KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:43:54 2014 Check: 00 .. Name: ENSP00000259050/1-704 Len: 708 Check: 5657 Weight: 1.00 Name: ENSBTAP00000011533/1-701 Len: 708 Check: 6109 Weight: 1.00 Name: bmy_05593T0/1-647 Len: 708 Check: 5769 Weight: 1.00 Name: BACU010069/1-358 Len: 708 Check: 5201 Weight: 1.00 Name: ENSTTRP00000000018/1-692 Len: 708 Check: 4097 Weight: 1.00 // 1 50 ENSP00000259050/1-704 MESKPSRIPR RISVQPSSSL SARMMSGSRG SSLNDTYHSR DSSFRLDSEY ENSBTAP00000011533/1-701 MESKPSRIPR RISVQPASSL SARLMSGSRG SGLNDTYHSR DSSFRLDSEY bmy_05593T0/1-647 ---------- ---------- ---------- ---------- --------ML BACU010069/1-358 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000018/1-692 MESKPSRIPR RISVQPSSSL SARMMSGSRG SSLNDTYHSR DSSFRLDSEY 51 100 ENSP00000259050/1-704 QSTSASASAS PFQSAWYSES EITQGARSRS QNQQRDHDSK RPKLSCTNCT ENSBTAP00000011533/1-701 Q--SASAAAS PFQPTWYSES EITQGARSRS QNQQRDHDSK RPKLSCTNCT bmy_05593T0/1-647 GSTSASASAL PFQSTWYSES EITQGARSRS QNQQRDHDSK RPKLSCTNCT BACU010069/1-358 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000018/1-692 QSTSASASAL PFQSTWYSES EITQGARSRS QNQQRDHDSK RPKLSCTNCT 101 150 ENSP00000259050/1-704 -TSAGRNVGN GLNTLSDSSW RHSQVPRSSS MVLGSFGTDL MRERRDLERR ENSBTAP00000011533/1-701 STSTGRSVGH GLNAVSDSTW RHSQVPRSSS VVLGSFGTDL MR-----ERR bmy_05593T0/1-647 STSAGRSVGH GLNAVSDSSW RHSQVPRSSS VVLGSFGTDL MR-----ERR BACU010069/1-358 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000018/1-692 STSAGRSVGH GLNAVSDSSW RHSQVPRSSP VVLGSFGTDL MR-----ERR 151 200 ENSP00000259050/1-704 TDSSISNLMD YSHRSGDFTT SSYVQDRVP- SYSQGARPKE NSMSTLQLNT ENSBTAP00000011533/1-701 TDSSISNLAD YSHRSGDFTT SSCVQDRVPS SYSQGARPKE NSLSTLQLSA bmy_05593T0/1-647 ADSSISNLMD YSHRSD---- ---VQDRVPS SYSQGARPKE NSLSTLQLNT BACU010069/1-358 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000018/1-692 ADSSISNLMD YSHRSGDFTT SSYVQDRVPS SYSQGARPKE NSLSTLQLNT 201 250 ENSP00000259050/1-704 SSTNHQLPSE HQTILSSRDS -RNSLRSNFS SRESESSRSN TQPGFSYSSS ENSBTAP00000011533/1-701 SSTNHQMPSE HQTIPCSRDS GRNSLRSNFS PRELESPQSS MQPGFSYTSN bmy_05593T0/1-647 PSTNHQMPSE HQTIPCSRDS GRNSLRSNFS PRELESPQSS IQSGFSYISN BACU010069/1-358 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000018/1-692 SSTNHQMPSE HQTIPCSRDS GRNSLRSNFS PRELESPQSS IQPGFSYISN 251 300 ENSP00000259050/1-704 RDEAPIISNS ERVVSSQRPF QESSDNEGRR TTRRLLSRIA SSMSSTFFSR ENSBTAP00000011533/1-701 RGETSTIGSS DRINSSHRSF QESSDNEGRR TTRRLLSRIA SSMSSTFFSR bmy_05593T0/1-647 RGETSTIGSS NRVGSSQRSF QESSDNEGRR TTRRLLSRIA SSMSSTFFSR BACU010069/1-358 ---------- ---------- ---------- ---------- --MSSTFFSR ENSTTRP00000000018/1-692 RGETSTIGSS NRVGSSQRSF QESSDNEGRR TTRRLLSRIA SSMSSTFFSR 301 350 ENSP00000259050/1-704 RSSQDSLNTR SLNSENSYVS PRILTASQSR SNVPSASEVP DNRASEASQG ENSBTAP00000011533/1-701 RSNQDSLNTR SLSSENSYVS PRILTGSQSR GNAASASDIP DNRASEASQG bmy_05593T0/1-647 RSSQDSLNTR SLSSENSYIS PRILTASQSR -NAASASDGP DNRASEASQG BACU010069/1-358 RSSQDSLNTR SLSSENSYIS PRILTASQSR -NAASASDGP DNRASEASQG ENSTTRP00000000018/1-692 RSSQDSLNTR SLSSENSYIS PRILTASQSR -NAASASDGP DNRASEASQG 351 400 ENSP00000259050/1-704 FRFLRRRWGL SSLSHNHSSE SDSENFNQES EGRNTGPWLS SSLRNRCTPL ENSBTAP00000011533/1-701 FRFLRRRWGL SSLSQNHNSE PDSQNFSQES EGRNTGPWLS SSLRNRCTPL bmy_05593T0/1-647 FRFLRRRWGL SSLSQNHSSE PDSEXFNQES EGRNTGPWLS SSLRNRCTPL BACU010069/1-358 FRFLRRRWGL SSLSQNHSSE PDSQNFNQES EGRNTGPWLS SSLRNRCTPL ENSTTRP00000000018/1-692 FRFLRRRWGL SSLSQNHSSE PDSQNFNQES EGRNTGPWLS SSLRNRCTPL 401 450 ENSP00000259050/1-704 FSRRRREGRD ESSRIPTSDT SSRS-HIFRR ESNEVVHLEA QNDPLGAAAN ENSBTAP00000011533/1-701 FSRRRREGRD ESSRISTSDI PSRSHHLFRR ESNEVVHLEA QSEPLGAGAN bmy_05593T0/1-647 FSRRRREGRD ESSRISTSDI PSRSHHIFRR ESNEVVHLEA QSDPLGATAS BACU010069/1-358 FSRRRREGRD ESSRISTSDI PSRSHHIFRR ESNEVVHLEA QSDPLGATAS ENSTTRP00000000018/1-692 FSRRRREGRD ESSRISTSDI PSRSHHIFRR ESNEVVHLEA QSDPLGATAS 451 500 ENSP00000259050/1-704 RPQASAASSS ATTGGSTSDS AQGGRNTGIS GILPGSLFRF AVPPALGSNL ENSBTAP00000011533/1-701 RPQASAAPSS VGTGDSPSDS TRSGRSTGIT GILPGSLFRF AVPPALGNNL bmy_05593T0/1-647 RPQASAAPSS AAAGGSIADS AHSGRSTGIT GILPGSLFRF AVPPALGSNL BACU010069/1-358 RPQASAAPSS AATGGSTSDA AHSGRSSGIT GILPGSLFRF AVPPALGSNL ENSTTRP00000000018/1-692 RPQASAAPSS AATGGSISDS AHGGRSTGIT GILPGSLFRF AVPPALGSNL 501 550 ENSP00000259050/1-704 TDNVMITVDI IPSGWNSADG KSDKTKSAPS RDPERLQKIK ESLLLEDSEE ENSBTAP00000011533/1-701 TDNVMITVDI IPSGWSSSDG KNDKTKNVPS RDPERLQKIK ESLLLEDSEE bmy_05593T0/1-647 TDNVMITVDI IPSGWSSSDG KNDKTKSVPS RDPERLQKIK ESLLLEDSEE BACU010069/1-358 TDNVMITVDI IPSGWSSSDG KNDKTKSVPS RDPERLQKIK ESLLLEDSEE ENSTTRP00000000018/1-692 TDNVMITVDI IPSGWSSSDG KNDKTKSVPS RDPERLQKIK ESLLLEDSEE 551 600 ENSP00000259050/1-704 EEGDLCRICQ MAAASSSNLL IEPCKCTGSL QYVHQDCMKK WLQAKINSGS ENSBTAP00000011533/1-701 EEGDLCRICQ MAAASSSNLL IEPCKCTGSL QYVHQECMKK WLQAKINSGS bmy_05593T0/1-647 EEGDLCRICQ MAAASSSNLL IEPCKCTGSL QYVHQECMKK WLQAKINSGS BACU010069/1-358 EEGDLCRICQ MAAASSSNLL IEPCKCTGSL QYVHQECMKK WLQAKINSGS ENSTTRP00000000018/1-692 EEGDLCRICQ MAAASSSNLL IEPCKCTGSL QYVHQECMKK WLQAKINSGS 601 650 ENSP00000259050/1-704 SLEAVTTCEL CKEKLELNLE DFDIHELHRA HANEQAEYEF ISSGLYLVVL ENSBTAP00000011533/1-701 SLEAVTTCEL CKEKLQLNLE DFDIHELHRA RANEQAEYEF ISSGLYLVVL bmy_05593T0/1-647 SLEAVTTCEL CKEKLQLNLE DFDIHELHRA HANEQAEYEF ISSGLYLVVL BACU010069/1-358 SLEAVTTCEL CKEKLQLNLE DFDIHELHRA HANEQVS--- ----IF---- ENSTTRP00000000018/1-692 SLEAVTTCEL CKEKLQLNLE DFDIHELHRA HANEQVE--- ISIRFVLLVL 651 700 ENSP00000259050/1-704 LHLCEQSFSD MMGNTNEPST RVRFINLART LQAHMEDLET SEDDSEEDGD ENSBTAP00000011533/1-701 LHLCEQSFSD MMGNTNEPST RVRFINLART LQAHMEDLET SEDDSEEDGD bmy_05593T0/1-647 LHLCEQSFSD MMGNTNEPST RVRFINLART LQAHMEDLET SEDDSEEDGD BACU010069/1-358 ---C------ ---------- ---LIYLGKC LFCA------ ---------- ENSTTRP00000000018/1-692 LPLCEQGF-- -MMNTDSTV- ---FINLART LQAHMEDLET SEDDSEEDGD 701 750 ENSP00000259050/1-704 HNRTFDIA ENSBTAP00000011533/1-701 HNRTFDIA bmy_05593T0/1-647 HNRTFDIA BACU010069/1-358 -------- ENSTTRP00000000018/1-692 HNRTFDIA