KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:37:20 2014 Check: 00 .. Name: ENSP00000363391/1-437 Len: 543 Check: 3107 Weight: 1.00 Name: ENSBTAP00000009127/1-433 Len: 543 Check: 4380 Weight: 1.00 Name: ENSTTRP00000016148/1-439 Len: 543 Check: 6990 Weight: 1.00 Name: bmy_00590T0/1-543 Len: 543 Check: 539 Weight: 1.00 Name: BACU020523/1-440 Len: 543 Check: 9058 Weight: 1.00 // 1 50 ENSP00000363391/1-437 MRRSSRPGSA SSSRKHTPNF FSE--NSSMS ITSEDSKGLR SAEPGPGEPE ENSBTAP00000009127/1-433 MRRSPRPGSA ASQHKHTPNF YSDNSNSSVS VTSGDSCGHR SAGPGPGEPE ENSTTRP00000016148/1-439 MQRRPRPGSA AFPHKHTPNF YSDNSNSSMS ITSGESCGHR SAGPEPGEPE bmy_00590T0/1-543 MRRSPRPGSA AFPHKHTPNF YSDNSNSSVS VTSGDSCGHR SAGPEPGEPE BACU020523/1-440 MRRSPRPGSA VFPHKHTPNF YSDNSNSSVS VTSGDSCGHR SAGPEPGEPE 51 100 ENSP00000363391/1-437 GRRARGPSCG EPALSAGVPG GTTWAGSSQQ KPAPRSHNWQ TACGAATVRG ENSBTAP00000009127/1-433 GRRARGSSCG EPALSAGVPG GTTWAGSSRQ KPAPRSHNGQ TACGAATVRG ENSTTRP00000016148/1-439 GRRGRGSSCG EPAMSAGVPG RTTKAESSRL KPAPRSHSGP TASGAATVRG bmy_00590T0/1-543 GRRARGSSCG EPALSAGVPG RTTRAGSSRL KPAPRSHNGP TACGAATVRG BACU020523/1-440 GRRARGSSCG EPALSAGVPG RTTRAGSSGL KPAPRSHNGP TACGAATVRG 101 150 ENSP00000363391/1-437 GAS------- ---------- ---------- ---------- ---------- ENSBTAP00000009127/1-433 GAS------- ---------- ---------- ---------- ---------- ENSTTRP00000016148/1-439 GAS------- ---------- ---------- ---------- ---------- bmy_00590T0/1-543 GASGAGGVEP GWGRGHRLGG GTTARLSFPG AGPQSAAREP GWGCSGTKAS BACU020523/1-440 GAS------- ---------- ---------- ---------- ---------- 151 200 ENSP00000363391/1-437 ---------- ---------- ---------- ----EPTGSP VVSEEPLDLL ENSBTAP00000009127/1-433 ---------- ---------- ---------- ---------- -VSEEQLDLL ENSTTRP00000016148/1-439 ---------- ---------- ---------- ----EPAGSP GVPEEQLD-L bmy_00590T0/1-543 EAALLLGWGT CGQVPGKQRA CGAQGPNGAP WAPAEPAGSP GVPEEQLDLL BACU020523/1-440 ---------- ---------- ---------- ----EPAGSP GVPEEQLDLL 201 250 ENSP00000363391/1-437 PTLDLRQEMP PPRVFKSFLS LLFQGLSVLL SLAGDVL--- ---------- ENSBTAP00000009127/1-433 PTLDLRQEMP SPQVSKSFLS LLFQVLSVLL SLVGDVL--- ---------- ENSTTRP00000016148/1-439 STLDPRQEIP PPRVSKSFLS PLFQVLSVLL SLVGGVL--- ---------- bmy_00590T0/1-543 STLDLRQEIP PPRVSKSFRS LLFQVLSVLL SLVGGVLELG LGHWGGVRGV BACU020523/1-440 STLDLRQEIP PPRVSKSFRS LLFQVLSVLL SLVGGVL--- ---------- 251 300 ENSP00000363391/1-437 ---------V SMYREVCSIR FLFTAVSLLS LFLSAFWLGL LYLVSPLENE ENSBTAP00000009127/1-433 ---------V SVYREVCSIR FLLTAVSLLS LFLAALWWGL LYLAPPLENE ENSTTRP00000016148/1-439 ---------V SVYREVCSVR FLLTAVSLLS LFLAALWWGL RYLAPPLENE bmy_00590T0/1-543 REGIGASASL RFFREVCSIR FLLTAVSLLS LFLAALWWGL LCLAPPLENE BACU020523/1-440 ---------V SVYREVCSIR FLLTAVSLLS LFLSALWWGL LCLAPPLENE 301 350 ENSP00000363391/1-437 PKEMLTLSEY HERVRSQGQQ LQQLQAELDK LHKEVSTVRA ANSERVAKLV ENSBTAP00000009127/1-433 PKEMLTLSEY HERVRSQGQQ LQQLQAELVK LHKEMSSVRA ANSERVAQLV ENSTTRP00000016148/1-439 PKEILTLSEY HERVRSQEQQ LQQLRAELVK LHKEVSSVRA ANSERVAKLV bmy_00590T0/1-543 PKEMLTLSEY HERVRSQGQQ LQQLRAELVK LHKEVSSVRA ANSERVAKLV BACU020523/1-440 PKEMLTLSEY HERVRSQGQQ LQQLRAELVK LHKEVSSVRA ANSERVAKLV 351 400 ENSP00000363391/1-437 FQRLNEDFVR KPDYALSSVG ASIDLQKTSH DYADRNTAYF WNRFSFWNYA ENSBTAP00000009127/1-433 FQRLSEDFVQ KPDYALSSVG ASIDLEKTSQ DYEDANTAYF WNRFSFWNYA ENSTTRP00000016148/1-439 FQRLSEDFVR KPDYALSSVG ASIDLEKTSP DYEDANTAYF WNRFSFWNYA bmy_00590T0/1-543 FQRLSEDFVR KPDYALSSVG ASIDLEKTSP DYEDANTAYF WNGFSFWNYA BACU020523/1-440 FQRLSEDFVR KPDYALSSVG ASIDLEKTSP DYEDANTAYF WNRFSFWNYA 401 450 ENSP00000363391/1-437 RPPTVILEPH VFPGNCWAFE GDQGQVVIQL PGRVQLSDIT LQHPPPSVEH ENSBTAP00000009127/1-433 RPPTVILEPD VFPGNCWAFE GDQGQVVIRL PGRVQLSDIT LQHPPPTVAH ENSTTRP00000016148/1-439 RPPTVILEPD VFPGNCWAFE GDQGQVVIQL PGRVQLSDIT LQHPPPSVAH bmy_00590T0/1-543 RPPTVILEPD VFPGNCWAFE GDQGQVVIQL PGRVQLSDIT LQHPPPSVAH BACU020523/1-440 RPPTVILEPD VFPGNCWAFE GDQGQVVIQL PGRVQLSDIT LQHPPPSVAH 451 500 ENSP00000363391/1-437 TGGANSAPRD FAVFGLQVYD ETEVSLGKFT FDVEKSEIQT FHLQNDPPAA ENSBTAP00000009127/1-433 TRGANSAPRD FAVYGLQVDG ETEVFLGKFT FDVEKSEIQT FHLQNDPPAA ENSTTRP00000016148/1-439 TRGAKSAPRD FAVYGLQVDD ETEVFLGKFT FDVEKSEIQT FHLENDPPAA bmy_00590T0/1-543 TRGAKSAPRD FAVYGLQVDD ETEVFLGKFT FDVEKSEIQT FHLENDPPAA BACU020523/1-440 TRGAKSAPRD FAVYGLQVDD ETEVFLGKFT FDVEKSEIQT FHLENDPPAA 501 550 ENSP00000363391/1-437 FPKVKIQILS NWGHPRFTCL YRVRAHGVRT SEGAEGSAQ- GPH ENSBTAP00000009127/1-433 FPKVKIQILS NWGHPRFTCL YRVRAHGIRT SEGAGDSATG GAH ENSTTRP00000016148/1-439 FPKVKIQILS NWGHPHFTCL YRVRAHGIQT SEGAGDSATG GAH bmy_00590T0/1-543 FPKVKIQILS NWGHPHFTCL YRVRAHGIQT SEGAGNSATG GTH BACU020523/1-440 FPKVKIQILS NWGHPHFTCL YRVRAHGIQT SEAAGDSATG GAH