EFEKYNEYDE ELEEEYEYED DEAEGEIRVR PKKTTKKRVS RRSIFEMYEP ENSBTAP00000011900/1-1726 EFEKYNEYDE ELEEEYEYED DEAEGEIRVR PKKTTKKRVS RRSIFEMYEP ENSTTRP00000003860/1-1720 EFEKYNEYDE ELEEEYEYED DEAEGEIRVR PKKTTKKRVS RRSIFEMYEP ENSP00000319104/1-1726 EFEKYNEYDE ELEEEYEYED DEAEGEIRVR PKKTTKKRVS RRSIFEMYEP 301 350 bmy_00116T0/1-1041 SELESSHLTD QDNEIRATDL PERFQLRSIS VKGAEDDELE EEADWIYRNA ENSBTAP00000011900/1-1726 SELESSHLTD QDNEIRATDL PERFQLRSIP VKGAEDDELE EEADWIYRNA ENSTTRP00000003860/1-1720 SELESSHLTD QDNEIRATDL PERFQLRSIS VKGAEDDELE EEADWIYRNA ENSP00000319104/1-1726 SELESSHLTD QDNEIRATDL PERFQLRSIP VKGAEDDELE EEADWIYRNA 351 400 bmy_00116T0/1-1041 FATPTISLQE SCDYLDRGQP TSSFSRKGPS TIQKIKEALG FMRNQHFEVA ENSBTAP00000011900/1-1726 FATPTISLQE SCDYLDRGQP TSSFSRKGPS TIQKIKEALG FMRNQHFE-- ENSTTRP00000003860/1-1720 FATPTISLQE SCDYLDRGQP TSSFSRKGPS TIQKIKEALG FMRNQHFE-- ENSP00000319104/1-1726 FATPTISLQE SCDYLDRGQP ASSFSRKGPS TIQKIKEALG FMRNQHFE-- 401 450 bmy_00116T0/1-1041 PQALVAHWLE LQLGVPFIAF YRKEYVEPEL HINDLWRVWQ WDEKWTQLRI ENSBTAP00000011900/1-1726 ---------- ----VPFIAF YRKEYVEPEL HINDLWRVWQ WDEKWTQLRI ENSTTRP00000003860/1-1720 ---------- ----VPFIAF YRKEYVEPEL HINDLWRVWQ WDEKWTQLRI ENSP00000319104/1-1726 ---------- ----VPFIAF YRKEYVEPEL HINDLWRVWQ WDEKWTQLRI 451 500 bmy_00116T0/1-1041 RKENLTRLFE KMQAYQYEQI SADPDKPLAD GIRALDTTDM ERLKDVQSMD ENSBTAP00000011900/1-1726 RKENLTRLFE KMQAYQYEQI SADPDKPLAD GIRALDTTDM ERLKDVQSMD ENSTTRP00000003860/1-1720 RKENLTRLFE KMQAYQYEQI SADPDKPLAD GIRALDTTDM ERLKDVQSMD ENSP00000319104/1-1726 RKENLTRLFE KMQAYQYEQI SADPDKPLAD GIRALDTTDM ERLKDVQSMD 501 550 bmy_00116T0/1-1041 ELKDVYNHFL LYYGRDIPKM QNAAKASRKK LKRVREEGDE E--------- ENSBTAP00000011900/1-1726 ELKDVYNHFL LYYGRDIPKM QNAAKASRKK LKRVREEGDE EGDGEEAEDE ENSTTRP00000003860/1-1720 ELKDVYNHFL LYYGRDIPKM QNAAKASRKK LKRVREEGDG E----EAEDE ENSP00000319104/1-1726 ELKDVYNHFL LYYGRDIPKM QNAAKASRKK LKRVREEGDE EGEGDEAEDE 551 600 bmy_00116T0/1-1041 ---------- ---------- ----DGLAKK FGLTPEQFGE NLRDSYQRHE ENSBTAP00000011900/1-1726 EQRGPELKQA SRRDMYTICQ SAGLDGLAKK FGLTPEQFGE NLRDSYQRHE ENSTTRP00000003860/1-1720 EQRGPELKQA SRRDMYTICQ SAGLDGLAKK FGLTPEQFGE NLRDSYQRHE ENSP00000319104/1-1726 EQRGPELKQA SRRDMYTICQ SAGLDGLAKK FGLTPEQFGE NLRDSYQRHE 601 650 bmy_00116T0/1-1041 TEQFPAEPLE LAKDYVCSQF PTPEAVLEGA RYMVALQIAR EPLVRQVLRQ ENSBTAP00000011900/1-1726 TEQFPAEPLE LAKDYVCSQF PTPEAVLEGA RYMVALQIAR EPLVRQVLRQ ENSTTRP00000003860/1-1720 TEQFPAEPLE LAKDYVCSQF PTPEAVLEGA RYMVALQIAR EPLVRQVLRQ ENSP00000319104/1-1726 TEQFPAEPLE LAKDYVCSQF PTPEAVLEGA RYMVALQIAR EPLVRQVLRQ 651 700 bmy_00116T0/1-1041 TFQERAKLNI TPTKKGRKDV DEAHYSYSFK YLKNKPVKEL RDDQFLKICL ENSBTAP00000011900/1-1726 TFQERAKLNI SPTKKGRKDV DEAHYAYSFK YLKNKPVKEL RDDQFLKICL ENSTTRP00000003860/1-1720 TFQERAKLNI TPTKKGRKDV DEAHYAYSFK YLKNKPVKEL RDDQFLKICL ENSP00000319104/1-1726 TFQERAKLNI TPTKKGRKDV DEAHYAYSFK YLKNKPVKEL RDDQFLKICL 701 750 bmy_00116T0/1-1041 AEDEGLLTID ISIDMKGVEG YGNDQTYFEE IKQFYYRDEF SHQVQEWNRQ ENSBTAP00000011900/1-1726 AEDEGLLTID ISIDMKGVEG YGSDQTYFEE IKQFYYRDEF SHQVQEWNRQ ENSTTRP00000003860/1-1720 AEDEGLLTID ISIDMKGVEG YGNDQTYFEE IKQFYYRDEF SHQVQEWNRQ ENSP00000319104/1-1726 AEDEGLLTTD ISIDLKGVEG YGNDQTYFEE IKQFYYRDEF SHQVQEWNRQ 751 800 bmy_00116T0/1-1041 RTMAIERALQ QFLYVQMAKE LKNKLLAEAK EYVIKACSRK LYNWLRVAPY ENSBTAP00000011900/1-1726 RTMAIERALQ QFLYVQMAKE LKNKLLAEAK EYVIKACSRK LYNWLRVAPY ENSTTRP00000003860/1-1720 RTMAIERALQ QFLYVQMAKE LKNKLLAEAK EYVIKACSRK LYNWLRVAPY ENSP00000319104/1-1726 RTMAIERALQ QFLYVQMAKE LKNKLLAEAK EYVIKACSRK LYNWLRVAPY 801 850 bmy_00116T0/1-1041 RPDQQVEEDD DFMDENQGKG IRVLGIAFSS ARDHPVFCSL VNGEGEVTDF ENSBTAP00000011900/1-1726 RPDQQVEEDD DFMDENQGKG IRVLGIAFSS ARDHPVFCAL VNGEGEVTDF ENSTTRP00000003860/1-1720 RPDQQVEEDD DFMDENQGKG IRVLGIAFSS ARDHPVFCAL VNGEGEVTDF ENSP00000319104/1-1726 RPDQQVEEDD DFMDENQGKG IRVLGIAFSS ARDHPVFCAL VNGEGEVTDF 851 900 bmy_00116T0/1-1041 LRLPHFTKRR TAWREEEREK KA-------K ISLTSTPH-- ----SSRDAQ ENSBTAP00000011900/1-1726 LRLPHFTKRR TAWREEEREK KAQDIETLKK FLLNKKPHVV TVAGENRDAQ ENSTTRP00000003860/1-1720 LRLPHFTKRR TAWREEEREK KAQDIETLKK FLLNKKPHVV TVAGENRDAQ ENSP00000319104/1-1726 LRLPHFTKRR TAWREEEREK KAQDIETLKK FLLNKKPHVV TVAGENRDAQ 901 950 bmy_00116T0/1-1041 MLIEDVKRIV HELDQGQQLS SIGVELIDNE LAILYMNSKK SEAEFRDYPP ENSBTAP00000011900/1-1726 MLIEDVKRIV HELDQGQQLS SIGVELIDNE LAILYMNSKK SEAEFRDYPP ENSTTRP00000003860/1-1720 MLI-DVKRIV HELDQ-QQLS SMDEEL-NDE LAL-YMNSKK SEAEFRDYPP ENSP00000319104/1-1726 MLIEDVKRIV HELDQGQQLS SIGVELVDNE LAILYMNSKK SEAEFRDYPP 951 1000 bmy_00116T0/1-1041 VLRQAVSLAR RIQDPLIEFA QVCSSDEDIL CLKFHPLQEH VVKEELLNAL ENSBTAP00000011900/1-1726 VLRQAVSLAR RIQDPLIEFA QVCSSDEDIL CLKFHPLQEH VVKEELLNAL ENSTTRP00000003860/1-1720 VLRQAVSLAR RIQDPLIEFA QVCSSDEDIL CLKFHPLQEH VVKEELLNAL ENSP00000319104/1-1726 VLRQAVSLAR RIQDPLIEFA QVCSSDEDIL CLKFHPLQEH VVKEELLNAL 1001 1050 bmy_00116T0/1-1041 YCEFINRVNE VGVDVNRAIA HPYSQALIQY VCGLGPRKGT HLLKILKQNN ENSBTAP00000011900/1-1726 YCEFINRVNE VGVDVNRAIA HPYSQALIQY VCGLGPRKGT HLLKILKQNN ENSTTRP00000003860/1-1720 YCEFINRVNE VGVDVNRAIA HPYSQALIQY VCGLGPRKGT HLLKILKQNN ENSP00000319104/1-1726 YCEFINRVNE VGVDVNRAIA HPYSQALIQY VCGLGPRKGT HLLKILKQNN 1051 1100 bmy_00116T0/1-1041 TRLESRTQLV TMCHMGPKVF MNCAGFLKID TASLG----- ---------- ENSBTAP00000011900/1-1726 TRLESRTQLV TMCHMGPKVF MNCAGFLKID TASLGDSTDS YIEVLDGSRV ENSTTRP00000003860/1-1720 TRLESRTQLV TMCHMGPKVF MNCAGFLKID TASLGDSTDS YIEVLDGSRV ENSP00000319104/1-1726 TRLESRTQLV TMCHMGPKVF MNCAGFLKID TASLGDSTDS YIEVLDGSRV 1101 1150 bmy_00116T0/1-1041 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011900/1-1726 HPETYEWARK MAVDALEYDE SAEDANPAGA LEEILENPER LKDLDLDAFA ENSTTRP00000003860/1-1720 HPETYEWARK MAVDALEYDE SAEDANPAGA LEEILENPER LKDLDLDAFA ENSP00000319104/1-1726 HPETYEWARK MAVDALEYDE SAEDANPAGA LEEILENPER LKDLDLDAFA 1151 1200 bmy_00116T0/1-1041 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011900/1-1726 EELERQGYGD KHITLYDIRA ELSCRYKDLR TAYRSPNTEE IFNMLTKETP ENSTTRP00000003860/1-1720 EELERQGYGD KHITLYDIRA ELSCRYKDLR TAYRSPNTEE IFNMLTKETP ENSP00000319104/1-1726 EELERQGYGD KHITLYDIRA ELSCRYKDLR TAYRSPNTEE IFNMLTKETP 1201 1250 bmy_00116T0/1-1041 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011900/1-1726 ETFYIGKLII CNVTGIAHRR PQGESYDQAI RNDETGLWQC PFCQQDNFPE ENSTTRP00000003860/1-1720 ETFYIGKLII CNVTGIAHRR PQGESYDQAI RNDETGLWQC PFCQQDNFPE ENSP00000319104/1-1726 ETFYIGKLII CNVTGIAHRR PQGESYDQAI RNDETGLWQC PFCQQDNFPE 1251 1300 bmy_00116T0/1-1041 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011900/1-1726 LSEVWNHFDS GSCPGQAIGV KTRLDNGVTG FIPTKFLSDK VVKRPEERVK ENSTTRP00000003860/1-1720 LSEVWNHFDS GSCPGQAIGV KTRLDNGVTG FIPTKFLSDK VVKRPEERVK ENSP00000319104/1-1726 LSEVWNHFDS GSCPGQAIGV KTRLDNGVTG FIPTKFLSDK VVKRPEERVK 1301 1350 bmy_00116T0/1-1041 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011900/1-1726 VGMTVHCRIM KIDIEKFSAD LTCRTSDLMD RNNEWKLPKD TYYDFDAEAA ENSTTRP00000003860/1-1720 VGMTVHCRIM KIDIEKFSAD LTCRTSDLMD RNNEWKLPKD TYYDFDAEAA ENSP00000319104/1-1726 VGMTVHCRIM KIDIEKFSAD LTCRTSDLMD RNNEWKLPKD TYYDFDAEAA 1351 1400 bmy_00116T0/1-1041 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011900/1-1726 DHKQEEDMKR KQQRTTYIKR VIAHPSFHNI NFKQAEKMME TMDQGDVIIR ENSTTRP00000003860/1-1720 DHKQEEDMKR KQQRTTYIKR VIAHPSFHNI NFKQAEKMME TMDQGDVIIR ENSP00000319104/1-1726 DHKQEEDMKR KQQRTTYIKR VIAHPSFHNI NFKQAEKMME TMDQGDVIIR 1401 1450 bmy_00116T0/1-1041 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011900/1-1726 PSSKGENHLT VTWKVSDGIY QHVDVREEGK ENAFSLGATL WINSEEFEDL ENSTTRP00000003860/1-1720 PSSKGENHLT VTWKVSDGIY QHVDVREEGK ENAFSLGATL WINSEEFEDL ENSP00000319104/1-1726 PSSKGENHLT VTWKVSDGIY QHVDVREEGK ENAFSLGATL WINSEEFEDL 1451 1500 bmy_00116T0/1-1041 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011900/1-1726 DEIVARYVQP MASFARDLLN HKYYQDCSGG DRKKLEELLI KTKKEKPTFI ENSTTRP00000003860/1-1720 DEIVARYVQP MASFARDLLN HKYYQDCSGG DRKKLEELLI KTKKEKPTFI ENSP00000319104/1-1726 DEIVARYVQP MASFARDLLN HKYYQDCSGG DRKKLEELLI KTKKEKPTFI 1501 1550 bmy_00116T0/1-1041 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011900/1-1726 PYFICACKEL PGKFLLGYQP RGKPRIEYVT VTPEGFRYRG QVFPTVNGLF ENSTTRP00000003860/1-1720 PYFICACKEL PGKFLLGYQP RGKPRIEYVT VTPEGFRYRG QIFPTVNGLF ENSP00000319104/1-1726 PYFICACKEL PGKFLLGYQP RGKPRIEYVT VTPEGFRYRG QIFPTVNGLF 1551 1600 bmy_00116T0/1-1041 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011900/1-1726 RWFKDHYQDP VPGITPSSSS RTRTPASINA TPANINLADL TRAVNALPQN ENSTTRP00000003860/1-1720 RWFKDHYQDP VPGITPSSSS RTRTPASINA TPANINLADL TRAVNALPQN ENSP00000319104/1-1726 RWFKDHYQDP VPGITPSSSS RTRTPASINA TPANINLADL TRAVNALPQN 1601 1650 bmy_00116T0/1-1041 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011900/1-1726 MTSQMFNAIA AVTGQGQNPN ATPAQWASSQ YGYGGSGGGS SAYHVFPTPA ENSTTRP00000003860/1-1720 MTSQVFSAIA AVTGQGQNPN ATPAQWASSQ YGYGGSGGGS SAYHVFPTPA ENSP00000319104/1-1726 MTSQMFSAIA AVTGQGQNPN ATPAQWASSQ YGYGGSGGGS SAYHVFPTPA 1651 1700 bmy_00116T0/1-1041 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011900/1-1726 QQPVATPLMT PSYSYTTPSQ PITTPQYHQL QASTTPQSA- -QAQPQPSSS ENSTTRP00000003860/1-1720 QQPVATPLMT PSYSYTTPSQ PITTPQYHQL QASTTPQSAQ PQPQPQPSSS ENSP00000319104/1-1726 QQPVATPLMT PSYSYTTPSQ PITTPQYHQL QASTTPQSA- -QAQPQPSSS 1701 1750 bmy_00116T0/1-1041 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011900/1-1726 SRQRQQQPKS NSHAAIDWGK MAEQWLQEKE AERRKQKQRL TPRPSPSPMI ENSTTRP00000003860/1-1720 SRQRQQQPKS NSHAAIDWGK MAEQWLQEKE AERRKQKQRL TPRPSPSPMI ENSP00000319104/1-1726 SRQRQQQPKS NSHAAIDWGK MAEQWLQEKE AERRKQKQRL TPRPSPSPMI 1751 1800 bmy_00116T0/1-1041 ---------- --------DR ENSBTAP00000011900/1-1726 ESTPMSIAGD ATPLLDEMDR ENSTTRP00000003860/1-1720 ESTPMSIAGD ATPLLDEMDR ENSP00000319104/1-1726 ESTPMSIAGD ATPLLDEMDR