KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:42:57 2014 Check: 00 .. Name: ENSTTRP00000001366/1-851 Len: 929 Check: 1326 Weight: 1.00 Name: ENSBTAP00000011083/1-859 Len: 929 Check: 2770 Weight: 1.00 Name: bmy_00152T0/1-640 Len: 929 Check: 8943 Weight: 1.00 Name: BACU010473/1-675 Len: 929 Check: 8028 Weight: 1.00 // 1 50 ENSTTRP00000001366/1-851 MEPLSHRGLP RLSWIDTLYS NFSYGADDYD GEGNEEQKGP PEGSETMPYI ENSBTAP00000011083/1-859 MEPLSHRGLP RLSWIDTLYS NFSYGADDYD AEGNEEQKGP PEGSETMPYI bmy_00152T0/1-640 PVSLPGAGGH GCRCRCRCCW DPASCLPSAA PAAMEEEE-- ----EAIGFL BACU010473/1-675 ---------- ---------- ---------- ---MEEEE-- ----EAIGFL 51 100 ENSTTRP00000001366/1-851 DESPTMSPQL SARNQGGGDS ISP--TPPEG LAPGVEAGKG LEMRKLVLSG ENSBTAP00000011083/1-859 DESPTMSPQL SARSQGGGDS ISP--TPPEG LAPGVEAGKG LEMRKLVLSG bmy_00152T0/1-640 DKVLEDEDVF LLEECELGTP TSPGSGSPFL VAVKVEAGKG LEMRKLVLSG BACU010473/1-675 DKVLEDEDVF LLEECELGTP TSPGSGSPFL VAVKVEAGKG LEMRKLVLSG 101 150 ENSTTRP00000001366/1-851 FLASEEIYIN QLEALLLPMK PLKATATTSQ PVLTIQQIET IFYKIQDIYE ENSBTAP00000011083/1-859 FLASEEIYIN QLEALLLPMK PLKATATTSQ PVLTIQQIET IFYKIQDIYE bmy_00152T0/1-640 FLASEEIYIN QLEALLLPMK PLKATATTSQ PVLTIQQIET IFYKIQDIYE BACU010473/1-675 FLASEEIYIN QLEALLLPMK PLKATATTSQ PVLTIQQIET IFYKIQDIYE 151 200 ENSTTRP00000001366/1-851 IHKEFYDNLC PKVQQWDSQV TMGHLFQKLA SQLGVYKAFV DNYKVALETA ENSBTAP00000011083/1-859 IHKEFYDNLC PKVQQWDSQV TMGHLFQKLA SQLGVYKAFV DNYKVALETA bmy_00152T0/1-640 IHKEFYDNLC PKVQQWDSQV TMGHLFQKLA SQLGVYKAFV DNYKVALETA BACU010473/1-675 IHKEFYDNLC PKVQQWDSQV TMGHLFQKLA SQLGVYKAFV DNYKVALETA 201 250 ENSTTRP00000001366/1-851 EKCSQSNNQF QKISEELKVK GPKDSKDSHT SVTMEALLYK PIDRVTRSTL ENSBTAP00000011083/1-859 EKCSQSNNQF QKISEELKVK GPKDSRDSHT SVTMEALLYK PIDRVTRSTL bmy_00152T0/1-640 EKCSQSNNQF QKISEELKVK GPKDSKDSHT SVTMEALLYK PIDRVTRSTL BACU010473/1-675 EKCSQSNNQF QKISEELKVK GPKDSKDSHT SVTMEALLYK PIDRVTRSTL 251 300 ENSTTRP00000001366/1-851 VLH--DLLKH TPVDHPDYPL LQDALRISQN FLSSINEDID PRRTAVTTPK ENSBTAP00000011083/1-859 VLH--DLLKH TPVDHPDYPL LQDALRISQN FLSSINEDID PRRTAVTTPK bmy_00152T0/1-640 VLHVSDLLKH TPVDHPDYPL LQDALRISQN FLSSINEDID PRRTAVTTPK BACU010473/1-675 VLH--DLLKH TPVDHPDYPL LQDALRISQN FLSSINEDID PRRTAVTTPK 301 350 ENSTTRP00000001366/1-851 GETRQLVKDG FLVEVSEGSR KLRHVFLFTD VLLCAKLKKT SAGKHQQYDC ENSBTAP00000011083/1-859 GETRQLVKDG FLVEVSEGSR KLRHVFLFTD VLLCAKLKKT SAGKHQQYDC bmy_00152T0/1-640 GETRQLVKDG FLVEVSEGSR KLRHVFLFTD VLLCAKLKKT SAGKHQQYDC BACU010473/1-675 GETRQLVKDG FLVEVSEGSR KLRHVFLFTD VLLCAKLKKT SAGKHQQYDC 351 400 ENSTTRP00000001366/1-851 KWYIPLADLV FPSPEESEAS PQVHPFPDHE LEDMKMKISA LKSEIQKEKA ENSBTAP00000011083/1-859 KWYIPLADLV FPSPEESEAS PQVHPFPDHE LEDMKMKISA LKSEIQKEKA bmy_00152T0/1-640 KWYIPLADLV FPSPEESEAS PQVHPFPDHE LEDMKMKISA LKSEIQKEKA BACU010473/1-675 KWYIPLADLV FPSPEESEAS PQVHPFPDHE LEDMKMKISA LKSEIQKEKA 401 450 ENSTTRP00000001366/1-851 NKGQSRAIER LKKKMFENEF LLLLNSPTIP FRIHNRNGKS YLFLLSSDYE ENSBTAP00000011083/1-859 NKGQSRAIER LKKKMFENEF LLLLNSPTIP FRIHNRNGKS YLFLLSSDYE bmy_00152T0/1-640 NKGQSRAIER LKKKMFENEF LLLLNSPTIP FRIHNRNGKS YLFLLSSDYE BACU010473/1-675 NKGQSRAIER LKKKMFENEF LLLLNSPTIP FRIHNRNGKS YLFLLSSDYE 451 500 ENSTTRP00000001366/1-851 RSEWREAIQK ---------- -LQKKDLQAF VLSSVELQVL TGSCFKLRTV ENSBTAP00000011083/1-859 RSEWREAIQK ---------- -LQKKDLQAF VLSSVELQVL TGSCFKLRTV bmy_00152T0/1-640 SSPQGRAVGP SGPVVTVPSL LPPPTDLQAF VLSSVELQVL TGSCFKLRTV BACU010473/1-675 RSEWREAIQK ---------- -LQKKDLQAF VLSSVELQVL TGSCFKLRTV 501 550 ENSTTRP00000001366/1-851 HNIPVTSNKD DDESPGLYGF LHVIVHSAKG FKQSA----- ---------- ENSBTAP00000011083/1-859 HNIPVTSNKD DDESPGLYGF LHVIVHSAKG FKQSA----- ---------- bmy_00152T0/1-640 HNIPVTSNKD DDESPGLYGF LHVIVHSAKG FKQSA----- ---------- BACU010473/1-675 HNIPVTSNKD DDESPGLYGF LHVIVHSAKG FKQSASWGPA SSFEMWSIPP 551 600 ENSTTRP00000001366/1-851 ---------- ---------- ---------- ---------- NLYCTLEVDS ENSBTAP00000011083/1-859 ---------- ---------- ---------- ---------- NLYCTLEVDS bmy_00152T0/1-640 ---------- ---------- ---------- ---------- NLYCTLEVDS BACU010473/1-675 KARNQLLLAG DHPCPLSPRC WRNANVASEW IVLDTFKAFS DLYCTLEVDS 601 650 ENSTTRP00000001366/1-851 FGYFVSKAKT RVFRDTTEPK WDEEFEIELE GSQSLRILCY EKCYDKTKVN ENSBTAP00000011083/1-859 FGYFVSKAKT RVFRDTTEPK WDEEFEIELE GSQSLRILCY EKCYDKTKVN bmy_00152T0/1-640 FGYFVSKAKT RVFRDTTEPK WDEEFEIELE GSQSLRILCY EKCYDKTKVN BACU010473/1-675 FGYFVSKAKT RVFRDTTEPK WDEEFEIELE GSQSLRILCY EKCYDKTKVN 651 700 ENSTTRP00000001366/1-851 KDNNEIVDKI MGKGQIQLDP QTVETKNWHT DVIEMNGIKV EFSMKFTSRD ENSBTAP00000011083/1-859 KDNNEIVDKI MGKGQIQLDP QTVETKNWHT DVIEMNGIKV EFSMKFTSRD bmy_00152T0/1-640 KDNNEIVDKI MGKGQIQVRG RH-------- --------SQ GTKARL--GE BACU010473/1-675 KDNNEIVDKI MGKGQIQRTS HT-------- --------SV VVSARAFGGD 701 750 ENSTTRP00000001366/1-851 MSLKRTPSKK QTGVFGVKIS VVTXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000011083/1-859 MSLKRTPSKK QSGVFGVKIS VVTKRERSKV PYIVRQCVEE VEKRGIEEVG bmy_00152T0/1-640 LS-------- GGHTD----- ---------- ---------- ---------- BACU010473/1-675 LSLASCSSVT SGESF----- ---------- ---------- ---------- 751 800 ENSTTRP00000001366/1-851 XXXXXXXXXX XXXXXXXXXX XNKDILLMLS DMDINAIAGT LKLYFRELPE ENSBTAP00000011083/1-859 IYRISGVATD IQALKAVFDA NNKDILLMLS DMDINAIAGT LKLYFRELPE bmy_00152T0/1-640 ---------- ---------- ---------- ---------- ---------- BACU010473/1-675 ---------- ---------- ---------- ---------- ---------- 801 850 ENSTTRP00000001366/1-851 PLLTDRLYPA FMEGIALSDP AAKENCMMHL LRSLPDPNLI TFLFLLEHLK ENSBTAP00000011083/1-859 PLLTDRLYPA FMEGIALSDP AAKENCMMHL LRSLPDPNLI TFLFLLEHLK bmy_00152T0/1-640 ---------- --HSQALSPE SGRF------ ---------- ---------- BACU010473/1-675 ---------- --ISLSPSPH NSKQYHQRHR SREASTPADI ---------- 851 900 ENSTTRP00000001366/1-851 RVAEKEPVNK MSLHNLATVF GPTLLRPSEV ESKAHLTSAA DI-------- ENSBTAP00000011083/1-859 RVAEKEPVNK MSLHNLATVF GPTLLRPSEV ESKAHLTSAA DIWSHDVMAQ bmy_00152T0/1-640 ---------- ---------- ---------- ---------- ---------- BACU010473/1-675 ---------- ---------- ---------- ---------- ---------- 901 950 ENSTTRP00000001366/1-851 VQVLLYYLQH PPISFAELKR NTLYFSTDV ENSBTAP00000011083/1-859 VQVLLYYLQH PPISFAELKR NTLYFSTDV bmy_00152T0/1-640 ---------- ---------- --------- BACU010473/1-675 ---------- ---------- ---------