KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:35:48 2014 Check: 00 .. Name: ENSP00000327246/1-457 Len: 544 Check: 1347 Weight: 1.00 Name: ENSBTAP00000008625/1-458 Len: 544 Check: 3410 Weight: 1.00 Name: ENSTTRP00000009129/1-456 Len: 544 Check: 6223 Weight: 1.00 Name: bmy_03300T0/1-407 Len: 544 Check: 9361 Weight: 1.00 Name: BACU015661/1-544 Len: 544 Check: 480 Weight: 1.00 // 1 50 ENSP00000327246/1-457 --MRPPSPLP ARWLCVLAGA --LAWALGPA G--------- ------GQAA ENSBTAP00000008625/1-458 --MRPTCPPP ARWFCLLTGA --LVCVLGPA G--------- ------GWAV ENSTTRP00000009129/1-456 --MRPPRPPP ARWLCVLVGA --LACALGPA G--------- ------GWEV bmy_03300T0/1-407 ---------- ---MTSDLGL --SRVQDKGE G--------- ------GWEV BACU015661/1-544 MSQGEGGQVE EMLINSDSGA ILLASAHSPV GTVTFFSLGR DEEADGGWEV 51 100 ENSP00000327246/1-457 RL-QEECDYV QMIEVQHKQC LEEAQLENET IGCSKMWDNL TCWPATPRGQ ENSBTAP00000008625/1-458 GLQQEECDYL RMIAVQHEQC LEEAQLENET AGCGKMWDNL TCWPATPRGQ ENSTTRP00000009129/1-456 GLQQEECDYM QMIKVQHNQC LKEAQLENET TGCSKMWDNL TCWPATPRGQ bmy_03300T0/1-407 GLQQEECDFM QMIEVQHNQC LEEAQLENET TGCSKMWDNL TCWPATPRGQ BACU015661/1-544 GLQQEECDFM QMIEVQHNQC LEEAQLENET TGCSKMWDNL TCWPATPRGQ 101 150 ENSP00000327246/1-457 VVVLACPLIF KLFSSIQGRN VSRSCTDEGW THLEPGPYPI ACGLDDKAAS ENSBTAP00000008625/1-458 VVVLACPLIF KLFSSIQGRN VSRSCTEAGW TPLEPGPYPV ACGLDDNSSS ENSTTRP00000009129/1-456 VVVLACPLIF KLFSPIQGRN VSRSCTDEGW TPLEPGPYPI ACGLDDNASS bmy_03300T0/1-407 VVVLACPLIF KLFSPIQGRN VSRSCTDEGW TPLEPGPYPI ACGLDDNASS BACU015661/1-544 VVVLACPLIF KLFSPIQGRN VSRSCTDEGW TPLEPGPYPV ACGLDDNASS 151 200 ENSP00000327246/1-457 LD-------- ---------- ---------- ---------- ---------- ENSBTAP00000008625/1-458 LD-------- ---------- ---------- ---------- ---------- ENSTTRP00000009129/1-456 LD-------- ---------- ---------- ---------- ---------- bmy_03300T0/1-407 LD-------- ---------- ---------- ---------- ---------- BACU015661/1-544 LDEAHIPGDA SSGSPDRVQE GASRRMTRSI KAEAAPPGQA TPLPRGSLDP 201 250 ENSP00000327246/1-457 ---------- ---------E QQTMFYGSVK TGYTIGYGLS LATLLVATAI ENSBTAP00000008625/1-458 ---------- ---------E QQTMFYSSVK TGYTIGYSLS LATLLVATAI ENSTTRP00000009129/1-456 ---------- ---------E QQTMFYSSVK TGYTVGYSLS LVTLLVATAI bmy_03300T0/1-407 ---------- --------EQ QQTMFYSSVK TGYTVGYSLS LATLLVATAI BACU015661/1-544 ALAGQTEPIP PATCRGETEQ QQTMFYSSVK TGYTVGYSLS LTTLLVATAI 251 300 ENSP00000327246/1-457 LSLFRKLHCT RNYIHMHLFI SFILRAAAVF IKDLALFDSG ESDQCSEGSV ENSBTAP00000008625/1-458 LSLFRKLHCT RNYIHMHLFI SFILRAAAVF IKDLALFNSG ETDHCSKGSV ENSTTRP00000009129/1-456 LSLFRKLHCT RNYIHIHLFV SFILRATAVF IKDLALFDSG ESDHCSKGSV bmy_03300T0/1-407 LSLFRKLHCT RNYIHMHLFI SFILRATAVF IKDLALFDGG ESDHCSKGSV BACU015661/1-544 LSLFRKLHCT RNYIHMHLFI SFILRATAVF IKDLALFDGG ESDHCSKGSV 301 350 ENSP00000327246/1-457 GCKAAMVFFQ YCVMANFFWL LVEGLYLYTL LAVSFFSERK YFWGYILIGW ENSBTAP00000008625/1-458 GCKAAVVLFQ YCVMANFFWL LVEGLYLHTL LAVSFFSERK YFWGYIFIGW ENSTTRP00000009129/1-456 GCKAAVVLFQ YCVMANFFWL LVEGLYLHTL LAVSFFSERK YFWGYIFIGW bmy_03300T0/1-407 GCKAAVVLFQ YCVMANFFWL LVEGLYLHTL LAVSFFSERK YFWGYIFIGW BACU015661/1-544 GCKAAVVLFQ YCVMANFFWL LVEGLYLHTL LAVSFFSERK YFWGYIFIGW 351 400 ENSP00000327246/1-457 GVPSTFTMVW TIARIHFEDY GCWDTINSSL WWIIKGPILT SILVNFILFI ENSBTAP00000008625/1-458 GVPSTFTLVW TIIRIHFEDY GCWDTINSSL WWIIKAPILA SILVNFILFI ENSTTRP00000009129/1-456 GVPSTFTMVW TIIRIHFEDY GCWDTIISSL WWIIKAPILA SILVNFILFI bmy_03300T0/1-407 G--------- ---------- ---------- ---------- --MVNFILFV BACU015661/1-544 GVPSTFTMVW TIIRIHFEDY GCWDTIISSL WWIIKAPILA SILVNFILFV 401 450 ENSP00000327246/1-457 CIIRILLQKL RPPDIRKSDS SPYSRLARST LLLIPLFGVH YIMFAFFPDN ENSBTAP00000008625/1-458 RIIGILVQKL RPPDVGKSDS SPYSRLAKST LLLIPLFGVH YIMFAFFPDN ENSTTRP00000009129/1-456 RIIRILVHKL RAPDVGKSDS SPYSRLAKS- LLLIPMFGVH YIMFV-FPDN bmy_03300T0/1-407 RIIRILVHKL RAPDVGKSDS SPYSRLAKST LLLIPLFGVH YIMFAFFPDN BACU015661/1-544 RIIRILVHKL RAPDVGKSDS SPYSRLAKST LLLIPLFGVH YIMFAFFPDN 451 500 ENSP00000327246/1-457 FKPEVKMVFE LVVGSFQGFV VAILYCFLNG EVQAELRRKW RRWHLQGVLG ENSBTAP00000008625/1-458 FKAEVKLVFE LVVGSFQGFV VAILYCFLNG EVQAELRRKW RRWHLQGVLG ENSTTRP00000009129/1-456 FKAEVKMVFE LVVGSFQGFV VAVLYCFLNG EVQAELRRKW RRWHLQGVLG bmy_03300T0/1-407 FKAEVKMVFE LVVGSFQGFV VAILYCFLNG EVQAELRRKW RRWHLQGVLC BACU015661/1-544 FKAEVKMVFE LVVGSFQGFV VAILYCFLNG EVQAELRRKW RRWHLQGVLC 501 550 ENSP00000327246/1-457 WNPKYRHPSG GSNGATCSTQ VSMLTRVSPG ARRSSSFQAE VSLV ENSBTAP00000008625/1-458 WDPKYQHPSA GSNGATCSTQ VSMLTRVSPG AGRSSSFQAE VSLV ENSTTRP00000009129/1-456 WKPKYQHPSA GSSGATCSTQ VSMLTRVSPG ARRSSSFQAE VSLV bmy_03300T0/1-407 WDPKYQHPSA GSSGATCSTQ VSMLTRVSPS ARRSSSFQAE VSLV BACU015661/1-544 WDPKYQPPSA GSSGATCSTQ VSMLTRVSPG ARRSSSFQAE VSLV