KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:40:58 2014 Check: 00 .. Name: bmy_04659T0/1-437 Len: 551 Check: 5383 Weight: 1.00 Name: BACU008056/1-329 Len: 551 Check: 2040 Weight: 1.00 Name: ENSP00000293745/1-511 Len: 551 Check: 9012 Weight: 1.00 Name: ENSBTAP00000010391/1-524 Len: 551 Check: 9980 Weight: 1.00 // 1 50 bmy_04659T0/1-437 -----SAWP- ---------- -SAAIISGRV SSSSVSFRA- GVKGEAAFGS BACU008056/1-329 MSRQLHLYPG RERLAFSGRH FGPGQQQLRL VSGRRQGRG- RLRQQGPLQP ENSP00000293745/1-511 MSRQLTHFPR GERLGFSG-- -CSAVLSGGI GSSSASFRA- RVKGSASFGS ENSBTAP00000010391/1-524 MSRQLNLYPG GERLAFSG-- -CSAIISSRV SSSTASFRAS GIKGTATFGS 51 100 bmy_04659T0/1-437 RGLFNPGGGR RLALGTAVGR ---------- ---------- APMMTSDFWG BACU008056/1-329 RGRPAPGPGH RGRAGSVLGP -------CSV TCGGRLGGFV GTVFGSARLG ENSP00000293745/1-511 KSLSCLGGSR SLALSAAARR ---------- -GGGRLGGFV GTAFGSAGLG ENSBTAP00000010391/1-524 RSLFNCGGGR RPALSSAAGR GGSALGSCAA TGGGRRGGFV GTVFGSAGLG 101 150 bmy_04659T0/1-437 PV-------- ---------- ---------- PTLER----- QEHCGGGFGA BACU008056/1-329 PTCPSVCPPG GIPQVTVNKS LLAPLNMELD PEIQKVRVQE REQIKVL-NK ENSP00000293745/1-511 PKCPSVCPPG GIPQVTVNKS LLAPLNVEMD PEIQRVRAQE REQIKALNNK ENSBTAP00000010391/1-524 PACPSVCPPG GIPQVTVNKS LLSPLNVELD PEIQKVRAQE REQIKALNNK 151 200 bmy_04659T0/1-437 MTTFGFQVRF LGQQTQVLGT KWELLQQLDP NNCRNSLEPI LEGCTSNLRK BACU008056/1-329 FTSFIDKVRI LEQQNQVLGT KWELLQQLDP NNCRNNLEPI LEGCTSNLRK ENSP00000293745/1-511 FASFIDKVRF LEQQNQVLET KWNLLQQLDL NNCRKNLEPI YEGYISNLQK ENSBTAP00000010391/1-524 FASFIDKVRF LEQQNQVLGT KWELLQQLDL NNCKNNLEPI LEGYTSNLRK 201 250 bmy_04659T0/1-437 QLETLSGDRG RLDLGLRNMQ ALVEDYKKRY EVEINRXPAA ENEFVVLKKG BACU008056/1-329 QLETLSGDRV SLDLGLRNMQ ALVEDYKKRY EVEINRRPAA ENEFVVLKKY ENSP00000293745/1-511 QLEMLSGDGV RLDSELRNMQ DLVEDYKKRY EVEINRRTAA ENEFVVLKKD ENSBTAP00000010391/1-524 QLEMLSGDRV RLDSELRSMR DVVEEYKKRY EVEINRRTAA ENEFVMLKKD 251 300 bmy_04659T0/1-437 VNAACMNKVE LQAKVDSLTD DIKFFKCLYE GEIPQVQSHI SDMSIILSID BACU008056/1-329 ANAACMNKFE LQAKVDSLTD DIKSFKCLYE GEIPQVQSHI SDVSVILSID ENSP00000293745/1-511 VDAAYMNKVE LQAKVDSLTD EIKFFKCLYE GEITQIQSHI SDTSIVLSMD ENSBTAP00000010391/1-524 VDAAYMNKVE LQAKVDSLTD EIKFLKCLYE GEIAQLQSHI SDTSVILSMD 301 350 bmy_04659T0/1-437 SNRDLDLDSI ITQVRAQDEL IALESKGEAE ALAEFSTVLC SSSLVPQPQI BACU008056/1-329 SNRDLDLDSI ITQVRAQDEL IALESKGEAE ALY------- ------QTKL ENSP00000293745/1-511 NNRDLDLDSI IAEVRAQYEE IALKSKAEAE TLY------- ------QTKI ENSBTAP00000010391/1-524 NNRDLDLDSI IAQVRAQYEE IALKSKAEAE ALY------- ------QTKI 351 400 bmy_04659T0/1-437 QELQVTAGQH GDDLKLTKAE XSDLNRWIQR IXLEIGNVKK QVALNPFAPR BACU008056/1-329 S--------- ---------- ---------- ---------- ---------- ENSP00000293745/1-511 QELQVTAGQH GDDLKLTKAE ISELNRLIQR IRSEIGNVKK Q--------- ENSBTAP00000010391/1-524 QELQATAGQH GDDLKLTKAE ISDLNRMIQR IRSEIGNVKK Q--------- 401 450 bmy_04659T0/1-437 CSNLEMAIAN TEQWGDCALK DTQAKLDELE AALLQSKQEV ARMLREYQEL BACU008056/1-329 ---------- ---------- ---------- ---------- ---------- ENSP00000293745/1-511 CADLETAIAD AEQRGDCALK DARAKLDELE GALHQAKEEL ARMLREYQEL ENSBTAP00000010391/1-524 CSNLEMAIAD AEQRGDCALK DARAKLDELD AALLQAKEEL ARMMREYQEL 451 500 bmy_04659T0/1-437 ALDEHKAGPG RGDCHLLQAA GGRGVQVRGG YLLSGALSLC FSRKVEGKQF BACU008056/1-329 ---------- ---------- ---------- ---------- ---------- ENSP00000293745/1-511 V--SLKLALD MEIATYRKLL ESEECRMSGE YPNSVSISVI SSTNAGAGGA ENSBTAP00000010391/1-524 M--STKLALD MEIATYRKLL EGEECRMSGE YPNSVSISVI SNTSTGAGGT 501 550 bmy_04659T0/1-437 GFVQALLR-- ---------- ---------- ---------- ---------- BACU008056/1-329 ---------- ---------- ---------- ---------- ---------- ENSP00000293745/1-511 GFSMGFGASS SYSYKTAAAD VKTKGSC-GS ELKDPLAKTS GSSCATKKAS ENSBTAP00000010391/1-524 GFSMGFGALS SYSYKSSAVD VKTKGSCGGS ELKDAPAKTS GSSCATKKAS 551 600 bmy_04659T0/1-437 - BACU008056/1-329 - ENSP00000293745/1-511 R ENSBTAP00000010391/1-524 R