KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:34:59 2014 Check: 00 .. Name: ENSP00000361666/1-548 Len: 552 Check: 5873 Weight: 1.00 Name: ENSBTAP00000008336/1-547 Len: 552 Check: 4201 Weight: 1.00 Name: ENSTTRP00000005989/1-418 Len: 552 Check: 4811 Weight: 1.00 Name: bmy_00054T0/1-434 Len: 552 Check: 3034 Weight: 1.00 Name: BACU015801/1-547 Len: 552 Check: 2054 Weight: 1.00 // 1 50 ENSP00000361666/1-548 MGFEELLEQV GGFGPFQLRN VALLALPRVL LPLHFLLPIF LAAVPAHRCA ENSBTAP00000008336/1-547 MGFEELLDKV GGFGPFQLRN VALLALPRVL LPMHFLLPIF LAAVPAHRCA ENSTTRP00000005989/1-418 ---------- ---------- ---------- ---------- ---------- bmy_00054T0/1-434 MGFEELLHKV GGFGPFQLRN VALLALPRVL LPMHFLLPIF LAAVPAHRCA BACU015801/1-547 MGFEELLHKV GGFGPFQLRN VALLALPRVL LPMHFLLPIF LAAVPAHRCA 51 100 ENSP00000361666/1-548 LPGAPANFSH QDVWLEAHLP REPDGTLSSC LRFAYPQALP NTTLGEERQS ENSBTAP00000008336/1-547 LPGVPDNFSN EDAWLEAHLP REPDGRLSAC LRFTHPQALP NSTLWGEGQN ENSTTRP00000005989/1-418 ---------- ---------- ---------- ---------- ---------- bmy_00054T0/1-434 LPGVPANFSH QDEWVEAHLP REPDGRLSSC LLFTHLQALP NTTLWGGGQS BACU015801/1-547 LPGVPANFSH QDEWVEAHLP REPDGRLSSC LLFTHLQALP NTTLWGGGQS 101 150 ENSP00000361666/1-548 RGE-LEDEPA TVPCSQGWEY DHSEFSSTIA TESQWDLVCE QKGLNRAAST ENSBTAP00000008336/1-547 SGEQPEGEPS TVPCPQGWEY NHSEFSSTIA TE--WDLVCE QKGLNKAIST ENSTTRP00000005989/1-418 ---------- ---------- ---------- ----WDLVCE QKGLNRATST bmy_00054T0/1-434 PGEQLEGEPS TVPCPQGWEY DHSEFSSTIA TE--WDLVCE QKGLNRATST BACU015801/1-547 PGEQLEGEPS TVPCPQGWEY DHSEFSSTIA TE--WDLVCE QKGLNRATST 151 200 ENSP00000361666/1-548 FFFAGVLVGA VAFGYLSDRF GRRRLLLVAY VSTLVLGLAS AASVSYVMFA ENSBTAP00000008336/1-547 FFFAGVLVGA VVYGYLSDRF GRRRLLLVAY VSSLALGLAS AASVSYIMFA ENSTTRP00000005989/1-418 FFFAGVLVGA VAFGYLSDRF GRRRLLLVAY VSSLVLGLAS AASVSYTMFA bmy_00054T0/1-434 FFFAGVLVGA VAFGYLSDRF GRRRLLLVAY VSSLALGLAS AASVSYTMFA BACU015801/1-547 FFFAGVLVGA VAFGYLSDRF GRRRLLLVAY VSSLVLGLAS AASVSYTMFA 201 250 ENSP00000361666/1-548 ITRTLTGSAL AGFTIIVMPL ---ELEWLDV EHRTVAGVLS STFWTGGVML ENSBTAP00000008336/1-547 ITRTLTGMAL AGFTIIVMPL ---ELEWLDV RHRTVAGVLS STFWTGGVML ENSTTRP00000005989/1-418 ITRTLTGTAL AGFTIIVMPL GEAELEWLDV GHRTVAGVLS STFWTGGVML bmy_00054T0/1-434 ITRTLTGTAL AGFTIIVMPL ---ELEWLDV GHRTVAGVLS STFWTGGVML BACU015801/1-547 ITRTLTGTAL AGFTIIVMPL ---ELEWLDV GHRTVAGVLS STFWTGGVML 251 300 ENSP00000361666/1-548 LALVGYLIRD WRWLLLAVTL PCAPGILSLW WVPESARWLL TQGHVKEAHR ENSBTAP00000008336/1-547 LALIGYLIRD WRWLLLTVTL PCVPGILTLW WVPESARWLL TQGRVEEAHR ENSTTRP00000005989/1-418 LALVGYLIRD WRWLLLAVTL PCAPGILSIW WVPESARWLL TQGRVEEAHR bmy_00054T0/1-434 LALVGYLIRD WRWLLLAVTL PCAPGILSIW ---------- ---------- BACU015801/1-547 LALVGYLIRD WRWLLLAVTL PCAPGILSIW WVPESARWLL TQGRVEEAHR 301 350 ENSP00000361666/1-548 YLLHCARLNG RPVCEDSFSQ EAVSKVAAGE RVVRRPSYLD LFRTPRLRHI ENSBTAP00000008336/1-547 YLLRCARLNG PPVGEDSLSR EALNKVAAAE RMVRRPSYLD LFRTPRLRYI ENSTTRP00000005989/1-418 YLLRCARLNG RPLGEDGLSQ EALSKVAAAE RVVRTPSYLD LFRTPRLRHI bmy_00054T0/1-434 -------LNG RPLGEDGLSQ EALSKVAAAE RVVRRPSYLD LFRTPRLRHI BACU015801/1-547 YLLRCARLNG RPLGEDGLSQ EALSKVAAAE RVVRRPSYLD LFRTPRLRHI 351 400 ENSP00000361666/1-548 SLCCVVVWFG VNFSYYGLSL DVSGLGLNVY QTQLLFGAVE LPSKLLVYLS ENSBTAP00000008336/1-547 SLCCMVVWFG VNFSYYGVSL DLSGLGLNVY LTQLVFGAVE LPSKLLVYLS ENSTTRP00000005989/1-418 SLCCMVVWFG VNFSYYGVSL DVSGLGLNVY QTQLLFGAVE LPSKLLVYLS bmy_00054T0/1-434 SLCCMVVWFG VNFSYYGVSL DVSGLGLNVY QTQLLFGAVE LPSKLLVYLS BACU015801/1-547 SLCCMVVWFG VNFSYYGVSL DVSGLGLNVY QTQLLFGAVE LPSKLLVYLS 401 450 ENSP00000361666/1-548 VRYAGRRLTQ AGTLLGTALA FGTRLLVSSD MKSWSTVLAV MGKAFSEAAF ENSBTAP00000008336/1-547 VRHAGRRLTM AGTLLGAALA VGLRILVSPE MKSWSTALAV MGKAFSEAAF ENSTTRP00000005989/1-418 VRHAGRRLTL AGTLLGAALA LGFRLLVSSE VKSWSTALAV MGKGFSEAAF bmy_00054T0/1-434 VRHAGRRLTL AGTLLGAALA LGFRLLVSSE VKSWSTALAV MGKGFSEAAF BACU015801/1-547 VRHAGRRLTL AGTLLGAALA LGFRLLVSSE VKSWSTALAV MGKGFSEAAF 451 500 ENSP00000361666/1-548 TTAYLFTSEL YPTVLRQTGM GLTALVGRLG GSLAPLAALL DGVWLSLPKL ENSBTAP00000008336/1-547 TTAYLFTSEL YPTVLRQTGM GLTALVGRLG GSLAPLAALL DGVWLSLPKL ENSTTRP00000005989/1-418 TTAYLFTSEL YPTVLRQTGM GLTALVGRLG GSLAPLAALL DGVWLSLPKL bmy_00054T0/1-434 TTAYLFTSEL YPTVLR---- ---------- ---------- ---------- BACU015801/1-547 TTAYLFTSEL YPTVLRQTGM GLTALVGRLG GSLAPLAALL DGVWLSLPKL 501 550 ENSP00000361666/1-548 TYGGIALLAA GTALLLPETR QAQLPETIQD VERKSAPTSL QEEEMPMKQV ENSBTAP00000008336/1-547 AYGGIALLAA CTALLLPETK QAQLPETIQD VERKSAPSSL QEEEMPMKQV ENSTTRP00000005989/1-418 AYGGIALLAA CTALLLPETK QAQLPETIQD VERKSAPSNP QEEEMPRKQV bmy_00054T0/1-434 ---------- ---------- ---------- ---------- ---------- BACU015801/1-547 AYGGIALLAA CTALLLPETK QAQLPETIQD VERKSAPSNP QEEEMPMKQV 551 600 ENSP00000361666/1-548 QN ENSBTAP00000008336/1-547 QD ENSTTRP00000005989/1-418 QD bmy_00054T0/1-434 -- BACU015801/1-547 QD