KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:39:56 2014 Check: 00 .. Name: BACU012402/1-629 Len: 630 Check: 4482 Weight: 1.00 Name: ENSTTRP00000011278/1-538 Len: 630 Check: 4129 Weight: 1.00 Name: ENSP00000326411/1-538 Len: 630 Check: 7995 Weight: 1.00 Name: bmy_14127T0/1-524 Len: 630 Check: 8705 Weight: 1.00 Name: ENSBTAP00000009988/1-539 Len: 630 Check: 1641 Weight: 1.00 // 1 50 BACU012402/1-629 MAAAAEGVPE SYREEPVRDD AAVETAEEAK EPAEADISEL CRDMFSKMAT ENSTTRP00000011278/1-538 ---------- -MAEKPLRLX X--------- ---------- XXXXXXX--- ENSP00000326411/1-538 ---------- -MAQKPLRLL A--------- ---------- CGDVEGK--- bmy_14127T0/1-524 ---------- -MAQKPLRLL A--------- ---------- CGDVEGK--- ENSBTAP00000009988/1-539 ---------- -MAQKPLRLL A--------- ---------- CGDVEGK--- 51 100 BACU012402/1-629 YLTGELTATS EDYKLLENMN KLTSLKYLEM KDIAVNISRN LKDLNQKYAG ENSTTRP00000011278/1-538 ---------- ---------- ---------- ---------- ---------- ENSP00000326411/1-538 ---------- ---------- ---------- ---------- ---------- bmy_14127T0/1-524 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009988/1-539 ---------- ---------- ---------- ---------- ---------- 101 150 BACU012402/1-629 LQPYLDQINV IEEQVAALEQ AAYKLDAYSK KLGNFFGSTP DAEWEEYKTG ENSTTRP00000011278/1-538 XXXXXXXXXX IQKKSGNFDL LLC------- -VGNFFGSTP DAEWEEYKTG ENSP00000326411/1-538 FDILFNRVQA IQKKSGNFDL LLC------- -VGNFFGSTQ DAEWEEYKTG bmy_14127T0/1-524 FDVLFNRVRA IQKKSGNFDL LLC------- -VGNFFGSTP DAEWEEYKTG ENSBTAP00000009988/1-539 FDALFNRVRA IQKKSGNFDL LLC------- -VGNFFGSTP DAEWEEYKTG 151 200 BACU012402/1-629 IKKAPIQTYV LGANNQETVK YFQDVDGCEL AENITYLGRK GVFTGSSGLQ ENSTTRP00000011278/1-538 IKKAPIQTYV LGANNQETVK YFQDVDGCEL AENITYLGRK GVFTGSSGLQ ENSP00000326411/1-538 IKKAPIQTYV LGANNQETVK YFQDADGCEL AENITYLGRK GIFTGSSGLQ bmy_14127T0/1-524 IKKAPIQTYV LGANNQETVK YFQDVDGCEL AENITYLGRK GVFTGSSGLQ ENSBTAP00000009988/1-539 VKKAPIQTYV LGANNQETVK YFQDVDGCEL AENITYLGRK GVFTGSSGLQ 201 250 BACU012402/1-629 IVYLSGTESL NEPVPGYSFS PKDVFSLRTM LWSTSQFKGV DILLTSPWPK ENSTTRP00000011278/1-538 IVYLSGTESL NEPVPGYSFS PKDVISLRTT LWSTSQFKGV DILLTSPWPK ENSP00000326411/1-538 IVYLSGTESL NEPVPGYSFS PKDVSSLRMM LCTTSQFKGV DILLTSPWPK bmy_14127T0/1-524 IVYLSGTESL NEPVPGYSFS PKDVFSLRTM LWSTSQFKGV DILLTSPWPK ENSBTAP00000009988/1-539 IVYLSGTESL NEPVPGYSFS PKDVSSLRTM LCSTPQFKGV DILLTSPWPK 251 300 BACU012402/1-629 YVGNFGNSSG EVDTKKCGSA LISSLATGLK PRYHFAALEK TYYERLPYRN ENSTTRP00000011278/1-538 YVGNFGNSSG EVDTKKCGSD LISSLATGLK PRYHFAALEK TYYERLPYRN ENSP00000326411/1-538 CVGNFGNSSG EVDTKKCGSA LVSSLATGLK PRYHFAALEK TYYERLPYRN bmy_14127T0/1-524 YVGNFGNSSG EVDTKKCGSA LISSLATGLK PRYHFAALEK TYYERLPY-- ENSBTAP00000009988/1-539 YVGNFGNSSG EVDTKKCGSA LISSLATGLK PRYHFASLEK TYYERLPYRN 301 350 BACU012402/1-629 HIILQENAQH ATRFIALANV GNPEKKKYLY AFSIVPMKLM NVAELVKQPP ENSTTRP00000011278/1-538 HIILQENAQH ATRFIALANV GNPEKKKYLY AFSIVPMKLM DVAELVKQPP ENSP00000326411/1-538 HIILQENAQH ATRFIALANV GNPEKKKYLY AFSIVPMKLM DAAELVKQPP bmy_14127T0/1-524 ---------- --RFIALANV GNPEKKKYLY AFSIVPMKLM DVAELVKQPP ENSBTAP00000009988/1-539 HIVLQENAQH ATRFIALANV GNPEKKKYLY AFSIVPMKLM DAAELVKQPP 351 400 BACU012402/1-629 DVTENPYRKS VKEASLGKQI PAPEEDSACQ FFFDLNEKQG RKRSSTGRDS ENSTTRP00000011278/1-538 DVTENPYRKF VKQASIGKQI PAPEEDSACQ FFFDLNEKQG RKRSSTGRDS ENSP00000326411/1-538 DVTENPYRKS GQEASIGKQI LAPVEESACQ FFFDLNEKQG RKRSSTGRDS bmy_14127T0/1-524 DVTENPYRKS VKEASIGKQI PAPEEDSACQ FFFDLNEKQG RKRSSTGRDN ENSBTAP00000009988/1-539 DVTENPYRKS GKEASTGKQT PAPEEESACQ FFFDLNEKQG RKRSSTGRDS 401 450 BACU012402/1-629 KPSPHPKQPR KLPQPPGPCW FCLASPEVEK HLVVNIGTHC YLALAKGGLS ENSTTRP00000011278/1-538 KSSPHPKQPR KLPQPPGPCW FCLASPEVEK HLVVSIGTHC YLALAKGGLS ENSP00000326411/1-538 KSSPHPKQPR KPPQPPGPCW FCLASPEVEK HLVVNIGTHC YLALAKGGLS bmy_14127T0/1-524 KSSPHPKYPR KLPQPPGPCW FCLASPEVEK HLVVNIGTHC YLALAKGGLS ENSBTAP00000009988/1-539 KSSPHPKQPR KPPQPPGPCW FCLASPEVEK HLVVNIGTHC YLALAKGGLS 451 500 BACU012402/1-629 DDHVLILPIG HYQSVVELSA EVVEEVEQYK ATLRRFFKSQ GKRCVLFERN ENSTTRP00000011278/1-538 DDHVLILPIG HYQSVVELSA EVVEEVEQYK ATLRRFFKSQ GKRCILFERN ENSP00000326411/1-538 DDHVLILPIG HYQSVVELSA EVVEEVEKYK ATLRRFFKSR GKWCVVFERN bmy_14127T0/1-524 DDHVLILPIG HYQSVVELSA EVVEEVEQYK ATLRRFFKSQ GKRCVLFERN ENSBTAP00000009988/1-539 DDHVLILPIG HYQSVVELSA EVVEEVEKYK ATLRRFFRSR GKRCVLFERN 501 550 BACU012402/1-629 YKSHHLQLQV IPVPLSRCAT DDIKDAFITQ AQEQQIELLE IPEHSDIKQI ENSTTRP00000011278/1-538 YKSHHLQLQV IPVPLSRCAT DDIKDAFITQ AQEQQIELLE IPEHSDIKQI ENSP00000326411/1-538 YKSHHLQLQV IPVPISCSTT DDIKDAFITQ AQEQQIELLE IPEHSDIKQI bmy_14127T0/1-524 YKSHHLQLQV IPVPLSRCAT DDIKDAFITQ AQEQQIELLE IPEHSDIKQI ENSBTAP00000009988/1-539 YKSHHLQLQV IPVPLSSCAT DDIKDAFITQ AQEQQIELLE IPEHSDIKQI 551 600 BACU012402/1-629 AQPGAAYFYV ELDTGEKLFH RIKKNFPLQF GREVLASEAI LNIPDKSDWR ENSTTRP00000011278/1-538 AQPGAAYFYV ELDTGEKLFH RIKKNFPLQF GREVLASEAI LNIPDKSDWR ENSP00000326411/1-538 AQPGAAYFYV ELDTGEKLFH RIKKNFPLQF GREVLASEAI LNVPDKSDWR bmy_14127T0/1-524 AQPGAAYFYV ELDTGEKLFH RIKKNFPLQF GREVLASEAI LNIPDKSDWR ENSBTAP00000009988/1-539 AQPGAAYFYV ELDTGEKLFH RIKKNFPLQF GREVLASEAI LNIPDKSDWR 601 650 BACU012402/1-629 QCQISKEEEE TLARRFRKDF EPFDFTLGD- ENSTTRP00000011278/1-538 QCQISKEEEE TLARHFRKDF EPFDFTLDD- ENSP00000326411/1-538 QCQISKEDEE TLARRFRKDF EPYDFTLDD- bmy_14127T0/1-524 QCQISKEEEE TLARRFRKDF EPFDFTLGD- ENSBTAP00000009988/1-539 KCQMSKEEEE TLARRFRKDF EPFDFTVDDD