KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:35:36 2014 Check: 00 .. Name: ENSTTRP00000004612/1-1533 Len: 1533 Check: 3171 Weight: 1.00 Name: ENSP00000294724/1-1532 Len: 1533 Check: 3148 Weight: 1.00 Name: ENSBTAP00000008518/1-1532 Len: 1533 Check: 7060 Weight: 1.00 Name: bmy_16157T0/1-967 Len: 1533 Check: 9399 Weight: 1.00 Name: BACU002782/1-1532 Len: 1533 Check: 147 Weight: 1.00 // 1 50 ENSTTRP00000004612/1-1533 KMGHSKEIRI LLLNEMEKLE KTXXXXEQXX XXXXXXXXXX XXXXXXXXXX ENSP00000294724/1-1532 -MGHSKQIRI LLLNEMEKLE KTLFRLEQGY ELQFRLGPTL QGKAVTVYTN ENSBTAP00000008518/1-1532 -MGHSKQIRI LLLNEMEKLE RTLFRLEQGF ELQFRLGPTL QGKAVTVYTN bmy_16157T0/1-967 ---------- ------MSLL KCAFCL--GF ELQFRLGPTL QGKEVTVYTN BACU002782/1-1532 -MGHSKQIRI LLLNEMEKLE RTLFRLEQGF ELQFRLGPTL QGKEVTVYTN 51 100 ENSTTRP00000004612/1-1533 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXAG SFQYYFLQGN ENSP00000294724/1-1532 YPFPGETFNR EKFRSLDWEN PTEREDDSDK YCKLNLQQSG SFQYYFLQGN ENSBTAP00000008518/1-1532 YPLPGEAFNR EKFRSLEWEN PTEREDDSDK YCKLNLQQAG SFQYYFLQGN bmy_16157T0/1-967 YPFPGEAFNR EKFRSLEWEN PTEREDDSDK YCKLNLQQAG SFQYYFLQGN BACU002782/1-1532 YPFPGEAFNR EKFRSLEWEN PTEREDDSDK YCKLNLQQAG SFQYYFLQGN 101 150 ENSTTRP00000004612/1-1533 EKSGGGYIVV DPILRVGADN HVLPLDCVTL QTFLSKCMGP FDEWESRLRV ENSP00000294724/1-1532 EKSGGGYIVV DPILRVGADN HVLPLDCVTL QTFLAKCLGP FDEWESRLRV ENSBTAP00000008518/1-1532 EKSGGGYIVV DPILRVGADN HVLPLDCVTL QTFLAKCMGP FDEWESRLMV bmy_16157T0/1-967 EKSGGGYIVV DPILRVGADN HMLPLDCVTL QTFLAKCMGP FDEWESRLSV BACU002782/1-1532 EKSGGGYIVV DPILRVGADN HVLPLDCVTL QTFLAKCMGP FDEWESRLRV 151 200 ENSTTRP00000004612/1-1533 AKESGYNMIH FTPLQTLGLS RSCYSLADQL ELNPDFSRPN KKYTWTDVGQ ENSP00000294724/1-1532 AKESGYNMIH FTPLQTLGLS RSCYSLANQL ELNPDFSRPN RKYTWNDVGQ ENSBTAP00000008518/1-1532 AKESGYNMIH FTPLQTLGLS RSCYSLADQL ELNPDFSRPN KKYTWTDVGQ bmy_16157T0/1-967 AKESGYNMIH FTPLQTLGLS RSSYSLADQL ELNPDFSRPN KKYTWTDVGQ BACU002782/1-1532 AKESGYNMIH FTPLQTLGLS RSSYSLADQL ELNPDFSRPN KKYTWTDVGQ 201 250 ENSTTRP00000004612/1-1533 LVEKLKKEWN ILCITDVVYN HTATKSKWLQ EHPESAYNLV NSPHLKPAWV ENSP00000294724/1-1532 LVEKLKKEWN VICITDVVYN HTAANSKWIQ EHPECAYNLV NSPHLKPAWV ENSBTAP00000008518/1-1532 LVQKLKKEWN MLCITDVVYN HTAANSRWLQ EHPESAYNLV NSPHLKPAWV bmy_16157T0/1-967 LVEKLKKEWN ILCITDVVYN HTAAKSSWLQ EHPESAYNLV NSPHLKPAWV BACU002782/1-1532 LVEKLKKEWN ILCITDVVYN HTAAKSSWLQ EHPESAYNLV NSPHLKPAWV 251 300 ENSTTRP00000004612/1-1533 LDRALWHLSC DVAEGKYKER GVAALIENDH QMNCIRKIIW EDIFPKIHLW ENSP00000294724/1-1532 LDRALWRFSC DVAEGKYKEK GIPALIENDH HMNSIRKIIW EDIFPKLKLW ENSBTAP00000008518/1-1532 LDRALWHLSC DVAEGKYKDR GVPALIENDH QMNCIRKVIW EDIFPKTQLW bmy_16157T0/1-967 LDRALWHLSC DVAEGKYKER GVAALIENDH QMNCIQKIIW EDIFPKIHLW BACU002782/1-1532 LDRALWHLSC DVAEGKYKER GVAALIENDH QMNCIRKLIW EDIFPKIHLW 301 350 ENSTTRP00000004612/1-1533 EFFQVDVDKA VEQFRGLLTQ XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000294724/1-1532 EFFQVDVNKA VEQFRRLLTQ ENRRVTKSDP NQHLTIIQDP EYRRFGCTVD ENSBTAP00000008518/1-1532 EFFQVDVHKA VEQFRGLLTQ ENRKTTRPDP DHHLKIIQDP EYRRLGCTVD bmy_16157T0/1-967 EFFQVDVDKA VEQFRGLLTQ ENKKTTKPDP KQHLKIIQDP EYRRLGCTVD BACU002782/1-1532 EFFQVDVDKA VEQFRGLLTQ ENRKTTKPDP KQHLKIIQDP EYRRLGCTVD 351 400 ENSTTRP00000004612/1-1533 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000294724/1-1532 MNIALTTFIP HDKGPAAIEE CCNWFHKRME ELNSEKHRLI NYHQEQAVNC ENSBTAP00000008518/1-1532 MNVALATFIP HDNGPAAINE CCNWFRKRIE ELNSEKHQLI NYHQEQAVNC bmy_16157T0/1-967 MNVALATFIP HDNGPAAINE CCSWFQKRIE ELNSEKHQLV NYHQEQAVNC BACU002782/1-1532 MNVALATFIP HDNGPAAINE CCSWFQKRIE ELNSEKHQLV NYHQEQAVNC 401 450 ENSTTRP00000004612/1-1533 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXY FTFPFEEMPL STEESMIHVP ENSP00000294724/1-1532 LLGNVFYERL AGHGPKLGPV TRKHPLVTRY FTFPFEEIDF SMEESMIHLP ENSBTAP00000008518/1-1532 LLGNVFYERL ADHGPKLGPV TRKHPLVTRY FTFPFEDISL SVEESMIHVP bmy_16157T0/1-967 ILGNVFYERL AGHGPKLGPV TREHPLVTRY FTFPFEETSL STEESMIHVP BACU002782/1-1532 ILGNVFYERL AGHGPKLGPV TREHPLVTRY FTFPFEETSL STEESMIHVP 451 500 ENSTTRP00000004612/1-1533 NKACFLMAHN GWVMGDDPLR NFAEPGSDVY LRRELICWGD SVKLRYGKKP ENSP00000294724/1-1532 NKACFLMAHN GWVMGDDPLR NFAEPGSEVY LRRELICWGD SVKLRYGNKP ENSBTAP00000008518/1-1532 NKACFLMAHN GWVMGDDPLR NFAEPGSDVY LRRELICWGD SVKLRYGKKP bmy_16157T0/1-967 NKACFLMAHN GWVMGDDPLR NFAEPGSDVY LRRELICWGD SVKLRYGKKP BACU002782/1-1532 NKACFLMAHN GWVMADDPLR NFAEPGSDVY LRRELICWGD SVKLRYGKKP 501 550 ENSTTRP00000004612/1-1533 EDCPYLWAHM KKYTEITATY FQGVRLDNCH STPLHVAEYM LDAARKLQPN ENSP00000294724/1-1532 EDCPYLWAHM KKYTEITATY FQGVRLDNCH STPLHVAEYM LDAARNLQPN ENSBTAP00000008518/1-1532 EDCPYLWAHM KKYTEITATY FQGVRLDNCH STPLHVAEYM LDAARKLQPN bmy_16157T0/1-967 EDCPYLWAHM KKYTEITATY FQGVRLDNCH STPLHVAEYM LDAARKLQPN BACU002782/1-1532 EDCPYLWAHM KKYTEITATY FQGVRLDNCH STPLHVAEYM LDAARKLQPN 551 600 ENSTTRP00000004612/1-1533 LYVVAELFTG SEDLDNIFVT RLGISSLIRE AMSAYDSHEE GRLVYRYGGE ENSP00000294724/1-1532 LYVVAELFTG SEDLDNVFVT RLGISSLIRE AMSAYNSHEE GRLVYRYGGE ENSBTAP00000008518/1-1532 LYVVAELFTG SEDLDNVFVT RLGISSLIRE AMSAYDSHEE GRLVYRYGGE bmy_16157T0/1-967 LYVVAELFTG SEDLDNIFVT RLGISSLIRE AMSACDSHEE GRLVYRYGGE BACU002782/1-1532 LYVVAELFTG SEDLDNIFVT RLGISSLIRE AMSARDSHEE GRLVYRYGGE 601 650 ENSTTRP00000004612/1-1533 PVGSFVQPCL RPLMPAIAHA LFMDVTHDNE CPIVXXXXXX XXXXXXXXXX ENSP00000294724/1-1532 PVGSFVQPCL RPLMPAIAHA LFMDITHDNE CPIVHRSAYD ALPSTTIVSM ENSBTAP00000008518/1-1532 PVGSFVQPCL RPLVPAIAHA LFMDITHDNE CPIVHRSAYD ALPSTTIVSM bmy_16157T0/1-967 PVGSFVQPCL RPLMPAIAHA LFMDMTHDNE CPIVHRSAYD ALPSSTIVSM BACU002782/1-1532 PVGSFVQPCL RPLMPAIAHA LFMDITHDNE CPIVHRSAYD ALPSSTIVSM 651 700 ENSTTRP00000004612/1-1533 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000294724/1-1532 ACCASGSTRG YDELVPHQIS VVSEERFYTK WNPEALPSNT GEVNFQSGII ENSBTAP00000008518/1-1532 ACCASGSTKG YDELVPHQIS VVSEERFYTK WNPAASPSSA GEVNSQSGII bmy_16157T0/1-967 ACCASGSTKG YDELVPH--- ---------- ---------- ---------- BACU002782/1-1532 ACCASGSTKG YDELVPHQIS VVSEERFYAK WNPEVSPSNI GEVNFQSGII 701 750 ENSTTRP00000004612/1-1533 XXXXXXXXXX XELGAKGFIQ VYVDQVDEDI VAVTRHSPSI HQSVVSVSRT ENSP00000294724/1-1532 AARCAISKLH QELGAKGFIQ VYVDQVDEDI VAVTRHSPSI HQSVVAVSRT ENSBTAP00000008518/1-1532 AARCAINKLH QELGAKGFIQ VYVDQVDADI VAVTRHSPSI HQSVVSVSRT bmy_16157T0/1-967 ---------- ---------Q VYVDQVDEDI VAVTRHSPSI HQSVVSVSRT BACU002782/1-1532 AARCAINKLH QELGAKGFIQ VYVDQVDEDI VAVTRHSPSI HQSVVSVSRT 751 800 ENSTTRP00000004612/1-1533 AFRNPKTSFY RKEVPQMCIP GKIEEVVLEA RTVERNTEPY RKDANSINGM ENSP00000294724/1-1532 AFRNPKTSFY SKEVPQMCIP GKIEEVVLEA RTIERNTKPY RKDENSINGT ENSBTAP00000008518/1-1532 AFRNPKTSFY SKEVPQMCIP GKIEEVVLEA RTVERNTAPY RKDANSINGI bmy_16157T0/1-967 AFRNPKTSFY SKEVPQMCIP GKIEEVVLEA RTVERNTEPY RKDANSINGL BACU002782/1-1532 AFRNPKTSFY SKEVPQMCIP GKIEEVVLEA RTVERNTEPY RKDANSINGL 801 850 ENSTTRP00000004612/1-1533 PNITVEIREH IQLNESKIVK QAGITTKGPN EYIQEIEFEN LSPGSVIIFR ENSP00000294724/1-1532 PDITVEIREH IQLNESKIVK QAGVATKGPN EYIQEIEFEN LSPGSVIIFR ENSBTAP00000008518/1-1532 PNITVEIREH IQLNESKIVK QAGVTTKGPN EYIQEIEFEN LSPGSVIIFR bmy_16157T0/1-967 PNITVEIREH IQLNESKIVK QAGITTKGPN ECIQEIEFEN LSPGSVIIFR BACU002782/1-1532 PNVTVEIREH IQLNESKIVK QAGITTKGPN EFIQEIEFEN LSPGSVIIFR 851 900 ENSTTRP00000004612/1-1533 VSLDPHAQAA VGILRNHLTQ FSPHFKSGSL AVDNTDPILK IPFASIASKL ENSP00000294724/1-1532 VSLDPHAQVA VGILRNHLTQ FSPHFKSGSL AVDNADPILK IPFASLASRL ENSBTAP00000008518/1-1532 VSLDPHAQVA VGILRNHLTQ FSPHFKSGSL AVDNADPILK IPFASIASRL bmy_16157T0/1-967 VSLDPHAQAA VGILRNHLTQ FSPHFKSGSL AVDNTDPILK IPFASIASKL BACU002782/1-1532 VSLDPHAQAA VGILRNHLTQ FSPHFKSGSL AVDNTDPILK IPFASIASKL 901 950 ENSTTRP00000004612/1-1533 TLAELNQVLY RCESEEQEDG GGCYNIPNWS SLKYAGLQGL MSILAEIRPK ENSP00000294724/1-1532 TLAELNQILY RCESEEKEDG GGCYDIPNWS ALKYAGLQGL MSVLAEIRPK ENSBTAP00000008518/1-1532 TLAELNQVLY RCESEEKEDG GGCYNIPNWL PLKYAGLQGL MSVLAEIRPK bmy_16157T0/1-967 TLAELNQVLY RCESEEQEDG GGCYNIPNWS SLKYAGLQGL MSILAEIRPK BACU002782/1-1532 TLAELNQVLY RCESEEQEDG GGCYNIPNWS SLKYAGLQGL MSILAEIRPK 951 1000 ENSTTRP00000004612/1-1533 NDLGHPFCDN LRSGDWMIDY VSNRLISRSG TIAEVGKWLQ AMFFYLKQIP ENSP00000294724/1-1532 NDLGHPFCNN LRSGDWMIDY VSNRLISRSG TIAEVGKWLQ AMFFYLKQIP ENSBTAP00000008518/1-1532 NDLGHPFCDN LRSGDWMIDY VSNRLISRSG TIAEVGKWLQ AMFFYLKQIP bmy_16157T0/1-967 NDLGHPFCDN LRSGDWMIDY VSNRLISRSG TVAEVGKWLQ AMFFYLKQIP BACU002782/1-1532 NDLGHPFCDN LRSGDWMIDY VSNRLISRSG TIAEVGKWLQ AMFFYLKQIP 1001 1050 ENSTTRP00000004612/1-1533 RYLIPCYFDA ILIGAYTTLL DIAWKQMSSF VQNGSTFVKH LSLGSVQMCG ENSP00000294724/1-1532 RYLIPCYFDA ILIGAYTTLL DTAWKQMSSF VQNGSTFVKH LSLGSVQLCG ENSBTAP00000008518/1-1532 RYLIPCYFDA ILIGAYTTLL DVAWKQMSSF VQNGSTFVKH LSLGSVQMCG bmy_16157T0/1-967 RYLIPCYFDA ILIGAYTTLL DIAWKQMSRY IQQS------ ---------- BACU002782/1-1532 RYLIPCYFDA ILIGAYTTLL DIAWKQMSSF VQNGSTLVKH LSLGSVQMCG 1051 1100 ENSTTRP00000004612/1-1533 VGKSPSLPLL SPSLMDVPCR LNEITREKEQ CCVSLAAGLP HFSSGIFRCW ENSP00000294724/1-1532 VGKFPSLPIL SPALMDVPYR LNEITKEKEQ CCVSLAAGLP HFSSGIFRCW ENSBTAP00000008518/1-1532 VGRFSSLPLL SPSLTDVPCR LNEITREKEQ CCVSLAAGLP HFSAGIFRCW bmy_16157T0/1-967 ---------- ---------- LNK------- ---------- ---------- BACU002782/1-1532 VGQFPSLPLL SPSLMDVPCR LNEITREKEQ CCVSLAAGLP HFSSGIFRCW 1101 1150 ENSTTRP00000004612/1-1533 GRDTFIALRG LLLITGRYLE ARNIILAFAG TLRHGLIPNL LGEGTYARYN ENSP00000294724/1-1532 GRDTFIALRG ILLITGRYVE ARNIILAFAG TLRHGLIPNL LGEGIYARYN ENSBTAP00000008518/1-1532 GRDTFIALRG LLLITGRYLE ARNIILAFAS TLRHGLIPNL LGEGTHARYN bmy_16157T0/1-967 ---------- ---------- ---------- ---------- ---------- BACU002782/1-1532 GRDTFIALKG LLLITGRYLE ARNIILAFAG TLRHGLIPNL LGEGTYARYN 1151 1200 ENSTTRP00000004612/1-1533 CRDAVWWWLQ CIQDYCKMVP NGLDILRCPV SRMYPTDDSA PLSAGTLDQP ENSP00000294724/1-1532 CRDAVWWWLQ CIQDYCKMVP NGLDILKCPV SRMYPTDDSA PLPAGTLDQP ENSBTAP00000008518/1-1532 CRDAVWWWLQ CIQDYCKMVP NGLDILNCPV SRMYPADDSV PLSAGTVDQP bmy_16157T0/1-967 ---------- ---------- ---------- ---------- ---------- BACU002782/1-1532 CRDAVWWWLQ CIQDYCKMVP NGLDILRCPV SRMYPTDDSA PLSAGTLDQP 1201 1250 ENSTTRP00000004612/1-1533 LFEVIQETMQ RHMQGIQFRE RNAGPQIDRN MKDEGFNITA GVDEETGFVY ENSP00000294724/1-1532 LFEVIQEAMQ KHMQGIQFRE RNAGPQIDRN MKDEGFNITA GVDEETGFVY ENSBTAP00000008518/1-1532 LFEVIQEAMQ RHMQGIQFRE RNAGPQIDRN MKDEGFNITA GVDEETGFVY bmy_16157T0/1-967 ---------- ---------- ---------- ---------- ---------- BACU002782/1-1532 LFEVIQEAMQ RHMQGIQFRE RNAGPQIDRN MKDEGFNITA GVDEETGFVY 1251 1300 ENSTTRP00000004612/1-1533 GGNRLNCGTW MDKMGESDRA RNKGIPATPR DGSAVEIVGL SKSAVRWLLE ENSP00000294724/1-1532 GGNRFNCGTW MDKMGESDRA RNRGIPATPR DGSAVEIVGL SKSAVRWLLE ENSBTAP00000008518/1-1532 GGNRFNCGTW MDKMGESDRA RNKGIPATPR DGSAVEIVGL SKSAVRWLLE bmy_16157T0/1-967 ---------- ---------- ---------- ---------- ---------- BACU002782/1-1532 GGNRLNCGTW MDKMGESDRA RNKGIPATPR DGSAVEIVGL SKSAVRWLLE 1301 1350 ENSTTRP00000004612/1-1533 LSQKNIFPYH EVTVKRHGKV VRVSYDEWNR KIQDNFEKLF YVSEDPSDVN ENSP00000294724/1-1532 LSKKNIFPYH EVTVKRHGKA IKVSYDEWNR KIQDNFEKLF HVSEDPSDLN ENSBTAP00000008518/1-1532 LSQKNIFPYH YVTVKRHGKL VRVSYDEWNR KIQENFEKLF YVSEDPSDVS bmy_16157T0/1-967 ---------- ---------- ---------- ---------- ---------- BACU002782/1-1532 LSQKNIFPYH EVTVKRHGKV VKVSYDEWNR KIQDNFEKLF YVSEDPSDVN 1351 1400 ENSTTRP00000004612/1-1533 EKHSNLVHKR GIYKDSYGAS SPWCDYQLRP NFTIAMVVAP ELFTTEKAWK ENSP00000294724/1-1532 EKHPNLVHKR GIYKDSYGAS SPWCDYQLRP NFTIAMVVAP ELFTTEKAWK ENSBTAP00000008518/1-1532 EKHPNLVHKR GIYKDSYGAS SPWCDYQLRP NFTIAMVVAP ELFTTQKAWK bmy_16157T0/1-967 ---------- ---------- ---------- ---------- ---------- BACU002782/1-1532 EKHSNLVHKR GIYKDSYGAS SPWCDYQLRP NFTIAMVVAP ELFTTEKAWK 1401 1450 ENSTTRP00000004612/1-1533 ALEIAGEKLL GPLGMKTLDP DDMVYCGTYD NALDNDNYSL AKGFNYHQGP ENSP00000294724/1-1532 ALEIAEKKLL GPLGMKTLDP DDMVYCGIYD NALDNDNYNL AKGFNYHQGP ENSBTAP00000008518/1-1532 ALEIAEKKLL GPLGMKTLDP DDMVYCGTYD NALDNDNYNL AKGFNYHQGP bmy_16157T0/1-967 ---------- ---------- ---------- ---------- ---------- BACU002782/1-1532 ALEIAEKKLL GPLGMKTLDP DDMVYCGTYD NALDNDNYNL AKGFNYHQGP 1451 1500 ENSTTRP00000004612/1-1533 EWLWPVGYFL RAKLYFSKLM GPEITSKTIF LVKNVLSRHY VHLERSPWKG ENSP00000294724/1-1532 EWLWPIGYFL RAKLYFSRLM GPETTAKTIV LVKNVLSRHY VHLERSPWKG ENSBTAP00000008518/1-1532 EWLWPVGYFL RAKLYFSRLM GPETTAKTIF LVKNVLSRHY VHLERSPWKG bmy_16157T0/1-967 ---------- ---------- ---------- ---------- ---------- BACU002782/1-1532 EWLWPVGYFL RAKLYFSKLM GPEITSKTIF LVKNVLSRHY VHLERSPWKG 1501 1550 ENSTTRP00000004612/1-1533 LPELTNENGQ YCPFSCETQA WSIATILETL YDL ENSP00000294724/1-1532 LPELTNENAQ YCPFSCETQA WSIATILETL YDL ENSBTAP00000008518/1-1532 LPELTNENGQ YCPFSCETQA WSIAAVLETL YDL bmy_16157T0/1-967 ---------- ---------- ---------- --- BACU002782/1-1532 LPELTNENGQ YCPFSCETQA WSIAAILETL YDL