KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:39:14 2014 Check: 00 .. Name: ENSTTRP00000000564/1-547 Len: 1200 Check: 2916 Weight: 1.00 Name: ENSP00000333292/1-549 Len: 1200 Check: 2553 Weight: 1.00 Name: BACU006943/1-964 Len: 1200 Check: 3149 Weight: 1.00 Name: ENSBTAP00000009765/1-628 Len: 1200 Check: 1157 Weight: 1.00 Name: bmy_00218T0/1-436 Len: 1200 Check: 8214 Weight: 1.00 // 1 50 ENSTTRP00000000564/1-547 MMCLECASAA AGGAEEEEAD AERRRRRRGA ---------- ---------- ENSP00000333292/1-549 MMCLECASAA AGGAEEEEAD AERRRRRRGA ---------- ---------- BACU006943/1-964 -MSVECGEPG PEGLQGWSLG PGGHSGAMGS GPCPSPSTLT PWSLPRWRAY ENSBTAP00000009765/1-628 ---------- ---------- ---------- ---------- ---------- bmy_00218T0/1-436 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000000564/1-547 ---------- ---------- ---------- ---------- ---------- ENSP00000333292/1-549 ---------- ---------- ---------- ---------- ---------- BACU006943/1-964 VAAAVLCYIN LLNYMNWFII AGVLLDVQKF FQISDSDAGL LQTVFVGCLL ENSBTAP00000009765/1-628 ---------- ---------- ---------- ---------- ---------- bmy_00218T0/1-436 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000000564/1-547 ---------- ---------- ---------- ---------- ------QRGA ENSP00000333292/1-549 ---------- ---------- ---------- ---------- ------QRGA BACU006943/1-964 LSAPVFGYLG DRHNRKATLS LGILLWSGAG LSSSFISPRY SWLFFLSRGV ENSBTAP00000009765/1-628 ---------- ---------- ---------- ---------- ---------- bmy_00218T0/1-436 ---------- ---------- ---------- ---------- ---VWPRLPL 151 200 ENSTTRP00000000564/1-547 GGGG------ ---------- ---------- ---------- ---------- ENSP00000333292/1-549 GGSG------ ---------- ---------- ---------- ---------- BACU006943/1-964 VGTGTASYST IAPTVLGDLF VRDQRTRVLA IFYIFIPVGS GLGYVLGSAV ENSBTAP00000009765/1-628 ---------- ---------- ---------- ---------- ---------- bmy_00218T0/1-436 SGSG------ ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000000564/1-547 ---------- ---------- ---------- ---------- ---------- ENSP00000333292/1-549 ---------- ---------- ---------- ---------- ---------- BACU006943/1-964 TELTGNWRWA LRIMPCLEAV ALTLLIVLVP DPPRGAAEKQ GVVTVGGPRS ENSBTAP00000009765/1-628 ---------- ---------- ---------- ---------- ---------- bmy_00218T0/1-436 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000000564/1-547 --CCGARAAG AAG------- ---------- ---------- ---------- ENSP00000333292/1-549 --CCGARGAG GAG------- ---------- ---------- ---------- BACU006943/1-964 TWCEDVRYLG RNWSFVWSTL GVTAMAFVTG ALGFWAPKFL FEARVVHGLQ ENSBTAP00000009765/1-628 ---------- ---------- ---------- ---------- ---------- bmy_00218T0/1-436 --CLLSRHLA SRW------- ---------- ---------- ---------- 301 350 ENSTTRP00000000564/1-547 ---------- ---------- ---------- ---------- ---------- ENSP00000333292/1-549 ---------- ---------- ---------- ---------- ---------- BACU006943/1-964 LPCFREPCNS QDSLIFGILT VVTGLVGVIL GAEASRRYKK VNPRAEPLIC ENSBTAP00000009765/1-628 ---------- ---------- ---------- ---------- ---------- bmy_00218T0/1-436 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000000564/1-547 ---------- ---------- ---------- ---------- ---------- ENSP00000333292/1-549 ---------- ---------- ---------- ---------- ---------- BACU006943/1-964 AASLLAAASC LYLALILAPT TLLASYVRNL GVGVFTLKPC RASRAEGAEV ENSBTAP00000009765/1-628 ---------- ---------- ---------- ---------- ---------- bmy_00218T0/1-436 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000000564/1-547 ---------- ---------V ATADDEVQTL SGSVRRA--- ---------- ENSP00000333292/1-549 ---------- ---------V SAAGDEVQTL SGSVRRA--- ---------- BACU006943/1-964 SRSRAEAMVF LALGELLLSC NWAVVADILL SVVVPRCRGT AEALQITVGH ENSBTAP00000009765/1-628 ---------- ---------- ---------- ---------- ---------- bmy_00218T0/1-436 ---------- ---------V VWAG------ ---------- ---------- 451 500 ENSTTRP00000000564/1-547 ---PSAPP-- ---------- ---------- ---------- ---------- ENSP00000333292/1-549 ---PTGPP-- ---------- ---------- ---------- ---------- BACU006943/1-964 ILGDAGSPYL TGLISSALRA GRPDSYLQRF LSLQQSFLCC AFVIALGGGC ENSBTAP00000009765/1-628 ---------- ---------- ---------- ---------- ---------- bmy_00218T0/1-436 ---------- ---------- ---------- ---------- ---------- 501 550 ENSTTRP00000000564/1-547 -STPSTPSCA AAAKGLGAQQ PKPASLGRGR GAAAAILSLC NVLNYLDRYT ENSP00000333292/1-549 -GTPGTPGCA ATAKGPGAQQ PKPASLGRGR GAAAAILSLG NVLNYLDRYT BACU006943/1-964 FXTPSTPSCA AAAKGLGAQQ PKPASLGRGR GAAAAILSLG NVLNYLDRYT ENSBTAP00000009765/1-628 ---------- ---------- ---------- ---------- ---------- bmy_00218T0/1-436 ---------- ----GLSHET PVPH------ ------LPLS S--------- 551 600 ENSTTRP00000000564/1-547 VA-VLLDIQQ HFGVKDRGAG LLQSAFICSF MVAAPIFGYL GDRFNRKVIL ENSP00000333292/1-549 VAGVLLDIQQ HFGVKDRGAG LLQSVFICSF MVAAPIFGYL GDRFNRKVIL BACU006943/1-964 VAGVLLDIQQ HFGVKDRGAG LLQSVFICSF MVAAPIFGYL GDRFNRKVIL ENSBTAP00000009765/1-628 ---------- ---------- LSHAVFICSF MVAAPIFGYL GDRFNRKVIL bmy_00218T0/1-436 ---------- ---------- -PHAVFICSF MVAAPIFGYL GDRFNRKVIL 601 650 ENSTTRP00000000564/1-547 SCGIFFWSAV TFSSSFIPQQ HFWLLVLSRG LVGIGEASYS TIAPTIIGDL ENSP00000333292/1-549 SCGIFFWSAV TFSSSFIPQQ YFWLLVLSRG LVGIGEASYS TIAPTIIGDL BACU006943/1-964 SCGIFFWSAV TFSSSFIPQQ HFWLLVLSRG LVGIGEASYS TIAPTIIGDL ENSBTAP00000009765/1-628 SCGIFFWSAV TFSSSFIPQQ HFWLLVLSRG LVGIGEASYS TIAPTIIGDL bmy_00218T0/1-436 SCGIFFWSAV TFSSSFIPQQ HFWLLVLSRG LVGIGEASYS TIAPTIIGDL 651 700 ENSTTRP00000000564/1-547 FTKNTRTLML SVFYFAIPLG -GLGYITGSS VKQAAGDWHW ALRVSPILGM ENSP00000333292/1-549 FTKNTRTLML SVFYFAIPLG SGLGYITGSS VKQAAGDWHW ALRVSPVLGM BACU006943/1-964 FTKNTRTLML SVFYFAIPLG SGLGYITGSS VKQAAGDWHW ALRVSPILGM ENSBTAP00000009765/1-628 FTKNTRTLML SVFYFAIPLG SGLGYITGSS VKQAAGDWHW ALRVSPILGM bmy_00218T0/1-436 FTKNTRTLML SVFYFAIPLG SGLGYITGSS VKQAAGDWHW ALRVSPILGM 701 750 ENSTTRP00000000564/1-547 ITGTLILVLV PATRRGHADQ LGGQLKARTS WLRDMKALIR NRSYVFSSLA ENSP00000333292/1-549 ITGTLILILV PATKRGHADQ LGDQLKARTS WLRDMKALIR NRSYVFSSLA BACU006943/1-964 ITGTLILVLV PATKRGHADQ LGGQLKARTS WLRDMKALIR NRSYVFSSLA ENSBTAP00000009765/1-628 ITGTLILVLV PATKRGHADQ LGGQLKARTS WLRDMKALIR NRSYVFSSLA bmy_00218T0/1-436 ITGTLILVLV PATKRGHADQ LGGQLKARTS WLRDMKALIR NRSYVFSSLA 751 800 ENSTTRP00000000564/1-547 TSAVSFATGA LGMWIPLYLH RAQVVQKAAE TCSSPPCAAK DSLIFGAITC ENSP00000333292/1-549 TSAVSFATGA LGMWIPLYLH RAQVVQKTAE TCNSPPCGAK DSLIFGAITC BACU006943/1-964 TSAVSFATGA LGMWIPLYLH RAQVVQKAAE TCSSPPCAAK DSLIFGAITC ENSBTAP00000009765/1-628 TSAVSFATGA LGMWIPLYLH RAQVVQKTAE TCSSPPCGAK DSLIFGAITC bmy_00218T0/1-436 TSAVSFATGA LGMWIPLYLH RAQVVQKAAE TCSSPPCAAK DSLIFGAITC 801 850 ENSTTRP00000000564/1-547 FTGFLGVVTG AGATRWCRLR TQRXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000333292/1-549 FTGFLGVVTG AGATRWCRLK TQRADPLVCA VGMLGSAIFI CLIFVAAKSS BACU006943/1-964 FTGFLGVVTG AGATRWCRLR TQRADPLVCA VGMLGSAIFI CLIFVAAKSS ENSBTAP00000009765/1-628 FTGFLGVVTG AGATRWCRLR TQRADPLVCA VGMLGSAIFI CLIFVAAKSS bmy_00218T0/1-436 FTGFLGVVTG AGATRWCRLR TQRADPLVCA VGMLGSAIFI CLIFVAAKSS 851 900 ENSTTRP00000000564/1-547 XXGAYICIFV GETLLFSNWA ITADILMYVV IPTRRATAVA LQSFTSHLLG ENSP00000333292/1-549 IVGAYICIFV GETLLFSNWA ITADILMYVV IPTRRATAVA LQSFTSHLLG BACU006943/1-964 IVGAYICIFV GETLLFSNWA ITADILMYVV IPTRRATAVA LQSFTSHLLG ENSBTAP00000009765/1-628 IVGAYICIFV GETLLFSNWA ITADILMYVV IPTRRATAVA LQSFTSHLLG bmy_00218T0/1-436 IVGAYICIFV GETLLFSNWA ITADILMYVV IPTRRATAVA LQSFTSHLLG 901 950 ENSTTRP00000000564/1-547 DAGSPYLIGF ISDLIRQSTK DSPLWEFLSL GYALMLCPFV VVLGGMFFLA ENSP00000333292/1-549 DAGSPYLIGF ISDLIRQSTK DSPLWEFLSL GYALMLCPFV VVLGGMFFLA BACU006943/1-964 DAGSPYLIGF ISDLIRQSTK DSPLWEFLSL GYALMLCPFV VVLGGMFFLA ENSBTAP00000009765/1-628 DAGSPYLIGF ISDLIRQSTK DSPLWEFLSL GYALMLCPFV VVLGGMFFLA bmy_00218T0/1-436 DAGSPYLIGF ISDLIRQSTK DSPLWEFLSL GYALMLCPFV VVLGGMFFLA 951 1000 ENSTTRP00000000564/1-547 TALFFLSDRA KAEQQVNQLV MPCASVKV-- ---------- ---------- ENSP00000333292/1-549 TALFFVSDRA RAEQQVNQLA MPPASVKV-- ---------- ---------- BACU006943/1-964 TALFFLSDRA KAEQQ----- ---------- ---------- ---------- ENSBTAP00000009765/1-628 TALFFLSDRA KAEQQ--ALP PPPGADEVPA QHVRPAGSRD AMLQSSARAR bmy_00218T0/1-436 TALFFLSDRA KAEQQ----- ---------- ---------- ---------- 1001 1050 ENSTTRP00000000564/1-547 ---------- ---------- ---------- ---------- ---------- ENSP00000333292/1-549 ---------- ---------- ---------- ---------- ---------- BACU006943/1-964 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009765/1-628 PPLMCHLDPR PSLPQGEPAG DASYIHESLR QCCWDNGPGL LPSLGGVPRH bmy_00218T0/1-436 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSTTRP00000000564/1-547 ---------- ---------- ---------- ---------- ---------- ENSP00000333292/1-549 ---------- ---------- ---------- ---------- ---------- BACU006943/1-964 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009765/1-628 PGPARLSRSF PCDPQQGTHR LWSGTAEWQW LQEAVSSTNL EGCVCWSHAL bmy_00218T0/1-436 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSTTRP00000000564/1-547 ---------- ---------- ---------- ---------- ---------- ENSP00000333292/1-549 ---------- ---------- ---------- ---------- ---------- BACU006943/1-964 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009765/1-628 GQAALRPQSG AQGPWGPRGR QPPMGAWGEA GLSPAYVILG PSLPSPDPGA bmy_00218T0/1-436 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSTTRP00000000564/1-547 ---------- ---------- ---------- ---------- ---------- ENSP00000333292/1-549 ---------- ---------- ---------- ---------- ---------- BACU006943/1-964 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009765/1-628 RRLDFPIQLA GQGAGCSFED PTAPGLHGKE GVQASGRHFW LPKGRVGEDL bmy_00218T0/1-436 ---------- ---------- ---------- ---------- ----------