KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:37:21 2014 Check: 00 .. Name: ENSP00000317257/1-542 Len: 650 Check: 3196 Weight: 1.00 Name: ENSBTAP00000009138/1-537 Len: 650 Check: 8468 Weight: 1.00 Name: bmy_00591T0/1-635 Len: 650 Check: 8042 Weight: 1.00 Name: BACU018607/1-547 Len: 650 Check: 8165 Weight: 1.00 // 1 50 ENSP00000317257/1-542 MKMMHMAHCV TLVQLSISCD HLIDKDIGSK SDPLCVLLQD VGGGSWAELG ENSBTAP00000009138/1-537 -----MAHCV TLVQLSVSCD HLIDKDIGSK SDPLCVLLQD VGGGNWTELG bmy_00591T0/1-635 -----MAHCV TLVQLSISCD HLIDKDISSK SDPLCVLLQD VGGGKWAELG BACU018607/1-547 -----MAHCV TLVQLSISCD HLIDKDISSK SDPLCVLLQD VGGGKWAELG 51 100 ENSP00000317257/1-542 RTERVRNCSS PEFSKTLQLE YRFETVQKLR FGIYDIDNKT PELRDDDFLG ENSBTAP00000009138/1-537 RTERVQNCSS PEFSKTLQLE YHFETVQKLR FGIYDIDNKT PELGDDDFLG bmy_00591T0/1-635 RTERVRNCSS PEFSKTLQLE YHFETVQKLR FGIYDIDNKT PELGDDDFLG BACU018607/1-547 RTERVRNCSS PEFSKTLQLE YHFETVQKLR FGIYDIDNKT PELGDDDFLG 101 150 ENSP00000317257/1-542 GAECSLGQIV S--------- -SQVLTLPLM LKPGKPAGRG TITVSAQELK ENSBTAP00000009138/1-537 GAECSLGQIV S--------- -SRMLTLPLM LKPGKPAGRG TITVSAQELK bmy_00591T0/1-635 GAECSLGQVV S--------- -SRILTLPLM LKPGKPAGRG TITVSAQELK BACU018607/1-547 GAECSLGQVA EPGIRILQTQ VNRILTLPLM LKPGKPAGRG TITVSAQELK 151 200 ENSP00000317257/1-542 DNRVVTMEVE ARNLDKKDFL GKSD------ ---------P FLEFFR---- ENSBTAP00000009138/1-537 DNRVVTMEVE ARNLDKKDFL GKSD------ ---------P FLEFFR---- bmy_00591T0/1-635 DSRVVTMEVE ARNLDKKEAL EVQELSGQGW CVGGGRVGRS FIVVVRCLSL BACU018607/1-547 DSRVVTMEVE ARNLDKKDFL GKSD------ ---------P FLEFFH---- 201 250 ENSP00000317257/1-542 ---------- ---------- -----QGDGK WHLVYRSE-- ---------- ENSBTAP00000009138/1-537 ---------- ---------- -----QGDGK WHLAYRSE-- ---------- bmy_00591T0/1-635 NCGLCDIDRT SWENRIRSWS FSIRVMGNGT WHTDLRCETP GIGYDGVGEN BACU018607/1-547 ---------- ---------- -----QGDGK WHLAYRSE-- ---------- 251 300 ENSP00000317257/1-542 ---------- ---------- ---------- ---------- --VIKNNLNP ENSBTAP00000009138/1-537 ---------- ---------- ---------- ---------- --VIKNNLNP bmy_00591T0/1-635 LLGLVITRVW STGLKSLHMG RKNGSSPHAN AELTRGLALH LQVIKNNLNP BACU018607/1-547 ---------- ---------- ---------- ---------- --VIKNNLNP 301 350 ENSP00000317257/1-542 TWKRFSVPVQ HFCGGNPSTP IQVQCSDYDS DGSHDLIGTF HTSLAQLQAV ENSBTAP00000009138/1-537 TWKRFSVPLQ HFCGGDASTP IQVRCSDYDS DGSHDLIGTF HTSLAQLQAA bmy_00591T0/1-635 TWKRFSVPLQ HFCGGDPSTP IQVRCSDYDS DGSHDLIGTF HTSLAQLQAV BACU018607/1-547 TWKRFSVPLQ HFCGGDPSTP IQVRCSDYDS DGSHDLIGTF HTSLAQLQAV 351 400 ENSP00000317257/1-542 PAEFECIHPE KQQKKKSYKN SGTIRVKICR VETEYSFLDY VMGGCQINFT ENSBTAP00000009138/1-537 PAEFECIHPE KQQKKKSYKN SGTICVKMCQ VETEHSFLDY VMGGCQINFT bmy_00591T0/1-635 PAEFECIHLE KQQKKKSYKN SGTICVKICQ VETEYSFLDY VMGGCQINFT BACU018607/1-547 PAEFECIHLE KQQKKKSYKN SGTICVKICQ VETEYSFLDY VMGGCQINFT 401 450 ENSP00000317257/1-542 VGVDFTGSNG DPSSPDSLHY LSPTGVNEYL MALWSVGSVV QDYDSDKLFP ENSBTAP00000009138/1-537 VGVDFTGSNG DPSSPDSLHY LSPTGVNEYL TALWSVGSVV QDYDSDKLFP bmy_00591T0/1-635 VGVDFTGSNG DPSSPDSLHY LSPAGVNEYL TALWSVGSVV QDYDSDKLFP BACU018607/1-547 VGVDFTGSNG DPSSPDSLHY LSPTGVNEYL TALWSVGSVV QDYDSDKLFP 451 500 ENSP00000317257/1-542 AFGFGAQVPP DWQVSHEFAL NFNPSNPYCA GIQGIVDAYR QALPQVRLYG ENSBTAP00000009138/1-537 AFGFGAQVPP DWQVSHEFAL NFNPSNPFCA GIQGIVDAYR QALPQVRLFG bmy_00591T0/1-635 AFGFGAQVPP DWQVSHEFAL NFNPNNPYCA GIQGIVDAYR QALPQVRLYG BACU018607/1-547 AFGFGAQVPP DWQVSHEFAL NFNPNNPYCA GVQGIVDAYR QALPQVRLYG 501 550 ENSP00000317257/1-542 PTNFAPIINH VARFAAQAAH QGTASQYFML LLLTDGAVTD VEATREAVVR ENSBTAP00000009138/1-537 PTNFAPIINH VARFAAQAAN QRNASQYFVL LLLTDGAVTD VEATREAVVR bmy_00591T0/1-635 PTNFAPIINH VARFAAQAAH QRTASQYFVL LLLTDGAVTD VEATREAVVR BACU018607/1-547 PTNFAPIINH VARFAAQAAH QRTASQYFVL LLLTDGAVTD VEATREAVVR 551 600 ENSP00000317257/1-542 ASNLPMSVII VGVGGADFEA MEQLDADGGP LHTRSGQAAA RDIVQFVPYR ENSBTAP00000009138/1-537 ASYLPMSVII VGVGCADFEA MEQLDADGGP LHTRSGEAAA RDIVQFVPYR bmy_00591T0/1-635 ASYLPMSVII VGVGGADFEA MEQLDADGGP LRTRSGEAAA RDIVQFVPYR BACU018607/1-547 ASYLPMSVII VGVGGADFEA MEQLDADGGP LRTRSGEAAA RDIVQFVPYR 601 650 ENSP00000317257/1-542 RFQNAPREAL AQTVLAEVPT QLVSYFRAQG WAPLKPLPPS AKDPAQAPQA ENSBTAP00000009138/1-537 RFQNAPREAL AQTVLAEVPT QLVSYFRAQG WAPFKPPPPA AKGPAQAPQA bmy_00591T0/1-635 RFQNAPREAL AQTVLAEVPT QLVSYFKAQG WAPFKPLPPA AKGPAQVPQA BACU018607/1-547 RFQNAPREAL AQTVLAEVPT QLVSYFKAQG WAPFKPLPPA AKGPAQVPQA