KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:39:47 2014 Check: 00 .. Name: ENSTTRP00000007743/1-535 Len: 541 Check: 4528 Weight: 1.00 Name: ENSP00000442436/1-535 Len: 541 Check: 3149 Weight: 1.00 Name: ENSBTAP00000009950/1-524 Len: 541 Check: 7538 Weight: 1.00 Name: bmy_03036T0/1-352 Len: 541 Check: 3375 Weight: 1.00 Name: BACU000552/1-401 Len: 541 Check: 520 Weight: 1.00 // 1 50 ENSTTRP00000007743/1-535 ---PAMEAPP DPGPHASASA SAAAPLRAPE VARLREEQEK VVTNCQEKIQ ENSP00000442436/1-535 MEAPTVETPP DPSP-PSAPA PALVPLRAPD VARLREEQEK VVTNCQERIQ ENSBTAP00000009950/1-524 ---------M EAPPDPRPHA SAAAPLRAPE VARLREEQEK VVTNCQEKIQ bmy_03036T0/1-352 ---------- ---------- ---------- ---------- ---------- BACU000552/1-401 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000007743/1-535 HWKKVDNDYN ALEERLSTLP DKLSYNIMVP FGPFAFMPGK LVHTNEVTVL ENSP00000442436/1-535 HWKKVDNDYN ALRERLSTLP DKLSYNIMVP FGPFAFMPGK LVHTNEVTVL ENSBTAP00000009950/1-524 HWKKVDNDYN ALQERLSTLP DKLSYNIMVP FGPFAFMPGK LVHTNEVTVL bmy_03036T0/1-352 ---------- ---------- --------MA TGPIC----- ---------- BACU000552/1-401 --KKVDNDYN ALEERLSTLP DKLSYNIMVP FGPFAFMPGK LVHTNEVTVL 101 150 ENSTTRP00000007743/1-535 LGDNWFAKCS AKQAVGLVEH RKEHVRKTID D-KKVMKNFE SRVEFTEDLQ ENSP00000442436/1-535 LGDNWFAKCS AKQAVGLVEH RKEHVRKTID DLKKVMKNFE SRVEFTEDLQ ENSBTAP00000009950/1-524 LGDNWFAKCS AKQAVGLVEH RKEHVRKTID DLKKVMKNFE SRVEFTEDLQ bmy_03036T0/1-352 --------C- ---------- ---HVRKTID DLKKVMKNFE SRVEFTEDLQ BACU000552/1-401 LGDNWFAKCS AKQAVGLVEH RKEHVRKTID DLKKVMKFFE SRVEFTEDLQ 151 200 ENSTTRP00000007743/1-535 KMSDAAGDIV DIREEIKTDF EFKAKHRIAH KPHSKPKTSG IFEAEFSNDL ENSP00000442436/1-535 KMSDAAGDIV DIREEIKCDF EFKAKHRIAH KPHSKPKTSD IFEADIANDV ENSBTAP00000009950/1-524 KMSDAAGDIV DIREEIKTDF EFKAKHRIAH KPHSKPKTSD IFEAEFANDL bmy_03036T0/1-352 KMSDAAGDIV DIREEIKTDF EFK------- ---------- ---------- BACU000552/1-401 KMSDAAGDIV DIREEIKTDF EFKAKHRIAH KPHSKPKTSD IFEVEFSNDL 201 250 ENSTTRP00000007743/1-535 KSKDLLADKE LWDRLEELER QEELLGEIDI DXXXXXXXXX XXX--XXXXX ENSP00000442436/1-535 KSKDLLADKE LWARLEELER QEELLGE--L DSKPDTVIAN GEDTTSSEEE ENSBTAP00000009950/1-524 KSKDLLADKE LWDRLEELER QEELLGEIDI DSKPDTVIAN GED-VSSEEE bmy_03036T0/1-352 ---------- ---------- ---------- ---------- -ED-TSSEEE BACU000552/1-401 KSKDLLADKE LWDRLEELER QEELLGEIDI DSKPDTVIAN GED-TSSEEE 251 300 ENSTTRP00000007743/1-535 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000442436/1-535 KEDRNTNVNA MHQVTDSHTP --CHKDVASS EPFSGQVNSQ LNCSVNGSSS ENSBTAP00000009950/1-524 KEDQNINVNM MHQVTDSLAL SSCYNSLTNS ELFNGQVNSP LNYSVNGSSS bmy_03036T0/1-352 KEDQNINVNM MNQVTDSLTP SNCYQNVTNS ELFNGQVNSQ WNCSMNGSNS BACU000552/1-401 KEDQNINVNM MNQV------ ---------- ---------- ---------- 301 350 ENSTTRP00000007743/1-535 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000442436/1-535 YHSDDDDDDD DDDDDDNIDD DDGDNDHEAL GVGDNSIPTI YFSHTVEPKR ENSBTAP00000009950/1-524 YHSNEDDDDN ND------DG GDSENDHDTL GVEDNSIPTI YFSHTVEPKR bmy_03036T0/1-352 YHXNEDEEDD DDD-----DG GDNENDHDTL GAEDNSIPTI YFSHTVEPKR BACU000552/1-401 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000007743/1-535 VRINTGKNTT LKFSEKKEEA KRKRKNSSGS GHSPQELPMI RTPADIYRVF ENSP00000442436/1-535 VRINTGKNTT LKFSEKKEEA KRKRKNSTGS GHSAQELPTI RTPADIYRAF ENSBTAP00000009950/1-524 VRINTGKNTT LKFSEKKEEA KRKRKNSSGS GHSPQELPMI RTPADIYRVF bmy_03036T0/1-352 VRINTGKNTT LKFSEKKEEA KRKRKNSSGS GHSPQDLPMI RTPADIYRVF BACU000552/1-401 -RINTGKNTT LKFSEKKEEA KRKRKNSSGS GHSPQDLPMI RTPADIYRVF 401 450 ENSTTRP00000007743/1-535 VDIVNGEYVP RKSILKSRSR ENSVCSDTSE SSAADFDDRR GVLRSISCEE ENSP00000442436/1-535 VDVVNGEYVP RKSILKSRSR ENSVCSDTSE SSAAEFDDRR GVLRSISCEE ENSBTAP00000009950/1-524 VDVVNGEYVP RKSILKSRSR ENSVCSDTSE SSAADFDDRR GVLRSISCEE bmy_03036T0/1-352 VDIVNGEYVP RKSILKSRSR ENSVCSDTSE SSAADFDDRR GVLRSISCEE BACU000552/1-401 VDIVNGEYVP RKSILKSRSR ENSVCSDTSE SSAADFDDRR GVLRSISCEE 451 500 ENSTTRP00000007743/1-535 ATCSDANESI LDEEQQENHQ KKLFPLSVTP EAFSGTVIEK EFLSPSLTPH ENSP00000442436/1-535 ATCSDTSESI LEEEPQEN-Q KKLLPLSVTP EAFSGTVIEK EFVSPSLTPP ENSBTAP00000009950/1-524 ATCSDASESI LEEE-QENHQ KKLLPLSVTP EAFSGTVIEK EFLSPSLTPH bmy_03036T0/1-352 ATCSDANESI LDEEQQENHQ KKLLPLSVTP EAFSGTVIEK EFLSPSLTPH BACU000552/1-401 ATCSDANESI LDEEQQENHQ KKLLPLSVTP EAFSGTVIEK EFLSPSLTPH 501 550 ENSTTRP00000007743/1-535 PAMAHPVLPT IPERKEVLSE VSEGTTKRVS KFKAARLQQK N ENSP00000442436/1-535 PAIAHPALPT IPERKEVLLE ASEETGKRVS KFKAARLQQK D ENSBTAP00000009950/1-524 PAMAHPVLPT IPERKEVLSE VSEGTTKRVS KFKAARLQQK N bmy_03036T0/1-352 PAMAHPVLPT IPERKEVLSE VSEGTTKRVS KFKAARLQQK N BACU000552/1-401 PAMAHPVLPT IPERKEVLSE VSEGTAKRVS KFKAARLQQK N