KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:44:58 2014 Check: 00 .. Name: ENSTTRP00000007506/1-293 Len: 340 Check: 4974 Weight: 1.00 Name: ENSP00000341658/1-235 Len: 340 Check: 8679 Weight: 1.00 Name: ENSBTAP00000011856/1-235 Len: 340 Check: 328 Weight: 1.00 Name: bmy_00520T0/1-276 Len: 340 Check: 2198 Weight: 1.00 Name: BACU015586/1-235 Len: 340 Check: 548 Weight: 1.00 // 1 50 ENSTTRP00000007506/1-293 ---------- ---------- ---------- ---------- -MTNG---VL ENSP00000341658/1-235 ---------- ---------- ---------- ---------- -MGNGMTKVL ENSBTAP00000011856/1-235 ---------- ---------- ---------- ---------- -MGNGMTKVL bmy_00520T0/1-276 TPGPPIPARL QAPGPGRQGS CDPCAQRVAS WGCARIPAPG IMGNGMTKVL BACU015586/1-235 ---------- ---------- ---------- ---------- -MGNGMTKVL 51 100 ENSTTRP00000007506/1-293 PGLYLGNFID AKDTDQLGRN KITHIISIHE SPQPLLQDIT YLRISVADAP ENSP00000341658/1-235 PGLYLGNFID AKDLDQLGRN KITHIISIHE SPQPLLQDIT YLRIPVADTP ENSBTAP00000011856/1-235 PGLYLGNFID AKDTDQLGRN KITHIISIHE SPQPLLQDIT YLRISVADAP bmy_00520T0/1-276 PGLYLGNFID AKDTDQLGRN KITHIISIHE SPQPLLQDIT YLRISVADAP BACU015586/1-235 PGLYLGNFID AKDTDQLGRN KITHIISIHE SPQPLLQDIT YLRISVADAP 101 150 ENSTTRP00000007506/1-293 EVPIKKHFKE CINFIHCCRL NGGNCLVHCF AGISRSTTIV TAYVMTVTGL ENSP00000341658/1-235 EVPIKKHFKE CINFIHCCRL NGGNCLVHCF AGISRSTTIV TAYVMTVTGL ENSBTAP00000011856/1-235 EVPIKKHFKE CINFIHCCRL NGGNCLVHCF AGISRSTTIV TAYVMTVTGL bmy_00520T0/1-276 EVPIKKHFKE CINFIHCCRL NGGNCLVHCF AGISRSTTIV TAYVMTVTGL BACU015586/1-235 EVPIKKHFKE CINFIHCCRL NGGNCLVHCF AGISRSTTIV TAYVMTVTGL 151 200 ENSTTRP00000007506/1-293 SWRDVLEAIK ATRPIANPNP GFRQQLEEFG WGSSRKGTRL RILLTPGAPC ENSP00000341658/1-235 GWRDVLEAIK ATRPIANPNP GFRQQLEEFG WASSQK---L RRQLEE---- ENSBTAP00000011856/1-235 SWRDVLEAIK ATRPIANPNP GFRQQLEEFG WGSSRK---L RRQLEE---- bmy_00520T0/1-276 SWRDVLEAIK ATRPIANPNP GFRQQLEEFG WGSSRK---L RRQLEE---- BACU015586/1-235 SWRDVLEAIK ATRPIANPNP GFRQQLEEFG WGSSRK---L RRQLEE---- 201 250 ENSTTRP00000007506/1-293 LLRTSATRFL ---AARATLL CAELVREATA RAAEGCSLSP RAAAAAAELL ENSP00000341658/1-235 --RFGESPFR DEEELRALLP LCKRCRQGSA TSASSAGPHS AASEGTVQRL ENSBTAP00000011856/1-235 --RFGESPFR DEEEVRALLP LCKRCRQGSA TAAASPAPNS TASEGTLQRL bmy_00520T0/1-276 --RFGESPFR DEEEVRALLP LCKRCRQGPA SAASSPAPNS SASEGTLQRL BACU015586/1-235 --RFGESPFR DEEEVRALLP LCKRCRQGSA SAASSPAPNS SASEGTLQRL 251 300 ENSTTRP00000007506/1-293 LGSPPRVAAW SPEPEYQIRL CFGEEYPGPP DQPEERLIMA HVEQSSRGSS ENSP00000341658/1-235 VPRTPREAHR -PLP------ ---------- -------LLA RVKQ------ ENSBTAP00000011856/1-235 VPRSPREAHR -PLP------ ---------- -------LLA RVKQ------ bmy_00520T0/1-276 VPRSPREAHR -PLP------ ---------- -------LLA RVKQ------ BACU015586/1-235 VPRSPREAHR -PLP------ ---------- -------LLA RVKQ------ 301 350 ENSTTRP00000007506/1-293 SYTRSSTARC LGGAFPANPD SVTHLRHSVS PEVVSPSRTR ENSP00000341658/1-235 ------TFSC L--------- ---------- PRCLSRKGGK ENSBTAP00000011856/1-235 ------TFSC L--------- ---------- PRCLSRKGSK bmy_00520T0/1-276 ------TFSC L--------- ---------- PRCLSRKGSK BACU015586/1-235 ------TFSC L--------- ---------- PRCLSRKGSK