KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:37:57 2014 Check: 00 .. Name: bmy_14282T0/1-393 Len: 709 Check: 5650 Weight: 1.00 Name: ENSTTRP00000004731/1-478 Len: 709 Check: 9667 Weight: 1.00 Name: BACU004262/1-665 Len: 709 Check: 6070 Weight: 1.00 Name: ENSP00000268699/1-478 Len: 709 Check: 1689 Weight: 1.00 Name: ENSBTAP00000009333/1-478 Len: 709 Check: 2337 Weight: 1.00 // 1 50 bmy_14282T0/1-393 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004731/1-478 ---------- ---------- ---------- ---------- ---------- BACU004262/1-665 MNLVFAGKAP SQRQVVLQLQ PTKGLTTWSS SSHTEPMDFE TASIELLLWS ENSP00000268699/1-478 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009333/1-478 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_14282T0/1-393 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004731/1-478 -------MAP KKKGKKGKAK GTPIVDGLAP EDMSKEQVVE HIGRIREELD BACU004262/1-665 EAIYLDDQAP KKKGKKGKAK GTPIVDGLAP EDMSKEQVEE HIGRVREELS ENSP00000268699/1-478 -------MAP KKKGKKGKAK GTPIVDGLAP EDMSKEQVEE HVSRIREELD ENSBTAP00000009333/1-478 -------MAP KKKGKKGKGK GTPIVDGLAP EDMSKEQVEE HIGRIREELD 101 150 bmy_14282T0/1-393 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004731/1-478 RERVERNYFQ LERDRIYTFW EITRRQLEEK KAELRNKDRE MEEAEERHQV BACU004262/1-665 REREERSYFQ LERDKIHTFW EITRRQLEEK KAELRNKDRE MEEAEERHQV ENSP00000268699/1-478 REREERNYFQ LERDKIHTFW EITRRQLEEK KAELRNKDRE MEEAEERHQV ENSBTAP00000009333/1-478 REREERNYFQ LERDKIHTFW EITRRQLEEK KAELRNKDRE MEEAEERHQV 151 200 bmy_14282T0/1-393 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004731/1-478 EIK------- ---------- ---------- ---------- ---------- BACU004262/1-665 EIKVGMCVQV GMCVQVGMCV QVGMCVQVGM CVQVGMCVQV GMCVQVGMCV ENSP00000268699/1-478 EIK------- ---------- ---------- ---------- ---------- ENSBTAP00000009333/1-478 EIK------- ---------- ---------- ---------- ---------- 201 250 bmy_14282T0/1-393 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004731/1-478 ---------- ---------- ---------- ---------- ---------- BACU004262/1-665 QVGMCVQVGM CVQVGMCVQV GMCVQVGMCV QVGMCVQVGM CVQVGMCVQV ENSP00000268699/1-478 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009333/1-478 ---------- ---------- ---------- ---------- ---------- 251 300 bmy_14282T0/1-393 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004731/1-478 ---------- ---------- ---------- -----VYKQK VKHLLYEHQN BACU004262/1-665 GMCVQVGMCV QVGMCVQVGM CVQVGMCVQV GMCVQVYKQK VKHLLYEHQN ENSP00000268699/1-478 ---------- ---------- ---------- -----VYKQK VKHLLYEHQN ENSBTAP00000009333/1-478 ---------- ---------- ---------- -----VYKQK VKHLLYEHQS 301 350 bmy_14282T0/1-393 ---------- -----TQKEH RVQEGRLCRD VRALKVGLKE QELASEVAVK ENSTTRP00000004731/1-478 SLMEMKAEGT VVMKLAQEER RAQEGALCRD MRALQVELKE QELAGELVVK BACU004262/1-665 SLMEMKAEGT VVMKLAQKEH RVQEGTLCRD VRALKVGLKE QELASEVAVK ENSP00000268699/1-478 NLTEMKAEGT VVMKLAQKEH RIQESVLRKD MRALKVELKE QELASEVVVK ENSBTAP00000009333/1-478 SLTEMKAEGT VVMKLAQKEH RAQEGTLRRD MRALKVELKE QELANEVMVK 351 400 bmy_14282T0/1-393 NLRLKHAEEI TKIRKDFERQ VREIEAKYDK KVRMLRDELD LRRKTEIHEV ENSTTRP00000004731/1-478 NLRLKHTEEI TKIRKDFERQ VREIEAKYDK KVRMLRDELD LRXXXXXXXX BACU004262/1-665 NLRLKHTEEI TKIRKDFERQ VREIEAKYDK KVRMLRDELD LRRKTEIHEV ENSP00000268699/1-478 NLRLKHTEEI TRMRNDFERQ VREIEAKYDK KMKMLRDELD LRRKTELHEV ENSBTAP00000009333/1-478 NLRLKHTEEI TKMRNDFERQ VREIEAKYDK KMKMLRDELD LRRKTEIHEV 401 450 bmy_14282T0/1-393 EERKNGQISM LMQRHEEAFT DIRNYYNEIT LNNLALINSL KEQIERMRKR ENSTTRP00000004731/1-478 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XEQMEAMRKK BACU004262/1-665 EERKNGQISM LMQRHEEAFT DIRNYYNEIT LNNLALISSL K--IERMRKR ENSP00000268699/1-478 EERKNGQIHT LMQRHEEAFT DIKNYYNDIT LNNLALINSL KEQMEDMRKK ENSBTAP00000009333/1-478 EERKNGQITT LMQRHEEAFT DIKNYYNDIT LNNLALINSL KEQMEDMRKK 451 500 bmy_14282T0/1-393 EELLEKEVTE ASTQNRRLAD PLQEARDEMS EMQKQLGGYE RDKQILLCTK ENSTTRP00000004731/1-478 ERHLEKEMME VSAQNRLLAD PLQKARDEMS EMQKQLGGYK RDKQILLCTK BACU004262/1-665 EELLEKEVTE ASTQNRRLAD PLQEARDEMS EMQKQLGGYE RDKQILLCTK ENSP00000268699/1-478 EDHLEREMAE VSGQNKRLAD PLQKAREEMS EMQKQLANYE RDKQILLCTK ENSBTAP00000009333/1-478 EEHLEKEMTE VAMQNRRLAD PLQKAREEMS DMQKKLGSYE RDKQILVCTK 501 550 bmy_14282T0/1-393 ARLKVTEKEL KSLRWEHEVL EQRFTKMPGR IPQVQQERDE LYRKFTAAVL ENSTTRP00000004731/1-478 ARLKVTEEEL KSLQWEHEVL EQRFIQ---- ---VQQERDG LYRKFTAAIL BACU004262/1-665 ARLKVTEKEL KSLRWEHEVL EQRFTK---- ---VQQERDE LYRKFTAAVL ENSP00000268699/1-478 ARLKVREKEL KDLQWEHEVL EQRFTK---- ---VQQERDE LYRKFTAAIQ ENSBTAP00000009333/1-478 ARLKVTEKEL KSLRWEHEVL EQRFIK---- ---VQQERDD LYHKFTSAIL 551 600 bmy_14282T0/1-393 EVQQRVGFQN LVLERKVQAL AAAVEKKEVQ FNEVLAASSL DPAALTLASR ENSTTRP00000004731/1-478 EVQQKVGLKN LVLERKVQAL ATAVEKKEVQ FNEVLAASNL DPAALTLVSR BACU004262/1-665 EVQQKVGFQN LVLERKVQAL AAVVEKKEVQ FNEVLAASSL DPAALTLVSR ENSP00000268699/1-478 EVQQKTGFKN LVLERKLQAL SAAVEKKEVQ FNEVLAASNL DPAALTLVSR ENSBTAP00000009333/1-478 EVQQKAGFRN LVLERKVQAL VAAVEKKEVQ FNEVLAASNL DPAALTLVSR 601 650 bmy_14282T0/1-393 KLEVGPGGSR GGASGGLGSG RGSCLVPQPP SLSGESQFAS GRGGCGFLGP ENSTTRP00000004731/1-478 KLE------- ---------- --DVLESKNS TIK-DLQYEL ---------- BACU004262/1-665 KLE------- ---------- --DVLESKNS TIK-DLQYEL ---------- ENSP00000268699/1-478 KLE------- ---------- --DVLESKNS TIK-DLQYEL ---------- ENSBTAP00000009333/1-478 KLE------- ---------- --DVLESKNS AIK-DLQYEL ---------- 651 700 bmy_14282T0/1-393 SAQACVCHRA PQVPGLCPSA SEVCP-GPSL ASRHLRARVH CPFQLSLSAK ENSTTRP00000004731/1-478 -ARVCKAHND L----LRTYE AKLLAFGVPL DNVGFKPLET AVIGQTLGQG BACU004262/1-665 -ARVCKAHND L----LRTYE AKLLAFGVPL DNVGFKPLET AVIGQTLGQG ENSP00000268699/1-478 -AQVCKAHND L----LRTYE AKLLAFGIPL DNVGFKPLET AVIGQTLGQG ENSBTAP00000009333/1-478 -ARVCKAHND L----LRTYE AKLLAFGVPL DNVGFKPLET AVIGQTLGQG 701 750 bmy_14282T0/1-393 ATAAVRLGH ENSTTRP00000004731/1-478 PAGLVGTPT BACU004262/1-665 PAGLVGTPA ENSP00000268699/1-478 PAGLVGTPT ENSBTAP00000009333/1-478 PAGLVGTPT