KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:42:41 2014 Check: 00 .. Name: ENSTTRP00000008269/1-501 Len: 735 Check: 89 Weight: 1.00 Name: bmy_03284T0/1-600 Len: 735 Check: 803 Weight: 1.00 Name: ENSP00000434279/1-567 Len: 735 Check: 1801 Weight: 1.00 Name: ENSBTAP00000010989/1-527 Len: 735 Check: 6058 Weight: 1.00 Name: BACU017309/1-198 Len: 735 Check: 1394 Weight: 1.00 // 1 50 ENSTTRP00000008269/1-501 ---------- ---------- ---------- ---------- ---------- bmy_03284T0/1-600 ---------- ---------- ---------- ---------- ---------- ENSP00000434279/1-567 MERDSHGNAS PARTPSAGAS PAQASPAGTP PGRASPAQAS PAQASPAGTP ENSBTAP00000010989/1-527 ---------- ----PSPPHS PADCTPS--- --------AG TLSTGPSSLS BACU017309/1-198 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000008269/1-501 MERDSHLNAA PARTPPARAP LACACPARVS P--------- ------SRSS bmy_03284T0/1-600 ---------- ---------- ---------- ---------- ---------- ENSP00000434279/1-567 PGRASPAQAS PAGTPPGRAS PGRASPAQAS PAQASPARAS PALASLSRSS ENSBTAP00000010989/1-527 SCCSPVPNAS PAGTPPPRAF PGRAPAARAS P--------- ------SRSS BACU017309/1-198 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000008269/1-501 PGGSSSAMSA SMTSSPARVH LVRATPVRAV PVEASPARST PAARATRENP bmy_03284T0/1-600 ---------- ---------- ---------- ----MSTSAA RATRATRESP ENSP00000434279/1-567 SGRSSSARSA SVTTSPTRVY LVRATPVGAV PIRSSPARSA PATRATRESP ENSBTAP00000010989/1-527 SGRSSSTMSP LTTSSPTRVY LVRATPVGTV PVHASPAGPT PAARAARESP BACU017309/1-198 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000008269/1-501 GIHLPKFTRK EVLKQLLLIG CIFFLIALVV SLI------- ---------- bmy_03284T0/1-600 GINLPKFTRQ EGLKHMLLIG CIFLFIALVV SLISRGSNLR VHFKNTRETA ENSP00000434279/1-567 GTSLPKFTWR EGQKQLPLIG CVLLLIALVV SLI------- ---------- ENSBTAP00000010989/1-527 GITLPKFTWQ EGQKRLLLIG CVLLLIALVV SLI------- ---------- BACU017309/1-198 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000008269/1-501 ---------- ---------- ----VLFYFW QGHVG----- -----IKYKE bmy_03284T0/1-600 QAIKGMHIRK ATKYLKDGTL KRQRVPFRRY NGGVGRCAQA KQWGWTQGRW ENSP00000434279/1-567 ---------- ---------- ----ILFQFW QGHTG----- -----IRYKE ENSBTAP00000010989/1-527 ---------- ---------- ----ILFYFW RGHTG----- -----VNYKE BACU017309/1-198 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000008269/1-501 PVESCP---- ---------- ---------- ---------- ---KRAVRCD bmy_03284T0/1-600 PRRSAEFLLH MLKNAESNAD LKGLDVDSLV IEHIQVNKAP KMRRRTYRAR ENSP00000434279/1-567 QRESCP---- ---------- ---------- ---------- ---KHAVRCD ENSBTAP00000010989/1-527 PRESCP---- ---------- ---------- ---------- ---SHAVRCD BACU017309/1-198 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000008269/1-501 GVVDCKL--- ---------- -----KSDEL GCVRFDWDKS LLKFYSGSSH bmy_03284T0/1-600 GWINPYMSSP CHVEMILAEK EQIVPKPEEE GSMRFDWDTS LLKVYSGSSH ENSP00000434279/1-567 GVVDCKL--- ---------- -----KSDEL GCVRFDWDKS LLKIYSGSSH ENSBTAP00000010989/1-527 GVEDCKL--- ---------- -----KSDEL GCVRFDWDKS LLKVYSGSSH BACU017309/1-198 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000008269/1-501 KWLPICSDSW NDLYSNKTCQ QLGFKSAFWT ANVTNRNFDS SFSISKYSST bmy_03284T0/1-600 KWLPICSDSW NDFYSKKICQ QLGFKSAYRT AKVTNRNFES SFSISKYSST ENSP00000434279/1-567 QWLPICSSNW NDSYSEKTCQ QLGFESAHRT TEVAHRDFAN SFSILRYNST ENSBTAP00000010989/1-527 QWLPVCSDSW NDSYSQKTCQ QLGFESAYWT TKVDNRNVDS SFSVSEFNST BACU017309/1-198 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000008269/1-501 FQESIYXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_03284T0/1-600 FQESIYRSEC PSQQYVALQC SHCGLRAMTG RIVGGALAPE SRWPWQVSLQ ENSP00000434279/1-567 IQESLHRSEC PSQRYISLQC SHCGLRAMTG RIVGGALASD SKWPWQVSLH ENSBTAP00000010989/1-527 IQQSTYRSDC PSQQYVALQC SHCGLRAMTG RIVGGARAPE SKWPWQVSLQ BACU017309/1-198 ---------- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000008269/1-501 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXNLHQLPEG bmy_03284T0/1-600 YAHTHICGGT LIDAQWVLTA AHCFFITPEK MLEGWKVYAG TNNLHQLPEG ENSP00000434279/1-567 FGTTHICGGT LIDAQWVLTA AHCFFVTREK VLEGWKVYAG TSNLHQLPEA ENSBTAP00000010989/1-527 FSRTHICGGT LIDAQWILTA AHCFFITREK ILEGWKVYVG TNDLHHLPES BACU017309/1-198 ---------- ---------- -----INPEK ILEGWKVYAG TNNLHQLPEG 501 550 ENSTTRP00000008269/1-501 ASIAQIIINS NYSDDEDDYD IALMRLSEPL TLTTHVQ--- ---------- bmy_03284T0/1-600 ASIAQIIINS NYTDSKDDYD IALMRLSEPL TLTGEVYVPI HPGWPTMGMV ENSP00000434279/1-567 ASIAEIIINS NYTDEEDDYD IALMRLSKPL TLSAHIH--- ---------- ENSBTAP00000010989/1-527 ASVAQIIINS NYSDDQDDYD IALMRLSKPL TLSAHVH--- ---------- BACU017309/1-198 ASIAQIIINS NYTDNKDDYD IALMRLSKPL TLTAHVH--- ---------- 551 600 ENSTTRP00000008269/1-501 ---PACLPMH GQTFSLN--- ---ETCWVTG FGKTKETDER TSPFLREVQV bmy_03284T0/1-600 PSTPGRLPVW GAGWAAGRPQ SRPESHSLPV FSLLPCTEEV TSPFLREVQV ENSP00000434279/1-567 ---PACLPMH GQTFSLN--- ---ETCWITG FGKTRETDDK TSPFLREVQV ENSBTAP00000010989/1-527 ---PACLPMH GQTFGLN--- ---EICWITG FGKTKETDER TSPFLREVQV BACU017309/1-198 ---PACLPMH GQTFSLN--- ---ETCWVTG FGKTKETDER TSPFLREVQV 601 650 ENSTTRP00000008269/1-501 NLIDFKXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_03284T0/1-600 NLIDYKKCNN QLVYNNHLTP RMMCAGDLQG GRDSCQGDSG GPLVCEQSHH ENSP00000434279/1-567 NLIDFKKCND YLVYDSYLTP RMMCAGDLRG GRDSCQGDSG GPLVCEQNNR ENSBTAP00000010989/1-527 NLIDFKKCND YLVYDSYLTP RMMCAGDLRG GRDSCQGDSG GPLVCEQNGR BACU017309/1-198 NLIDYKKCNN ELVYNSYLTP RMMCAGDLQG GRDSCQGDSG GPLVCEQNHH 651 700 ENSTTRP00000008269/1-501 XXXXXXXXXX IGCGQRNKPG VYTKVTEVLH WIYSKMESET ---------- bmy_03284T0/1-600 WYLAGVTSWG VGCGQRNKPG VYTKVTEVLH WIYSKMEVRA LQGVCTQQXG ENSP00000434279/1-567 WYLAGVTSWG TGCGQRNKPG VYTKVTEVLP WIYSKMESEV ---------- ENSBTAP00000010989/1-527 WYLAGVTSWG TGCGQRNKPG VYTKVTEVLP WIYSKMEREM ---------- BACU017309/1-198 WYLAGVTSWG VGCGQRNKPG VYTKVTEVLH WIYSKMESET ---------- 701 750 ENSTTRP00000008269/1-501 ---------- ---------- ---------- RFKA- bmy_03284T0/1-600 TPKGGVPGRG PSLSPGSRRG PLAPSPFGVF RMWK- ENSP00000434279/1-567 ---------- ---------- ---------- RFRKS ENSBTAP00000010989/1-527 ---------- ---------- ---------- RFRKS BACU017309/1-198 ---------- ---------- ---------- RFQKA