KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:44:57 2014 Check: 00 .. Name: ENSTTRP00000014513/1-851 Len: 902 Check: 1859 Weight: 1.00 Name: ENSBTAP00000011843/1-896 Len: 902 Check: 1761 Weight: 1.00 Name: ENSP00000359788/1-861 Len: 902 Check: 7222 Weight: 1.00 Name: bmy_09186T0/1-873 Len: 902 Check: 4401 Weight: 1.00 Name: BACU005427/1-495 Len: 902 Check: 2552 Weight: 1.00 // 1 50 ENSTTRP00000014513/1-851 -MPILLFL-- -IDTSASMNQ RTDLGTSYLD IAKGAVELFL KLRARDPASR ENSBTAP00000011843/1-896 -MPILLFL-- -IDTSASMNQ RTDLGTSYLD IAKGAVELFL KLRARDPASR ENSP00000359788/1-861 -MPILLFL-- -IDTSASMNQ RTDLGTSYLD IAKGAVELFL KLRARDPASR bmy_09186T0/1-873 MSPLNLELYQ YLESNLRLSE CLKMPEGLSP HCCGSIPII- ---------- BACU005427/1-495 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000014513/1-851 GDRYMLVTYD EPPYCIKXXX XXXXXXXXSE LKNLQASGLT TLGQALR-AF ENSBTAP00000011843/1-896 GDRYMLVTYD EPPYCIKAGW KENHATFMSE LKNLQASGLT TLGQALRSSF ENSP00000359788/1-861 GDRYMLVTYD EPPYCIKAGW KENHATFMSE LKNLQASGLT TLGQALRSSF bmy_09186T0/1-873 ---------- PPILLFKAGW KENHATFMSE LKNLQASGLT TLGQALRSSF BACU005427/1-495 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000014513/1-851 DLLNLNRLIS GIDNYGQGRN PFFLEPSILI TITDGNKLTS TAGVQEELHL ENSBTAP00000011843/1-896 DLLNLNRLIS GIDNYGQGRN PFFLEPSILI TITDGNKLTS TSGVQEELHL ENSP00000359788/1-861 DLLNLNRLIS GIDNYGQGRN PFFLEPSILI TITDGNKLTS TAGVQEELHL bmy_09186T0/1-873 DLLNLNRLIS GIDNYGQGRN PFFLEPSILI TITDGNKLTS TAGVQEELHL BACU005427/1-495 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000014513/1-851 PLNSPLPGSE LTKEPFRWDQ RLFALVLRLP GLASTEPEQL GSVPTDESAI ENSBTAP00000011843/1-896 PLNSPLPGSE LTKEPFRWDQ RLFALVLRLP GLASTEPEQI GSVPTDESAI ENSP00000359788/1-861 PLNSPLPGSE LTKEPFRWDQ RLFALVLRLP GVASTEPEQL GSVPTDESAI bmy_09186T0/1-873 PLNSPLPGSE LTKEPFRWDQ RLFALVLRLP GLASTEPEQL GSVPTDESAI BACU005427/1-495 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000014513/1-851 TQMCEVTGGR SYCVRTQRML NQCLESLVQK VQSGVVINFE KTGPDPLPIG ENSBTAP00000011843/1-896 TQMCEVTGGR SYCVRTQRML NQCLESLVQK VQSGVVINFE KTGPDPLPIG ENSP00000359788/1-861 TQMCEVTGGR SYCVRTQRML NQCLESLVQK VQSGVVINFE KTGPDPLPIG bmy_09186T0/1-873 TQMCEVTGGR SYCVRTQRML NQCLESLVQK VQSGVVINFE KTGPDPLPIG BACU005427/1-495 ---------- --------ML NQCLESLVQK VQSGVVINFE KTGPDPLPIG 251 300 ENSTTRP00000014513/1-851 EXXXXXXXXX XXXXXXXXXX XXXKLIYVRP NSR-GVH--- ---PPDLLPD ENSBTAP00000011843/1-896 EDGLMDSSRP SNSFAAQPWH SCHKLIYVRP NSKTGVPVGH WPIPESFWPD ENSP00000359788/1-861 EDGLMDSSRP SNSFAAQPWH SCHKLIYVRP NSKTGVPVGH WPIPESFWPD bmy_09186T0/1-873 EDGLMDSSRP SNSFAAQPWH SCHKLIYVRP NSKTGVPVGH WPIPESFWPD BACU005427/1-495 EDGLMDSSRP SNSFAAQPWH SCHKLIYVRP NSKTGVPVGH WPIPESFWPD 301 350 ENSTTRP00000014513/1-851 QNLPSLPPRT SHPVVRFSCV DCEPMVIDKL PFDKYELEPS PLTQYILERK ENSBTAP00000011843/1-896 QNLPSLPPRT SHPIVRFSCI DCEPMVIDKL PFDKYELEPS PLTQYILERK ENSP00000359788/1-861 QNLPSLPPRT SHPVVRFSCV DCEPMVIDKL PFDKYELEPS PLTQYILERK bmy_09186T0/1-873 QNLPSLPPRT SHPVVRFSCV DCEPMVIDKL PFDKYELEPS PLTQYILERK BACU005427/1-495 QNLPSLPPRT SHPVVRFSCV DCEPMVIDKL PFDKYELEPS PLTQYILERK 351 400 ENSTTRP00000014513/1-851 SPHTCWQVFV TSSGKYNELG YPFGYLKAST TLTCVNLFVM PYNYPVLLPL ENSBTAP00000011843/1-896 SPHTCWQVFV TSSGKYNELG YPFGYLKAST TLTCVNLFVM PYNYPVLLPL ENSP00000359788/1-861 SPHTCWQVFV TSSGKYNELG YPFGYLKAST TLTCVNLFVM PYNYPVLLPL bmy_09186T0/1-873 SPHTCWQVFV TSSGKYNELG YPFGYLKAST TLTCVNLFVM PYNYPVLLPL BACU005427/1-495 SPHTCWQVFV TSSGKYNELG YPFGYLKAST TLTCVNLFVM PYNYPVLLPL 401 450 ENSTTRP00000014513/1-851 LDDLFKVHKL KPNVKWRQAF DSYLKTLPPY YLL------- ---------- ENSBTAP00000011843/1-896 LDDLFKVHKL KPNLKWRQAF DSYLKTLPPY YLLPLKKALR MMGAPNLISD ENSP00000359788/1-861 LDDLFKVHKL KPNLKWRQAF DSYLKTLPPY YLL------- ---------- bmy_09186T0/1-873 LDDLFKVHKL KPNVKWRQAF DSYLKTLPPY YLLPLKKALR MMGAPNLISD BACU005427/1-495 LDDLFKVHKL KPNVKWRQAF DSYLKTLPPY YLLPLKKALR MMGAPNLISD 451 500 ENSTTRP00000014513/1-851 ---------- ---------- TKLESERILA SVGKKPPQEI GIKVKNHSGG ENSBTAP00000011843/1-896 NLDCGLSYSV ISYLKKLSQQ TKLESERILA SVGKKPPQEI GIKVKNHSGG ENSP00000359788/1-861 ---------- ---------- TKLESERILA SVGKKPPQEI GIKVKNHSGG bmy_09186T0/1-873 NLDCGLSYSV ISYLKKLSQQ TKLESERILA SVGKKPPQEI GIKVKNHSGG BACU005427/1-495 NLDCGLSYSV ISYLKKLSQQ TKLESERILA SVGKKPPQEI GIKVKNHSGG 501 550 ENSTTRP00000014513/1-851 GVSLTHNKNF RKLLKEIIGE TAPRLAELNT KEFAGFQVGL LNKDLKPQTY ENSBTAP00000011843/1-896 GVSLTHNKNF RKLLKEIIGD TAPRLTELNT KEFAGFQVGL LNKDLKPQTY ENSP00000359788/1-861 GMSLTHNKNF RKLLKEITGE TALRLTELNT KEFAGFQIGL LNKDLKPQTY bmy_09186T0/1-873 GVSLTHNKNF RKLLKEIIGE TAPRLAELNT KEFAGFQ--- ---DLKPQTY BACU005427/1-495 GVSLTHNKNF RKLLKEIIGE TAPRLAELNT KEFAGFQVGL LNKDLKPQTY 551 600 ENSTTRP00000014513/1-851 RNAYDIPRRG LLDQLTRMRS NLLKTHKFIV GQDEDSLHSV PVAQMGNYQE ENSBTAP00000011843/1-896 RNAYDIPRRD LLDQLTRMRS NLLKTHKFIV GQDEDSLHSV PVAQMGNYQE ENSP00000359788/1-861 RNAYDIPRRG LLDQLTRMRS NLLKTHKFIV GQDEDSLHSV PVAQMGNYQE bmy_09186T0/1-873 RNAYDIPRRG LLDQLTRMRS NLLKTHKFIV GQDEDSLHSV PVAQMGNYQE BACU005427/1-495 RNAYDIPRIG LLDQLTRMRS NLLKTQKFIV GQDEDSLHSV PVAQMGNYQE 601 650 ENSTTRP00000014513/1-851 YLKTLASPLR EIDPDQPKRL HTFGNPFKQD KKGMMIDEAD EFVTGPQNKV ENSBTAP00000011843/1-896 YLKTLASPLR EIDPDQPKRL HTFGNPFKQD KKGMMIDEAD EFVAGPQKKV ENSP00000359788/1-861 YLKTLASPLR EIDPDQPKRL HTFGNPFKQD KKGMMIDEAD EFVAGPQNKV bmy_09186T0/1-873 YLKTLASPLR EIDPDQPKRL HTFGNPFKQD KKGMMIDEAD EFVTGPQNKV BACU005427/1-495 YLKTLASPLR EIDPDQPKRL HTFGNPFKQD KKGMMIDEAD EFVTGPQNKV 651 700 ENSTTRP00000014513/1-851 KRPGEPSSPL SSKRRRSMSL LLRKPQTPPT VTNHVGGKGP PSASWFPSYP ENSBTAP00000011843/1-896 KRPGEVNSAL SSKRRRSMSL LLRKPQTPPT VTNHVGGKGP PSASWFPSYS ENSP00000359788/1-861 KRPGEPNSPM SSKRRRSMSL LLRKPQTPPT VTNHVGGKGP PSASWFPSYP bmy_09186T0/1-873 KRPGEPSSPL SSKRRRSMSL LLRKPQTPPT VTNHVGGKGP PSASWFPSYP BACU005427/1-495 KRPGEPSSPL SSKRRRSMSL LLRKPQTPPT VTNHVGGKGP PSASWFPSYP 701 750 ENSTTRP00000014513/1-851 NLIKPTLVHT DVTVTHDVH- EKMENGQISP DGFLSKSAAP ELMNMAGDSI ENSBTAP00000011843/1-896 NLIKPTLVYT GVTVTHDVHE EKMENGQISP DGFLSKSASP ELMNMAGDGI ENSP00000359788/1-861 NLIKPTLVHT DATIIHDGHE EKMENGQITP DGFLSKSAPS ELINMTGDLM bmy_09186T0/1-873 NLIKPTLVHT DVTVTHDAHE EKMENGQISP DGFLSKSAAP ELMNMAGDSI BACU005427/1-495 NLIKPTLVHT GIE------- ---------- ---------- ---------- 751 800 ENSTTRP00000014513/1-851 PPDQVDCLSD DFTSLRKDDL MHNPGSNAVI GGTKNCSVSV DDRKVSVTSA ENSBTAP00000011843/1-896 PPDQVDSLSD DFTSLREDGP MHKPGSNALP GETKNCSVSV DDQKVSVTSA ENSP00000359788/1-861 PPNQVDSLSD DFTSLSKDGL IQKPGSNAFV GGAKNCSLSV DDQKDPVAST bmy_09186T0/1-873 PPDQVDSLSD DFTSLRKDGL MHSPGSNALX GGTKNCNVSV EDRKVSVTSA BACU005427/1-495 ---------- ---------- ---------- ---------- ---------- 801 850 ENSTTRP00000014513/1-851 LETGPNTSQI TPAMAQGINA DIKHQLMKEV RKFGRXXXXX XXXXXXXXXX ENSBTAP00000011843/1-896 LETVPSTLQI TPAMAQGINA DIKHQLMKEV RKFGRKYERI FTLLEGVQGP ENSP00000359788/1-861 LGAMPNTLQI TPAMAQGINA DIKHQLMKEV RKFGRKYERI FILLEEVQGP bmy_09186T0/1-873 LETGPNMLQI TPAMAQGINA DIKHQLMKEV RKFGRKYERI FILLEGVQGP BACU005427/1-495 ---------- ---------- ---------- ---------- ---------- 851 900 ENSTTRP00000014513/1-851 XXXXXXXXXX XXXXXXXFKR RVLIQYLEKL LEKIESHHLL NNVNHINSRS ENSBTAP00000011843/1-896 LAVKKQFVEF TIKEAARFKR RVLIQYLEKV LEKIESYHLL NNVNHINSRS ENSP00000359788/1-861 LEMKKQFVEF TIKEAARFKR RVLIQYLEKV LEKINSHHLH NNISHINSRS bmy_09186T0/1-873 LAVRKQFVEF TIKEAARFKR RVLIQYLEKV LEKIESHHLL NNVNHINNRS BACU005427/1-495 ---------- ---------- ---------- ---------- ---------- 901 950 ENSTTRP00000014513/1-851 -C ENSBTAP00000011843/1-896 -- ENSP00000359788/1-861 SC bmy_09186T0/1-873 -- BACU005427/1-495 --