KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 16:43:03 2014  Check: 00 ..

 Name: ENSP00000246041/1-200     Len:    235  Check:  9980  Weight:  1.00
 Name: ENSBTAP00000011104/1-200  Len:    235  Check:  8429  Weight:  1.00
 Name: bmy_07686T0/1-230         Len:    235  Check:  1392  Weight:  1.00
 Name: BACU016895/1-199          Len:    235  Check:  7529  Weight:  1.00

//


                          1                                                   50
ENSP00000246041/1-200     ---------- ---------- ---------- ----MVHAFL IHTLRAPNTE 
ENSBTAP00000011104/1-200  ---------- ---------- ---------- ----MVHAFL IHTLRAAKAE 
bmy_07686T0/1-230         CYWRAQPPYL PFSRVKGPIS RSPWARKKSI HPRAMVHVFL IHTLRATKAE 
BACU016895/1-199          ---------- ---------- ---------- ----MVHVFL IHTLRATKAE 


                          51                                                 100
ENSP00000246041/1-200     DTGLCRVLYS CVFGAEKSPD DPRPHGAERD RLLRKEQILA VARQVESMCR 
ENSBTAP00000011104/1-200  E-GLCRVLYS CFFGAENSPN DSQPHSAERD RLLRKEQILA VARQVESMYQ 
bmy_07686T0/1-230         E-GLCRVLYS CFFGTENSPN DPQPHGAERD RLLRKEQILA VARP--SLNQ 
BACU016895/1-199          E-GLCRVLYS CFFGTENSPN DPQPHGAERD RLLRKEQILA VARQVESMCQ 


                          101                                                150
ENSP00000246041/1-200     LQQQASGRPP MDLQPQSSDE QVPLHEAPRG AFRLAAENPF QEPRTVVWLG 
ENSBTAP00000011104/1-200  LQQQACGRHA VDLQPQSSDD PVALHEAPCG AFRLAPGDPF QEPRTVVWLG 
bmy_07686T0/1-230         -QQQACGRPA VDLQPQSSDD PVRLHESPCG AFRLTAGDPF QEPRTVVWLG 
BACU016895/1-199          LQQQACGRPA VDLQPQSSDD PVRLHESPCG AFRLTAGDPF QEPRTVVWLG 


                          151                                                200
ENSP00000246041/1-200     VLSLGFALVL DAHENLLLAE GTLRLLTRLL LDHLRLLAP- STSLLLRADR 
ENSBTAP00000011104/1-200  VLSIGFALVL DTHENLLLVE STLRLLARLL LDHLRLLVPG GANLLLRADC 
bmy_07686T0/1-230         VLSLGFALVL NAHENLLLAE GTLRLLARLL LEHLRLLVP- TANLLLRADC 
BACU016895/1-199          VLSLGFALVL NAHENLLLAE GTLRLLARLL LEHLRLLVP- TANLLLRADC 


                          201                                                250
ENSP00000246041/1-200     IEGILTRFLP HGQLLFLNDQ FVQGLEKEFS AAWPR 
ENSBTAP00000011104/1-200  IEGILTRFLP HGQLLFLNDQ FVQGLEKEFS AAWSH 
bmy_07686T0/1-230         IEGILARFLP HGQLLFLNDQ FVQGLEKEFS AAWPR 
BACU016895/1-199          IEGILARFLP HGQLLFLNDQ FVQGLEKEFS AAWTR