KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:44:26 2014 Check: 00 .. Name: ENSP00000374484/1-555 Len: 555 Check: 4009 Weight: 1.00 Name: bmy_15852T0/1-499 Len: 555 Check: 1061 Weight: 1.00 Name: ENSBTAP00000011671/1-555 Len: 555 Check: 7521 Weight: 1.00 Name: BACU018637/1-477 Len: 555 Check: 3046 Weight: 1.00 Name: ENSTTRP00000002399/1-555 Len: 555 Check: 7421 Weight: 1.00 // 1 50 ENSP00000374484/1-555 MAAAAWLQVL PVILLLLGAH PSPLSFFSAG PATVAAADRS KWHIPIPSGK bmy_15852T0/1-499 MAAAAWLQVL PVILLLLGAQ TSPLSLFSVG PAPVAAADRS KWHIPIPSGK ENSBTAP00000011671/1-555 MAVAAWLQVV PVILLLLGAR TSPLSLFSVG PAPVAAAERS KWHIPIPSAK BACU018637/1-477 MAAAAWLQVL PVILLLLGAQ TSPLSLFSVG PAPVAAADRS KWHIPIPSGK ENSTTRP00000002399/1-555 MAAAAWLQVL PVILLLLGAQ TSPLSLFSVG PAPVAAADRS KWHIPIPSRK 51 100 ENSP00000374484/1-555 NYFSFGKILF RNTTIFLKFD GEPCDLSLNI TWYLKSADCY NEIYNFKAEE bmy_15852T0/1-499 NYFSFGKILF KNTTIFLKFD GEPCDVSLNI TWYLKSADCY NEIYNFKAEE ENSBTAP00000011671/1-555 NYFSFGKILF KNTTIFLKFD GEPCDASLNI TWYLKSADCY NEIYNFKLEE BACU018637/1-477 NYFSFGKILF KNTTIFLKFD GEPCDVSLNI TWYLKSADCY NEIYNFKAEE ENSTTRP00000002399/1-555 NYFSFGKILF KNTTIFVKFD GEPCDVSLNI TWYLKSADCY NEIYNFKAEE 101 150 ENSP00000374484/1-555 VELYLEKLKE KRGLSGKYQT SSKLFQNCSE LFKTQTFSGD FMHRLPLLGE bmy_15852T0/1-499 VETYLENLKE KKGLSGKYQT SSKLFQNCSE LFKTQSFSGD FVHRLPLLGE ENSBTAP00000011671/1-555 VDTYLENLKE KKGLSGKYET SSKLFQNCSE LFKAQSFSGD FVHRLPLLGE BACU018637/1-477 VETYLENLKE KKGLSGKYQT SSKLFQNCSE LFKTQSFSGD FVHRLPLLGE ENSTTRP00000002399/1-555 VETYLENLKE KKGLSGKYQT SSKLFQNCSE LFKTQSFSGD FVHRLPLLGE 151 200 ENSP00000374484/1-555 KQEAKENGTN LTFIGDKTAM HEPLQTWQDA PYIFIVHIGI SSSKESSKEN bmy_15852T0/1-499 KQEAKENGTN LTFTGDKTV- ---------- ---------- ---------- ENSBTAP00000011671/1-555 RQEAKENGTN LTFTGDKTVM HDPLKTWQDA PYIFIVHVGI SSSKESSKEN BACU018637/1-477 KQEAKENGTN LTFTGDKTVM HEPLKTWQDA PYIFIVHVGI SPSKESSKEN ENSTTRP00000002399/1-555 KQEAKENGTN LTFTGDKTVM HEPLKTWQDA PYIFIVHVGI SPSKESSKEN 201 250 ENSP00000374484/1-555 SLSNLFTMTV EVKGPYEYLT LEDYPLMIFF MVMCIVYVLF GVLWLAWSAC bmy_15852T0/1-499 -------MTV EVKGPYEYLT LEEYPLMIFF MVMCIVYVLF GVLWLAWSAC ENSBTAP00000011671/1-555 SRSTLFTMTV EVKGPYEYLT LEEYPLMIFF MVMCIVYVLF GVLWLAWSAC BACU018637/1-477 SLSNLFTMTV EVKGPYEYLT LEEYPLMIFF MVMCIVYVLF GVLWLAWSAC ENSTTRP00000002399/1-555 SLSNLFTMTV EVKGPYEYLT LEEYPLMIFF MVMCIVYVLF GVLWLAWSAC 251 300 ENSP00000374484/1-555 YWRDLLRIQF WIGAVIFLGM LEKAVFYAEF QNIRYKGESV QGALILAELL bmy_15852T0/1-499 YWRDLLRIQF WIGAVIFLGM LEKAVFYAEY QNIRYKGESV QGALILAELL ENSBTAP00000011671/1-555 YWRDLLRIQF WIGAVIFLGM LEKAVFYAEF QNIRYKGESV QGALILAELL BACU018637/1-477 YWRDLLRIQF WIGAVIFLGM LEKAVFYAEY QNIRYKGESV QGALILAELL ENSTTRP00000002399/1-555 YWRDLLRIQF WIGAVIFLGM LEKAVFYAEF QNIRYKGESV QGALILAELL 301 350 ENSP00000374484/1-555 SAVKRSLART LVIIVSLGYG IVKPRLGVTL HKVVVAGALY LLFSGMEGVL bmy_15852T0/1-499 SAVKRSLART LVIIVSLGYG IVKPRLGVTL HKVVVAGALY LLFSGMEGVL ENSBTAP00000011671/1-555 SAVKRSLART LVIIVSLGYG IVKPRLGVTL HKVVVAGALY LLFSGMEGVL BACU018637/1-477 SAVKRSLART LVIIVSLGYG IVKPRLGVTL HKVVVAGALY LLFSGMEGVL ENSTTRP00000002399/1-555 SAVKRSLART LVIIVSLGYG IVKPRLGVTL HKVVVAGALY LLFSGMEGVL 351 400 ENSP00000374484/1-555 RVTGAQTDLA SLAFIPLAFL DTALCWWIFI SLTQTMKLLK LRRNIVKLSL bmy_15852T0/1-499 RVTGAQTDLA SLAFIPLAFL DTALCWWISF SLDSLMAVY- ---------- ENSBTAP00000011671/1-555 RVTGAQTDLA SLAFIPLAFL DTALCWWIFI SLTQTMKLLK LRRNIVKLSL BACU018637/1-477 RVTGAQTDLA SLAFIPLAFL DTALCWWISF SLTQTMKLLK LRRNIVKLSL ENSTTRP00000002399/1-555 RVTGAQTDLA SLAFIPLAFL DTALCWWIFI SLTQTMKLLK LRRNIVKLSL 401 450 ENSP00000374484/1-555 YRHFTNTLIL AVAASIVFII WTTMKFRIVT CQSDWRELWV DDAIWRLLFS bmy_15852T0/1-499 -------FLL LEMASIVFII WTTMKFRIVT CQSDWRELWV DDAIWRLLFS ENSBTAP00000011671/1-555 YRHFTNTLIL AVAASIVFII WTTMKFRIVT CQSDWRELWV DDAIWRLLFS BACU018637/1-477 YRHFTNTLIL AVAASIVFII WTTMKFRIVT CQSDWRELWV DDAIWRLLFS ENSTTRP00000002399/1-555 YRHFTNTLIL AVAASIVFII WTTMKFRIVT CQSDWRELWV DDAIWRLLFS 451 500 ENSP00000374484/1-555 MILFVIMVLW RPSANNQRFA FSPLSEEEEE DEQKEPMLKE SFEGMKMRST bmy_15852T0/1-499 MILFVIMVLW RPSANNQRFA FSPLSEEEEE DEQKEPMLKE SFEGMKMRST ENSBTAP00000011671/1-555 MILFVIMVLW RPSANNQRFA FSPLSEEEEE DEQKEPMLKE SFEGMKMRST BACU018637/1-477 MILFVIMVLW RPSANNQRF- ---------- ---------- ---------- ENSTTRP00000002399/1-555 MILFVIMVLW RPSANNQRFA FSPLSEEEEE DEQKEPMLKE SFEGMKMRST 501 550 ENSP00000374484/1-555 KQEPNGNSKV NKAQEDDLKW VEENVPSSVT DVALPALLDS DEERMITHFE bmy_15852T0/1-499 KQEPNGNSKL NKAQEDDLKW VEENVPSSVT DVALPALLDS DEERMITHFE ENSBTAP00000011671/1-555 KQEPNGNSKV NKAQEDDLKW VEENVPSSVT DVALPALLDS DEERMITHFE BACU018637/1-477 -----GDSSY LRC------- ---------- ---------- ---------- ENSTTRP00000002399/1-555 KQEPNGNSKL NKAQEDDLKW VEENVPSSVT DVALPALLDS DEERMITHFE 551 600 ENSP00000374484/1-555 RSKME bmy_15852T0/1-499 RSKME ENSBTAP00000011671/1-555 RSKME BACU018637/1-477 ----- ENSTTRP00000002399/1-555 RSKME