KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:35:01 2014 Check: 00 .. Name: ENSP00000275815/1-976 Len: 1035 Check: 5342 Weight: 1.00 Name: ENSBTAP00000008354/1-982 Len: 1035 Check: 4358 Weight: 1.00 Name: ENSTTRP00000010250/1-979 Len: 1035 Check: 8233 Weight: 1.00 Name: bmy_15497T0/1-951 Len: 1035 Check: 9382 Weight: 1.00 Name: BACU010939/1-1034 Len: 1035 Check: 7458 Weight: 1.00 // 1 50 ENSP00000275815/1-976 MERRWPLGLG --LVLLLCAP LPPGARAKEV TLMDTSKAQG ELGWLLDPPK ENSBTAP00000008354/1-982 MERRWPLGLG LLLLLLLCAP LPPGARAEEV TLMDTSMAQE ELGWLLDPPE ENSTTRP00000010250/1-979 MERRWPLGLG --LLLLLCAP PPPGARAMEV TLMDTSKAQG ELGWLLDPPE bmy_15497T0/1-951 ---------- ---------- ---------- --MDTSKAQG ELGWLLDPPE BACU010939/1-1034 MERRWPLGLG -LLLLLLCAP LPPGARALEV TLMDTSKAQG ELGWLLDPPE 51 100 ENSP00000275815/1-976 DGWSEQQQIL NGTPLYMYQD CPMQGRRDTD HWLRSNWIYR GEEASRVHVE ENSBTAP00000008354/1-982 DGWSEVQQIL NGTPLYMYQD CPVQEGRDTD HWLRTNWIYR GEEASRVHLE ENSTTRP00000010250/1-979 DGWSEVQQIL NGTPLYMYQD CPVQESRDTD HWLRSNWIYR GEEASRVHVE bmy_15497T0/1-951 DGWSEVQQIL NGTPLYMYQD CPVQESRDTD HWLRSNWIYR GEEASRVHVE BACU010939/1-1034 DGWSEVQQIL NGTPLYMYQD CPVQESRDTD HWLRSNWIYR GEEASRVHVE 101 150 ENSP00000275815/1-976 LQFTVRDCKS FPGGAGPLGC KETFNLLYME SDQDVGIQLR RPLFQ----- ENSBTAP00000008354/1-982 LQFTVRDCKS FPGEGGPLGC KETFNLLYME SDQDVGIQLR RPLFQ----- ENSTTRP00000010250/1-979 LQFTVRDCKS FPGEAEPLGC KETFNLLYME SDQDVGIQLR RPLFQ----- bmy_15497T0/1-951 LQFTVRDCKS FPGEAGPLGC KETFNLLYME SDQDVGVQLR RPLFQ----- BACU010939/1-1034 LQFTVRDCKS FPGEAGPLGC KETFNLLYME SDQDVGIQLR RPLFQKVLLP 151 200 ENSP00000275815/1-976 ---------- ---------- -----KVTTV AADQSFTIRD LVSGSVKLNV ENSBTAP00000008354/1-982 ---------- ---------- -----KVTTV AADQSFTIRD LASRAVKMNV ENSTTRP00000010250/1-979 ---------- ---------- -----KVTTV AADQSFTIRD LASGAAKLNV bmy_15497T0/1-951 ---------- ---------- -----KVTTV AADQSFTIRD LASGAVKLNV BACU010939/1-1034 LGAISALTLI LAPLPSMTPF RSEKEKVTTV AADQSFTIRD LASGAVKLNV 201 250 ENSP00000275815/1-976 ERCSLGRLTR RGLYLAFHNP GACVALVSVR VFYQRCPETL NGLAQFPDTL ENSBTAP00000008354/1-982 ERCSLGRLTR RGLYLAFHNP GACVALVSVR VFYQRCPETV HGLARFPNTL ENSTTRP00000010250/1-979 ERCSLGHLTR RGLYLAFHNP GACVALVSVR VFYQRCPETV HGLAQFPDTL bmy_15497T0/1-951 ERCSLGHLTR RGLYLAFHNP GACVALVSVR VFYQRCPETV HGLAQFPDTL BACU010939/1-1034 ERCSLGHLTR RGLYLAFHNP GACVALVSVR VFYQLCPETV HGLAQFPDTL 251 300 ENSP00000275815/1-976 PGPAGLVEVA GTCLPHARAS PRPSGAPRMH CSPDGEWLVP VGRCHCEPGY ENSBTAP00000008354/1-982 PGPGGLAEVA GTCLPHAHIS PGPSGAPRMH CSPDGEWLVP VGRCHCEPGY ENSTTRP00000010250/1-979 PGPGGLAEVA GTCLPHAHVT PGPSGVPRMH CSPDGQWLVP VGRCHCEPGY bmy_15497T0/1-951 PGPGGLAEVA GTCLPHAHVT PGPSGAPRMH CSPDGQWLVP VGRCHCEPGY BACU010939/1-1034 PGPGGLAEVA GTCLPHAHVT PGPSGAPRMH CSPDGQWLVP VGRCRCEPGY 301 350 ENSP00000275815/1-976 EEGGSG--EA CVACPSGSYR MDMDTPHCLT CPQQSTAESE GATICTCESG ENSBTAP00000008354/1-982 EEGSSD-VEE CLACPSGSYR SDVDAPQCLR CPQHSTAEAE GATECACESE ENSTTRP00000010250/1-979 EEGGSGGVEG CLACPKGSYR ADVDTPSCLK CPQHSTSESE GATVCTCESG bmy_15497T0/1-951 EEGGGGGVEG CLACPKGFYR ADVNTPSCLK CPQHSTAESE GATMCTCESG BACU010939/1-1034 EEGGGGGVEG CLACPKGSYR ADVNTPSCLK CPQHSTAESE GATMCTCESG 351 400 ENSP00000275815/1-976 HYRAPGEGPQ VACTGPPSAP RNLSFSASGT QLSLRWEPPA DTGGRQDVRY ENSBTAP00000008354/1-982 HYRAPGEGPH AACTRPPSIP RNLSFSVSGT QLSLRWEPPA DLGEREDVTY ENSTTRP00000010250/1-979 HYRVPGEGPA KACTRPPSVP RNLSFSISGT QLSLRWEPPV DLGGREDVRY bmy_15497T0/1-951 HYRVPGEGPA AACTRPPSVP RNLSFSVSGT QLSLRWEPPV DLGGREDVRY BACU010939/1-1034 HYRVPGEGPA AACTRPPSVP RNLSFSVSGT QLSLRWEPPV DLGGREDVRY 401 450 ENSP00000275815/1-976 SVRCSQCQGT AQDGGPCQPC GVGVHFSPGA RGLTTPAVHV NGLEPYANYT ENSBTAP00000008354/1-982 NVECSQCQGA ALDGGPCQPC GAGVRFSAGP SGLTACSVRV DGLDPHANYT ENSTTRP00000010250/1-979 DVGCSQCREA APDGEPCQPC GESVRFSPGP SGLTTAAVCV DGLEPDANYT bmy_15497T0/1-951 DVGCSQCRGA ALDGEPCQPC GGSVRFSPGP SGLTSAAVCV DGLDPDANYT BACU010939/1-1034 DVGCSQCRGA ALDGEPCQPC GGSVRFSPGP SGLTSPTVCV DGLEPDANYT 451 500 ENSP00000275815/1-976 FNVEAQNGVS GLGSSGHAST SVSISMGHAE SLSGLSLRLV KKEPRQLELT ENSBTAP00000008354/1-982 FNVEAQNGVS GLGASRPASA SLSINMGSAE SLSGLSLRLV KKAPRQLELT ENSTTRP00000010250/1-979 FNVEAQNGVS ELGTSKPASA SLSISMGRAV TLSGLSLRLV KKAPRQLELT bmy_15497T0/1-951 FNVEAQNGVS ELGASKPASA SLSISMGRAE TPSGLSLRLV KKAPRQLELT BACU010939/1-1034 FNVEAQNGVS ELGASKPASA LLSVSMGRAE TPSGLSLRLV KKAPRQLELT 501 550 ENSP00000275815/1-976 WAGSRPRSPG ANLTYELHVL N--------- ---------- ---QDEERYQ ENSBTAP00000008354/1-982 WAGSRPRSPG GNLSYELHVL N--------- ---------- ---QDEERYQ ENSTTRP00000010250/1-979 WAASRPRSPG GNLSYELHVL N--------- ---------- ---QDEERYQ bmy_15497T0/1-951 WAGSRPRSPG GNLSYELHVL N--------- ---------- ---QDEERYQ BACU010939/1-1034 WAGSRPRSPG GNLSYELHVL NQDCPSPPPG LVWHGPGNTS PHPQDEERYQ 551 600 ENSP00000275815/1-976 MVLEPRVLLT ELQPDTTYIV RVRMLTPLGP GPFSPDHEFR TSPPVSRGLT ENSBTAP00000008354/1-982 MVLEPRVLLT ELQPDTTYIV RVRMVTPLGP GPFSADHEFR TSPPVSRVLT ENSTTRP00000010250/1-979 MVLEPRVLLT ELQPDTTYTV RVRMMTPLGP GPFSPDHEFR TSPPVSRVVT bmy_15497T0/1-951 LVLEPRVLLT ELQPDTTYTV RVRMVTPLGP GPFSPDHEFR TSPPVSRVVT BACU010939/1-1034 LVLEPRVLLT ELQPDTTYTV RVRMVTPLGP GPFSPDHEFR TSPPVSRVVT 601 650 ENSP00000275815/1-976 GGEIVAVIFG LLLGAALLLG ILVFRSRRAQ R---QRQQRQ RDRATDVDRE ENSBTAP00000008354/1-982 GGEIVAIIFG LLLGVALLLG MLLFRSRRAQ RRRHQRQQRQ RDRVADGDRE ENSTTRP00000010250/1-979 GGEIVAIIFG LLLGVALLLG MLVFRSRKAQ RRRHQRRQRQ RDCVADGDRE bmy_15497T0/1-951 GGEIVAIICG LLLGVALLLG MLVFRSRKAQ RRRHQRRQRQ RDRVADGDRE BACU010939/1-1034 GGEIVAIICG LLLGVALLLG MLVFRSRKAQ RRRHQRRQRQ HDRVADGDRE 651 700 ENSP00000275815/1-976 DKLWLKPYVD LQAYEDPAQG ALDFTRELDP AWLMVDTVIG EGEFGEVYRG ENSBTAP00000008354/1-982 DKLWLKPYVD LQAYEDPAQG ALDFTQELDP AWLVVDTVIG EGEFGEVYRG ENSTTRP00000010250/1-979 DKLWLKPYVD LQAYEDPAQG ALDFTQELNP AWLVVDTVIG EGEFGEVYRG bmy_15497T0/1-951 DKLWLKPYVD LQAYEDPAQG ALDFTQELDP AWLVVDTVIG EGEFGEVYRG BACU010939/1-1034 DKLWLKPYVD LQAYEDPAQG ALDFTQELDP AWLVVDTVIG EGEFGEVYRG 701 750 ENSP00000275815/1-976 TLRLPSQDCK TVAIKTLKDT SPGGQWWNFL REATIMGQFS HPHILHLEGV ENSBTAP00000008354/1-982 SLRLPSQDGK IVAIKTLKDT SPEGQWWNFL REATIMGQFN HPHILHLEGV ENSTTRP00000010250/1-979 SLRTPSQGSK TVAIKTLKDT SPDGQWWNFL REATIMGQFN HPHILHLEGV bmy_15497T0/1-951 SLRITGQDAK TVAIKTLKDT SPDGQWWNFL REATIMGQFS HPHVLHLEGV BACU010939/1-1034 SLRIPGQDAK TVAIKTLKDT SPDGQWWNFL REATIMGQFN HPHILHLEGV 751 800 ENSP00000275815/1-976 VTKRKPIMII TEFMENGALD AFLREREDQL VPGQLVAMLQ GIASGMNYLS ENSBTAP00000008354/1-982 VTKRKPIMII TEFMENGALD AFLREREDQL VPGQLVAMLQ GIASGMNYLS ENSTTRP00000010250/1-979 VTKRKPIMII TEFMQNGALD AFLREREDQL VPGQLVAMLQ GIASGMNYLS bmy_15497T0/1-951 VTKRKPIMII TEFMENGALD AFLREREDQL VPGQLVAMLQ GIASGMNYLS BACU010939/1-1034 VTKRKPIMII TEFMENGALD AFLREREDQL VPGQLVAMLQ GIASGMNYLS 801 850 ENSP00000275815/1-976 NHNYVHRDLA ARNILVNQNL CCKVSDFGLT RLLDDFDGTY ETQGGKIPIR ENSBTAP00000008354/1-982 DHNYVHRDLA ARNILVSQNL CCKVSDFGLT RLLDNFDGTY ETQGGKIPIR ENSTTRP00000010250/1-979 DHSYVHRDLA ARNILVSQNL CCKVSDFGLT RLLDNFDGTY ETQGGKIPIR bmy_15497T0/1-951 DHSYVHRDLA ARNILVSQNL CCKVSDFGLT RLLDNFDGTY ETQGGKIPIR BACU010939/1-1034 DHSYVHRDLA ARNILVSQNL CCKVSDFGLT RLLDNFDGTY ETQGGKIPIR 851 900 ENSP00000275815/1-976 WTAPEAIAHR IFTTASDVWS FGIVMWEVLS FGDKPYGEMS NQEVMKSIED ENSBTAP00000008354/1-982 WTAPEAIAHR IFTTASDVWS FGIVMWEVLS FGDKPYGDMS NQEVMKSIED ENSTTRP00000010250/1-979 WTAPEAXXXX XXXXXXXXXX FGIVMW-VLS FGDKPYG-MS NQEVMKSIED bmy_15497T0/1-951 WTAPEAIAHR IFTTASDVWS FGIVMWEVLS FGDKPYGEMS NQEVMKSIED BACU010939/1-1034 WTAPEAIAHR IFTTASDVWS FGIVMWEVLS FGDKPYGEMS NQEVMKSIED 901 950 ENSP00000275815/1-976 GYRLPPPVDC PAPLYELMKN CWAYDRARRP HFQKLQAHLE QLLANPHSLR ENSBTAP00000008354/1-982 GYRLPPPVDC PAPLYELMKN CWAYDRVRRP TFHRLKAQLE HLHANPHSLR ENSTTRP00000010250/1-979 GYRLPPPVDC PARLYELMKD CWAYDCAHRP PFHQLKAQLE HLHANPHSLR bmy_15497T0/1-951 GYQLPPPVDC PAPLYELMKN CWAYDCARRP PFHRLKAQLE HLHANPHSLR BACU010939/1-1034 GYQLPPPVDC PAPLYELMKN CWAYDCARRP PFHRLKAQLE HLHANPHSLR 951 1000 ENSP00000275815/1-976 TIANFDPRMT LRLPSLSGSD GIPYRTVSEW LESIRMKRYI LHFHSAGLDT ENSBTAP00000008354/1-982 TIANFDPRVT LRLPSLSGSD GIPYRSVAEW LESIRMKRYI LHFRSAGLDT ENSTTRP00000010250/1-979 TIANFDPRVT LRLPSLSGSD GIPYRSVAEW LESIRMKRYI LHFHSAGLDT bmy_15497T0/1-951 TIANFDPRVT LRLPSLSGSD GIPYRSVAEW LESIRMKRYI LHFHSAGLDT BACU010939/1-1034 TIANFDPRVT LRLPSLSGSD GIPYRSVAEW LESIRMKRYI LHFQSAGLDT 1001 1050 ENSP00000275815/1-976 MECVLELTAE DLTQMGITLP GHQKRILCSI QGFKD ENSBTAP00000008354/1-982 MECVLDLTAE DLVQMGITLP GHQKRILYSI QGFKD ENSTTRP00000010250/1-979 MQCVLDLTAE DLAQMGITQP AHQKRILCSI QGFKD bmy_15497T0/1-951 MECVLDLTAE DLAQMGITLP GHQKRILCSI QGFKD BACU010939/1-1034 MECVLDLTAE DLAQMGITLP GHQKRILCSI QGFKD